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Author Correction: From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions. Mol Syst Biol. 2024 Nov; 20(11):1257-1259.
Mori M, Zhang Z, Banaei-Esfahani A, Lalanne JB, Okano H, Collins BC, Schmidt A, Schubert OT, Lee DS, Li GW, Aebersold R, Hwa T, Ludwig C. PMID: 39354190; PMCID: PMC11535196.
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PubMed Mentions: Fields:
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Functional decomposition of metabolism allows a system-level quantification of fluxes and protein allocation towards specific metabolic functions. Nat Commun. 2023 07 13; 14(1):4161.
Mori M, Cheng C, Taylor BR, Okano H, Hwa T. PMID: 37443156; PMCID: PMC10345195.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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Efficient integrated production of bioethanol and antiviral glycerolysis lignin from sugarcane trash. Biotechnol Biofuels Bioprod. 2023 May 15; 16(1):82.
Khattab SMR, Okano H, Kimura C, Fujita T, Watanabe T. PMID: 37189175; PMCID: PMC10186800.
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PubMed Mentions:
2
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A Genome-Scale Metabolic Model of Marine Heterotroph Vibrio splendidus Strain 1A01. mSystems. 2023 04 27; 8(2):e0037722.
Iffland-Stettner A, Okano H, Gralka M, Guessous G, Amarnath K, Cordero OX, Hwa T, Bonhoeffer S. PMID: 36853050; PMCID: PMC10134806.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves. Nat Microbiol. 2023 02; 8(2):347-359.
Wu C, Mori M, Abele M, Banaei-Esfahani A, Zhang Z, Okano H, Aebersold R, Ludwig C, Hwa T. PMID: 36737588; PMCID: PMC9994330.
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PubMed Mentions:
15 Fields:
Translation:
Cells
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Hierarchical and simultaneous utilization of carbon substrates: mechanistic insights, physiological roles, and ecological consequences. Curr Opin Microbiol. 2021 10; 63:172-178.
Okano H, Hermsen R, Hwa T. PMID: 34365153; PMCID: PMC9744632.
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PubMed Mentions:
11 Fields:
Translation:
Cells
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From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions. Mol Syst Biol. 2021 05; 17(5):e9536.
Mori M, Zhang Z, Banaei-Esfahani A, Lalanne JB, Okano H, Collins BC, Schmidt A, Schubert OT, Lee DS, Li GW, Aebersold R, Hwa T, Ludwig C. PMID: 34032011; PMCID: PMC8144880.
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PubMed Mentions:
67 Fields:
Translation:
Cells
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Global coordination of metabolic pathways in Escherichia coli by active and passive regulation. Mol Syst Biol. 2021 04; 17(4):e10064.
Kochanowski K, Okano H, Patsalo V, Williamson J, Sauer U, Hwa T. PMID: 33852189; PMCID: PMC8045939.
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PubMed Mentions:
24 Fields:
Translation:
Cells
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A universal trade-off between growth and lag in fluctuating environments. Nature. 2020 08; 584(7821):470-474.
Basan M, Honda T, Christodoulou D, Hörl M, Chang YF, Leoncini E, Mukherjee A, Okano H, Taylor BR, Silverman JM, Sanchez C, Williamson JR, Paulsson J, Hwa T, Sauer U. PMID: 32669712; PMCID: PMC7442741.
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PubMed Mentions:
109 Fields:
Translation:
AnimalsCells
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Regulation underlying hierarchical and simultaneous utilization of carbon substrates by flux sensors in Escherichia coli. Nat Microbiol. 2020 01; 5(1):206-215.
Okano H, Hermsen R, Kochanowski K, Hwa T. PMID: 31819215; PMCID: PMC6925339.
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PubMed Mentions:
36 Fields:
Translation:
Cells
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Accurate fidelity analysis of the reverse transcriptase by a modified next-generation sequencing. Enzyme Microb Technol. 2018 Aug; 115:81-85.
Okano H, Baba M, Hidese R, Iida K, Li T, Kojima K, Takita T, Yanagihara I, Fujiwara S, Yasukawa K. PMID: 29859606.
