Harsha Gouda

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Title(s)	Postdoctoral Scholar, School of Pharmacy and Pharmaceutical Science
School	Vc-health Sciences-schools
Address	9500 Gilman Drive # La Jolla CA 92093
vCard	Download vCard

Bibliographic

publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

Altmetrics Details

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Bridging complexity and accessibility in metabolomics with MetaboApps. Nat Methods. 2026 Jul 24. Mannochio-Russo H, Gonçalves Nunes WD, Zhao HN, Kvitne KE, Xing S, Gouda H, Agongo J, Mohanty I, Charron-Lamoureux V, Rajkumar P, Pakkir Shah AK, Walter A, Krishnaraj R, El Abiead Y, Ferreira PC, Zuffa S, Patan A, Caraballo-Rodríguez AM, Bittremieux W, Petras D, Wang M, Dorrestein PC. PMID: 42498881.

View in: PubMed Mentions: Fields:
Cli Clinical Laboratory Techniques
FoodScribe: an open-source semantic framework for nutrient estimation from free-text dietary records. medRxiv. 2026 Jul 17. Gouda H, Sala-Climent M, Agongo J, Gaikwad SP, Nattakom A, Zhao HN, Xing S, Boland BS, Holt T, Guma M, Dorrestein PC. PMID: 42528607; PMCID: PMC13409120.

View in: PubMed Mentions:
Alkamines reveal a hidden layer of steroid and drug metabolism. bioRxiv. 2026 May 15. Agongo J, Panga SR, Xing S, Charron-Lamoureux V, Gouda H, Abiead YE, Nelson MR, Patan A, Terrazas MC, Kvitne KE, Seo JI, Rajkumar P, Giddings S, Mannochio-Russo H, Zemlin J, Mohanty I, Sala-Climent M, Hu Z, Delaray V, Yeboah SK, Zhao HN, Caraballo-Rodríguez AM, Williams CE, Williams CL, Gonçalves Nunes WD, Dorrestein K, Cao J, Shepherd I, Bock R, Roethler N, Jinich A, Burnett LA, Carver J, Devine RN, Arnatt CK, Murray IA, Knight R, Guma M, Hagey LR, Perdew G, Bandeira N, Wang M, Chu H, Siegel D, Dorrestein PC. PMID: 42182470; PMCID: PMC13192845.

View in: PubMed Mentions:
Structure-centric searching enables global mapping of the public metabolome. Nat Biotechnol. 2026 Apr 15. El Abiead Y, Seo JI, Charron-Lamoureux V, Strobel M, Gonçalves Nunes WD, Zhao HN, Kvitne KE, Zuffa S, Mannochio-Russo H, Gouda H, Bez C, Patan A, Xing S, Zemlin J, Mohany I, Agongo J, Caraballo Rodriguez AM, Burnett LA, Deleray V, Pakkir Shah AK, Kalinski JC, Petras D, Alygizakis N, Carver J, Yurekten O, Payne T, Fahy E, Subramaniam S, Vizcaíno JA, Wang M, Dorrestein PC. PMID: 41986697.

View in: PubMed Mentions: Fields:
Bio Biotechnology
Pan-Metabolomics Repository Mapping of the Carnitine Landscape. bioRxiv. 2026 Mar 31. Mannochio-Russo H, Ferreira PC, Kvitne KE, Patan A, Deleray V, Agongo J, Gouda H, Gonçalves Nunes WD, Xing S, Zemlin J, van Faassen M, Reilly ER, Koo I, Patterson AD, Tsunoda SM, Wang M, Siegel D, Burnett LA, Dorrestein PC. PMID: 41959195; PMCID: PMC13060134.

View in: PubMed Mentions:
Navigating the conjugated metabolome. bioRxiv. 2026 Feb 09. Xing S, Patan A, Agongo J, Gouda H, Charron-Lamoureux V, El Abiead Y, Hu Z, Zhao HN, Mohanty I, Zemlin J, Nunes WDG, Burnett LA, Wang M, Siegel D, Dorrestein PC. PMID: 41727094; PMCID: PMC12919067.

