Yana Safonova

Title(s)Postdoctoral Scholar, Qualcomm Institute
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    2019AAI Intersect Fellowship for Computational Scientists and Immunologists

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Bhardwaj V, Franceschetti M, Rao R, Pevzner PA, Safonova Y. Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species. PLoS Comput Biol. 2020 Apr 27; 16(4):e1007837. PMID: 32339161.
      View in: PubMed
    2. Safonova Y, Pevzner PA. De novo Inference of Diversity Genes and Analysis of Non-canonical V(DD)J Recombination in Immunoglobulins. Front Immunol. 2019; 10:987. PMID: 31134072.
      View in: PubMed
    3. Shlemov A, Bankevich S, Bzikadze A, Turchaninova MA, Safonova Y, Pevzner PA. Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Reads. J Immunol. 2017 11 01; 199(9):3369-3380. PMID: 28978691.
      View in: PubMed
    4. Baranova MA, Logacheva MD, Penin AA, Seplyarskiy VB, Safonova YY, Naumenko SA, Klepikova AV, Gerasimov ES, Bazykin GA, James TY, Kondrashov AS. Extraordinary Genetic Diversity in a Wood Decay Mushroom. Mol Biol Evol. 2015 Oct; 32(10):2775-83. PMID: 26163667.
      View in: PubMed
    5. Safonova Y, Bonissone S, Kurpilyansky E, Starostina E, Lapidus A, Stinson J, DePalatis L, Sandoval W, Lill J, Pevzner PA. IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Bioinformatics. 2015 Jun 15; 31(12):i53-61. PMID: 26072509.
      View in: PubMed
    6. Safonova Y, Lapidus A, Lill J. IgSimulator: a versatile immunosequencing simulator. Bioinformatics. 2015 Oct 01; 31(19):3213-5. PMID: 26007226.
      View in: PubMed
    7. Safonova Y, Bankevich A, Pevzner PA. dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. J Comput Biol. 2015 Jun; 22(6):528-45. PMID: 25734602.
      View in: PubMed