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PubMed Mentions:
10 Fields:
Translation:
HumansCells
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High sensitive RNA detection by one-step RT-PCR using the genetically engineered variant of DNA polymerase with reverse transcriptase activity from hyperthermophilies. J Biosci Bioeng. 2018 Mar; 125(3):275-281.
Okano H, Baba M, Kawato K, Hidese R, Yanagihara I, Kojima K, Takita T, Fujiwara S, Yasukawa K. PMID: 29100684.
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PubMed Mentions:
8 Fields:
Translation:
Cells
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Slowdown of Translational Elongation in Escherichia coli under Hyperosmotic Stress. mBio. 2018 02 13; 9(1).
Dai X, Zhu M, Warren M, Balakrishnan R, Okano H, Williamson JR, Fredrick K, Hwa T. PMID: 29440576; PMCID: PMC5821080.
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PubMed Mentions:
38 Fields:
Translation:
Cells
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Structural Basis for the Serratia marcescens Lipase Secretion System: Crystal Structures of the Membrane Fusion Protein and Nucleotide-Binding Domain. Biochemistry. 2017 11 28; 56(47):6281-6291.
Murata D, Okano H, Angkawidjaja C, Akutsu M, Tanaka SI, Kitahara K, Yoshizawa T, Matsumura H, Kado Y, Mizohata E, Inoue T, Sano S, Koga Y, Kanaya S, Takano K. PMID: 29094929.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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Next-generation sequencing-based analysis of reverse transcriptase fidelity. Biochem Biophys Res Commun. 2017 10 14; 492(2):147-153.
Yasukawa K, Iida K, Okano H, Hidese R, Baba M, Yanagihara I, Kojima K, Takita T, Fujiwara S. PMID: 28778390.
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PubMed Mentions:
12 Fields:
Translation:
Cells
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High sensitive one-step RT-PCR using MMLV reverse transcriptase, DNA polymerase with reverse transcriptase activity, and DNA/RNA helicase. Biochem Biophys Res Commun. 2017 05 20; 487(1):128-133.
Okano H, Baba M, Yamasaki T, Hidese R, Fujiwara S, Yanagihara I, Ujiiye T, Hayashi T, Kojima K, Takita T, Yasukawa K. PMID: 28400277.
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Translation:
Cells
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Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth. Nat Microbiol. 2016 Dec 12; 2:16231.
Dai X, Zhu M, Warren M, Balakrishnan R, Patsalo V, Okano H, Williamson JR, Fredrick K, Wang YP, Hwa T. PMID: 27941827; PMCID: PMC5346290.
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PubMed Mentions:
168 Fields:
Translation:
Cells
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Enhanced detection of RNA by MMLV reverse transcriptase coupled with thermostable DNA polymerase and DNA/RNA helicase. Enzyme Microb Technol. 2017 Jan; 96:111-120.
Okano H, Katano Y, Baba M, Fujiwara A, Hidese R, Fujiwara S, Yanagihara I, Hayashi T, Kojima K, Takita T, Yasukawa K. PMID: 27871370.
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PubMed Mentions:
4 Fields:
Translation:
Cells
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Expression of moloney murine leukemia virus reverse transcriptase in a cell-free protein expression system. Biotechnol Lett. 2016 Jul; 38(7):1203-11.
Katano Y, Hisayoshi T, Kuze I, Okano H, Ito M, Nishigaki K, Takita T, Yasukawa K. PMID: 27053084.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Overflow metabolism in Escherichia coli results from efficient proteome allocation. Nature. 2015 Dec 03; 528(7580):99-104.
Basan M, Hui S, Okano H, Zhang Z, Shen Y, Williamson JR, Hwa T. PMID: 26632588; PMCID: PMC4843128.
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PubMed Mentions:
331 Fields:
Translation:
Cells
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A growth-rate composition formula for the growth of E.coli on co-utilized carbon substrates. Mol Syst Biol. 2015 Apr 09; 11(4):801.
