George Thomas

Title(s)GEOGRAPHIC INFO SYS PROGR 2, Integrative Oceanography Division
SchoolVc-marine Sciences
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Raman spectroscopy of proteins and nucleoproteins. Curr Protoc Protein Sci. 2013; Chapter 17:Unit17.8. Nemecek D, Stepanek J, Thomas GJ. PMID: 23377849.
      View in: PubMed   Mentions: 2     Fields:    
    2. A structural model for the single-stranded DNA genome of filamentous bacteriophage Pf1. Biochemistry. 2010 Mar 02; 49(8):1737-43. Tsuboi M, Tsunoda M, Overman SA, Benevides JM, Thomas GJ. PMID: 20078135.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    3. Raman tensors and their application in structural studies of biological systems. Proc Jpn Acad Ser B Phys Biol Sci. 2009; 85(3):83-97. Tsuboi M, Benevides JM, Thomas GJ. PMID: 19282645.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    4. Unfolding thermodynamics of the Delta-domain in the prohead I subunit of phage HK97: determination by factor analysis of Raman spectra. J Mol Biol. 2009 Jan 16; 385(2):628-41. Nemecek D, Overman SA, Hendrix RW, Thomas GJ. PMID: 18983851.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    5. Assembly architecture and DNA binding of the bacteriophage P22 terminase small subunit. J Mol Biol. 2008 Nov 14; 383(3):494-501. Nemecek D, Lander GC, Johnson JE, Casjens SR, Thomas GJ. PMID: 18775728.
      View in: PubMed   Mentions: 30     Fields:    Translation:Cells
    6. Mechanisms of specific and nonspecific binding of architectural proteins in prokaryotic gene regulation. Biochemistry. 2008 Mar 25; 47(12):3855-62. Benevides JM, Danahy J, Kawakami J, Thomas GJ. PMID: 18302340.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    7. The Staphylococcus aureus extracellular adherence protein (Eap) adopts an elongated but structured conformation in solution. Protein Sci. 2007 Dec; 16(12):2605-17. Hammel M, Nemecek D, Keightley JA, Thomas GJ, Geisbrecht BV. PMID: 18029416.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    8. Subunit conformations and assembly states of a DNA-translocating motor: the terminase of bacteriophage P22. J Mol Biol. 2007 Nov 30; 374(3):817-36. Nemecek D, Gilcrease EB, Kang S, Prevelige PE, Casjens S, Thomas GJ. PMID: 17945256.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    9. Impact of in vitro assembly defects on in vivo function of the phage P22 portal. Virology. 2007 Sep 01; 365(2):336-45. Sun Y, Overman SA, Thomas GJ. PMID: 17490703.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    10. The complex of ethidium bromide with genomic DNA: structure analysis by polarized Raman spectroscopy. Biophys J. 2007 Feb 01; 92(3):928-34. Tsuboi M, Benevides JM, Thomas GJ. PMID: 17098786.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    11. The structure of a filamentous bacteriophage. J Mol Biol. 2006 Aug 11; 361(2):209-15. Wang YA, Yu X, Overman S, Tsuboi M, Thomas GJ, Egelman EH. PMID: 16843489.
      View in: PubMed   Mentions: 28     Fields:    Translation:Cells
    12. Structural perturbations induced in linear and circular DNA by the architectural protein HU from Bacillus stearothermophilus. Biochemistry. 2006 Apr 25; 45(16):5359-66. Benevides JM, Serban D, Thomas GJ. PMID: 16618125.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    13. Structural details of the thermophilic filamentous bacteriophage PH75 determined by polarized Raman microspectroscopy. Biochemistry. 2005 Mar 29; 44(12):4861-9. Tsuboi M, Benevides JM, Bondre P, Thomas GJ. PMID: 15779912.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    14. Structural characterization of the filamentous bacteriophage PH75 from Thermus thermophilus by Raman and UV-resonance Raman spectroscopy. Biochemistry. 2005 Mar 01; 44(8):3091-100. Overman SA, Bondre P, Maiti NC, Thomas GJ. PMID: 15723554.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    15. Local conformational changes induced in B-DNA by ethidium intercalation. Biochemistry. 2005 Mar 01; 44(8):2993-9. Benevides JM, Thomas GJ. PMID: 15723542.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    16. Membrane structure and interactions with protein and DNA in bacteriophage PRD1. Nature. 2004 Nov 04; 432(7013):122-5. Cockburn JJ, Abrescia NG, Grimes JM, Sutton GC, Diprose JM, Benevides JM, Thomas GJ, Bamford JK, Bamford DH, Stuart DI. PMID: 15525993.