View in: PubMed Mentions:
A searchable metadata network graph for microbiome metabolomics. bioRxiv. 2026 Feb 05. Charron-Lamoureux V, Xing S, Patan A, Walker C, Monter RA, Abiead YE, Zhao HN, Patel L, Weng Y, Gonzalez A, Ackermann G, Deleray V, Gandhi V, Mohanty I, Caraballo-Rodriguez AM, Kvitne KE, Zuffa S, Norman A, Martin A, Chin L, Paz-Gonzalez R, Sala-Climent M, Suryawinata N, Zemlin J, Gouda H, Hu Z, Norton G, Rajkumar P, Molina AJ, Bergstrom J, Pinner M, Giddings S, Aron AT, Liang L, Dahesh S, Lamichhane S, Reilly ER, Nizet V, Skrip A, Lukowski AL, Shore SFH, Ghoshal S, Engevik MA, Horvath TD, Renwick S, Agongo J, Marco ML, Mazmanian SK, Wang M, Yang H, McDonald D, Guma M, Stegmann E, Hernandez Perez N, Stincone P, Kemen E, Pakkir Shah AK, Bode L, Petras D, Siegel D, Raffatellu M, Patterson AD, Devkota S, Jinich A, Knight R, Zengler K, Dorrestein PC. PMID: 41676651; PMCID: PMC12889665.

View in: PubMed Mentions:
Retrieval-Augmented Language Models Enable Scalable Chemical Source Classification in Metabolomics Workflows. Anal Chem. 2026 Feb 10; 98(5):3474-3484. Rajkumar P, Tang R, Sapre H, Zemlin J, Deleray V, Seo JI, Mohan S, Xing S, Gouda H, El Abiead Y, Tsunoda SM, Zhao HN, Dorrestein PC. PMID: 41610168; PMCID: PMC12903069.

View in: PubMed Mentions: Fields:
Che Chemistry Techniques
Translation:Humans Animals
Community Curation of Microbial Metabolites Enables Biological Insights of Metabolomics Data. bioRxiv. 2026 Jan 26. Mannochio-Russo H, Gonçalves Nunes WD, Xing S, de Oliveira F, Caraballo-Rodríguez AM, Gomes PWP, Charron-Lamoureux V, Agongo J, Avalon NE, Bui T, Cancelada L, Chevrette MG, Cumsille A, de Araújo MB, De Graeve M, Deleray V, Donia MS, Dzveta MB, El Abiead Y, Ellis RJ, Franklin D, Garg N, Gouda H, Djande CYH, Hiskia A, Ho BN, Hughes CC, Hwang S, Iliakopoulou S, Iudicello JE, Jarmusch AK, Kaloudis T, Koester I, Konkel R, Koolen HHF, Kvitne KE, La Rosa SL, Lam A, Lamichhane S, Lephatsi M, Letendre S, Magyari S, Mazur-Marzec H, McDonald D, Mohanty I, Monge-Loría M, Moore DJ, Veiga TAM, Mulaudzi MS, Nephali L, Nguyen G, Orságh M, Patan A, Pluskal T, Pope PB, de Medeiros LS, Stincone P, Tekel A, Thomas S, Torres RR, Tsunoda SM, Tugizimana F, van Faassen M, Vasquez-Castro F, Vitale GA, Wagner BC, Wang CX, Zervou SK, Zhao HN, Zuffa S, Petras D, McCall LI, Knight R, Wang M, Dorrestein PC. PMID: 41659575; PMCID: PMC12874021.

View in: PubMed Mentions:
Quantitative Food Compounds Enable Dietary Ontology Referencing across 500 Foods and Human Plasma. Anal Chem. 2026 Feb 03; 98(4):3160-3176. Agongo J, Gouda H, McMaugh A, Allaband C, Aghili SM, Sala-Climent M, Xing S, Cao J, Zemlin J, Wang M, Dorrestein K, Holt T, Knight R, Boland BS, Guma M, Dorrestein PC. PMID: 41549429; PMCID: PMC12874208.