Hermsen R, Okano H, You C, Werner N, Hwa T. PMID: 25862745; PMCID: PMC4422558.
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PubMed Mentions:
47 Fields:
Translation:
Cells
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Structure, activity, and stability of metagenome-derived glycoside hydrolase family 9 endoglucanase with an N-terminal Ig-like domain. Protein Sci. 2015 Mar; 24(3):408-19.
Okano H, Kanaya E, Ozaki M, Angkawidjaja C, Kanaya S. PMID: 25545469; PMCID: PMC4353366.
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PubMed Mentions:
10 Fields:
Translation:
Cells
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Structural and biochemical characterization of a metagenome-derived esterase with a long N-terminal extension. Protein Sci. 2015 Jan; 24(1):93-104.
Okano H, Hong X, Kanaya E, Angkawidjaja C, Kanaya S. PMID: 25348365; PMCID: PMC4282415.
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PubMed Mentions:
5 Fields:
Translation:
CellsPHPublic Health
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Structure and stability of metagenome-derived glycoside hydrolase family 12 cellulase (LC-CelA) a homolog of Cel12A from Rhodothermus marinus. FEBS Open Bio. 2014; 4:936-46.
Okano H, Ozaki M, Kanaya E, Kim JJ, Angkawidjaja C, Koga Y, Kanaya S. PMID: 25426413; PMCID: PMC4239480.
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PubMed Mentions:
8 Fields:
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The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria. Science. 2013 Nov 29; 342(6162):1237435.
Deris JB, Kim M, Zhang Z, Okano H, Hermsen R, Groisman A, Hwa T. PMID: 24288338; PMCID: PMC4059556.
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PubMed Mentions:
101 Fields:
Translation:
Cells
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Coordination of bacterial proteome with metabolism by cyclic AMP signalling. Nature. 2013 Aug 15; 500(7462):301-6.
You C, Okano H, Hui S, Zhang Z, Kim M, Gunderson CW, Wang YP, Lenz P, Yan D, Hwa T. PMID: 23925119; PMCID: PMC4038431.
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PubMed Mentions:
210 Fields:
Translation:
Cells
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Need-based activation of ammonium uptake in Escherichia coli. Mol Syst Biol. 2012; 8:616.
Kim M, Zhang Z, Okano H, Yan D, Groisman A, Hwa T. PMID: 23010999; PMCID: PMC3472687.
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PubMed Mentions:
51 Fields:
Translation:
Cells
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Reversible adenylylation of glutamine synthetase is dynamically counterbalanced during steady-state growth of Escherichia coli. J Mol Biol. 2010 Dec 03; 404(3):522-36.
Okano H, Hwa T, Lenz P, Yan D. PMID: 20887734.
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PubMed Mentions:
9 Fields:
Translation:
Cells
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Predictors of gastric myoelectrical activity in type 2 diabetes mellitus. J Clin Gastroenterol. 2009 May-Jun; 43(5):429-36.
Hata N, Murata S, Maeda J, Yatani H, Kohno Y, Yokono K, Okano H. PMID: 19564814.
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PubMed Mentions:
5 Fields:
Translation:
Humans
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Axotomy alters alternative splicing of choline acetyltransferase in the rat dorsal motor nucleus of the vagus nerve. J Comp Neurol. 2009 Mar 10; 513(2):237-48.
Saito A, Sato T, Okano H, Toyoda K, Bamba H, Kimura S, Bellier JP, Matsuo A, Kimura H, Hisa Y, Tooyama I. PMID: 19137611.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase. J Biol Chem. 2009 Apr 03; 284(14):9566-77.
Inoue T, Okino N, Kakuta Y, Hijikata A, Okano H, Goda HM, Tani M, Sueyoshi N, Kambayashi K, Matsumura H, Kai Y, Ito M. PMID: 19088069; PMCID: PMC2666609.
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PubMed Mentions:
16 Fields:
Translation:
HumansAnimalsCells
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[A case of elderly onset loss of consciousness due to bacterial meningitis and subsequent vasculitis]. Nihon Ronen Igakkai Zasshi. 2008 Jul; 45(4):434-8.