      View in: PubMed   Mentions: 47     Fields:    Translation:Cells
    17. Raman spectroscopy of proteins. Curr Protoc Protein Sci. 2004 Nov; Chapter 17:Unit 17.8. Hanna RF, Ward TJ, Chow DS, Lagana SM, Moreira RK, Emond JC, Weintraub JL, Prince MR, Benevides JM, Overman SA, Thomas GJ. PMID: 18429253.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    18. Effects of virion and salt concentrations on the Raman signatures of filamentous phages fd, Pf1, Pf3, and PH75. Biochemistry. 2004 Oct 19; 43(41):13129-36. Overman SA, Kristensen DM, Bondre P, Hewitt B, Thomas GJ. PMID: 15476406.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    19. Domain structures and roles in bacteriophage HK97 capsid assembly and maturation. Biochemistry. 2004 May 11; 43(18):5428-36. Benevides JM, Bondre P, Duda RL, Hendrix RW, Thomas GJ. PMID: 15122908.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    20. Enzymatic mechanism of RNA translocation in double-stranded RNA bacteriophages. J Biol Chem. 2004 Jan 09; 279(2):1343-50. Lísal J, Kainov DE, Bamford DH, Thomas GJ, Tuma R. PMID: 14530266.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    21. RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein. J Biol Chem. 2003 Nov 28; 278(48):48084-91. Kainov DE, Pirttimaa M, Tuma R, Butcher SJ, Thomas GJ, Bamford DH, Makeyev EV. PMID: 12966097.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    22. HU protein employs similar mechanisms of minor-groove recognition in binding to different B-DNA sites: demonstration by Raman spectroscopy. Biochemistry. 2003 Jun 24; 42(24):7390-9. Serban D, Benevides JM, Thomas GJ. PMID: 12809494.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    23. Structure and dynamics of the DNA-binding protein HU of B. stearothermophilus investigated by Raman and ultraviolet-resonance Raman spectroscopy. Protein Sci. 2003 Apr; 12(4):861-70. Serban D, Arcineigas SF, Vorgias CE, Thomas GJ. PMID: 12649443.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    24. Structural roles of subunit cysteines in the folding and assembly of the DNA packaging machine (portal) of bacteriophage P22. Biochemistry. 2003 Apr 01; 42(12):3437-45. Rodríguez-Casado A, Thomas GJ. PMID: 12653547.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    25. Orientation and interactions of an essential tryptophan (Trp-38) in the capsid subunit of Pf3 filamentous virus. Biophys J. 2003 Mar; 84(3):1969-76. Tsuboi M, Overman SA, Nakamura K, Rodriguez-Casado A, Thomas GJ. PMID: 12609899.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    26. Protein and DNA residue orientations in the filamentous virus Pf1 determined by polarized Raman and polarized FTIR spectroscopy. Biochemistry. 2003 Feb 04; 42(4):940-50. Tsuboi M, Kubo Y, Ikeda T, Overman SA, Osman O, Thomas GJ. PMID: 12549913.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    27. Characterization of subunit-specific interactions in a double-stranded RNA virus: Raman difference spectroscopy of the phi6 procapsid. Biochemistry. 2002 Oct 08; 41(40):11946-53. Benevides JM, Juuti JT, Tuma R, Bamford DH, Thomas GJ. PMID: 12356294.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    28. Secondary structure polymorphism in Oxytricha nova telomeric DNA. Nucleic Acids Res. 2002 Sep 15; 30(18):3981-91. Krafft C, Benevides JM, Thomas GJ. PMID: 12235382.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    29. Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA. Nucleic Acids Res. 2002 Sep 01; 30(17):3767-77. Movileanu L, Benevides JM, Thomas GJ. PMID: 12202762.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    30. Temperature dependence of the Raman spectrum of DNA. II. Raman signatures of premelting and melting transitions of poly(dA).poly(dT) and comparison with poly(dA-dT).poly(dA-dT). Biopolymers. 2002 Mar; 63(3):181-94. Movileanu L, Benevides JM, Thomas GJ. PMID: 11787006.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    31. DNA secondary structure and Raman markers of supercoiling in Escherichia coli plasmid pUC19. Biochemistry. 2002 Jan 22; 41(3):847-53. Serban D, Benevides JM, Thomas GJ. PMID: 11790106.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    32. Insulin regulation of insulin-like growth factor-binding protein-1 gene expression is dependent on the mammalian target of rapamycin, but independent of ribosomal S6 kinase activity. J Biol Chem. 2002 Mar 22; 277(12):9889-95. Patel S, Lochhead PA, Rena G, Fumagalli S, Pende M, Kozma SC, Thomas G, Sutherland C. PMID: 11784721.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    33. New structural insights from Raman spectroscopy of proteins and their assemblies. Biopolymers. 2002; 67(4-5):214-25. Thomas GJ. PMID: 12012434.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
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