View in: PubMed Mentions: Fields:
Che Chemistry Techniques
Translation:Humans
Charting the Undiscovered Metabolome with Synthetic Multiplexing. bioRxiv. 2025 Nov 19. Patan A, Xing S, Charron-Lamoureux V, Hu Z, Deleray V, Agongo J, El Abiead Y, Mannochio-Russo H, Mohanty I, Gouda H, Zemlin J, Rajkumar P, Lee C, Leanos D, Weimann N, Tsuda W, Giddings S, Bui T, Kvitne KE, Zhao HN, Zuffa S, Nguyen V, Andrade A, Gonçalves Nunes WD, Caraballo-Rodríguez AM, Caetano David L, Carver J, Bandeira N, Wang M, Burnett LA, Siegel D, Dorrestein PC. PMID: 41332743; PMCID: PMC12667992.

View in: PubMed Mentions:
Learning molecular fingerprints of foods to decode dietary intake. Res Sq. 2025 Oct 15. Dorrestein P, Gouda H, Agongo J, Kelly P, Sala-Climent M, Nunes WG, Gkikas K, Xing S, Deleray V, Wang C, Charron-Lamoureux V, Zhao HN, Mohanty I, McMaugh A, Sharma M, Nguyen A, Fleming J, Wang M, Rattray N, Russell R, Gerasimidis K, Guma M. PMID: 41282223; PMCID: PMC12633204.

View in: PubMed Mentions:
The mass spectrometry of microbiome-mediated metabolism of food: challenges and opportunities. Curr Opin Microbiol. 2025 Sep; 87:102640. Gouda H, Agongo J, Caraballo-Rodríguez AM, Dorrestein PC. PMID: 40782416.

View in: PubMed Mentions: 1 Fields:
Mic Microbiology
Translation:Humans Animals Cells
Differential utilization of vitamin B12-dependent and independent pathways for propionate metabolism across human cells. J Biol Chem. 2024 09; 300(9):107662. Gouda H, Ji Y, Rath S, Watkins D, Rosenblatt D, Mootha V, Jones JW, Banerjee R. PMID: 39128713; PMCID: PMC11408853.

View in: PubMed Mentions: 7 Fields:
Bio Biochemistry
Translation:Humans Cells
Architecture of the human G-protein-methylmalonyl-CoA mutase nanoassembly for B 12 delivery and repair. bioRxiv. 2023 Mar 23. Mascarenhas R, Ruetz M, Gouda H, Heitman N, Yaw M, Banerjee R. PMID: 36993209; PMCID: PMC10055420.

View in: PubMed Mentions:
Itaconyl-CoA forms a stable biradical in methylmalonyl-CoA mutase and derails its activity and repair. Science. 2019 11 01; 366(6465):589-593. Ruetz M, Campanello GC, Purchal M, Shen H, McDevitt L, Gouda H, Wakabayashi S, Zhu J, Rubin EJ, Warncke K, Mootha VK, Koutmos M, Banerjee R. PMID: 31672889; PMCID: PMC7070230.

View in: PubMed Mentions: 65 Fields:
Sci Science
Translation:Humans Cells
Sacrificial Cobalt-Carbon Bond Homolysis in Coenzyme B12 as a Cofactor Conservation Strategy. J Am Chem Soc. 2018 10 17; 140(41):13205-13208. Campanello GC, Ruetz M, Dodge GJ, Gouda H, Gupta A, Twahir UT, Killian MM, Watkins D, Rosenblatt DS, Brunold TC, Warncke K, Smith JL, Banerjee R. PMID: 30282455; PMCID: PMC6743335.

View in: PubMed Mentions: 18 Fields:
Che Chemistry
Translation:Humans Cells