Kameno M, Takata T, Yasuda H, Hara K, Okano H, Sakurai T, Nagata M, Yokono K. PMID: 18753720.
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PubMed Mentions: Fields:
Translation:
Humans
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Estimation of the source-by-source effect of autorepression on genetic noise. Biophys J. 2008 Aug; 95(3):1063-74.
Okano H, Kobayashi TJ, Tozaki H, Kimura H. PMID: 18390607; PMCID: PMC2479612.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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Reconstructing the single-cell-level behavior of a toggle switch from population-level measurements. FEBS Lett. 2008 Apr 02; 582(7):1067-72.
Tozaki H, Kobayashi TJ, Okano H, Yamamoto R, Aihara K, Kimura H. PMID: 18325334.
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PubMed Mentions:
3 Fields:
Translation:
Cells
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A case of severe dilatation of the parotid duct due to fibrinous sialodochitis. Acta Otolaryngol. 2006 Oct; 126(10):1112-4.
Shimada T, Okano H, Hisa Y. PMID: 16923720.
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PubMed Mentions:
4 Fields:
Translation:
Humans
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[Group B streptococcal vertebral osteomyelitis following superficial suppurative thrombophlebitis]. Nihon Ronen Igakkai Zasshi. 2006 Sep; 43(5):635-8.
Ohji G, Nagata M, Hara K, Matsuzawa T, Hata N, Yasuda H, Sakurai T, Okano H, Yokono K. PMID: 17073295.
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PubMed Mentions:
1 Fields:
Translation:
HumansCells
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Localization of fibroblast growth factor-1 in cholinergic neurons innervating the rat larynx. J Histochem Cytochem. 2006 Sep; 54(9):1061-71.
Okano H, Toyoda K, Bamba H, Hisa Y, Oomura Y, Imamura T, Furukawa S, Kimura H, Tooyama I. PMID: 16735594.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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Mathematical description of gene regulatory units. Biophys J. 2006 Aug 15; 91(4):1235-47.
Tanaka RJ, Okano H, Kimura H. PMID: 16714341; PMCID: PMC1518624.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimalsCells
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Age-related expression of alpha-gustducin in the rat larynx. Ann Otol Rhinol Laryngol. 2006 May; 115(5):387-93.
Nishio T, Koike S, Okano H, Bamba H, Hisa Y. PMID: 16739672.
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PubMed Mentions: Fields:
Translation:
Animals
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Participation of TRPV1 and TRPV2 in the rat laryngeal sensory innervation. Neurosci Lett. 2006 May 29; 400(1-2):35-8.
Okano H, Koike S, Bamba H, Toyoda K, Uno T, Hisa Y. PMID: 16517068.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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Comparison of FGF1 (aFGF) expression between the dorsal motor nucleus of vagus and the hypoglossal nucleus of rat. Acta Histochem Cytochem. 2006 Mar 02; 39(1):1-7.
Toyoda K, Okano H, Bamba H, Hisa Y, Oomura Y, Imamura T, Furukawa S, Tooyama I. PMID: 17460766; PMCID: PMC1831852.
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PubMed Mentions:
1
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A newborn case of congenital laryngeal cyst complicated with pneumothorax and pneumomediastinum. Auris Nasus Larynx. 2006 Jun; 33(2):207-10.
Bamba H, Hirasugi K, Okano H, Nishio T, Uno T, Hisa Y. PMID: 16356675.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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Distribution of vanilloid receptors in the rat laryngeal innervation. Acta Otolaryngol. 2004 May; 124(4):515-9.
Koike S, Uno T, Bamba H, Shibata T, Okano H, Hisa Y. PMID: 15224886.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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A novel mechanism of intragenic complementation between Phe to Ala calmodulin mutations. J Biochem. 2004 Mar; 135(3):289-95.
Okano H, Asakawa M, Ohya Y. PMID: 15113827.
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PubMed Mentions: Fields:
Translation:
AnimalsCells