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Eric Bushong

TitleAssociate Project Scientist
InstitutionUniversity of California San Diego
DepartmentNeurosciences
Address9500 Gilman Drive #0608
La Jolla CA 92093
Phone858-534-0276
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Haberl MG, Churas C, Tindall L, Boassa D, Phan S, Bushong EA, Madany M, Akay R, Deerinck TJ, Peltier ST, Ellisman MH. CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation. Nat Methods. 2018 Sep; 15(9):677-680. PMID: 30171236.
      View in: PubMed
    2. Katchalski T, Case T, Kim KY, Ramachandra R, Bushong EA, Deerinck TJ, Haberl MG, Mackey MR, Peltier S, Castillon GA, Fujikawa N, Lawrence AR, Ellisman MH. Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors. Sci Rep. 2018 May 15; 8(1):7553. PMID: 29765060.
      View in: PubMed
    3. Tsang TK, Bushong EA, Boassa D, Hu J, Romoli B, Phan S, Dulcis D, Su CY, Ellisman MH. High-quality ultrastructural preservation using cryofixation for 3D electron microscopy of genetically labeled tissues. Elife. 2018 May 11; 7. PMID: 29749931.
      View in: PubMed
    4. Deerinck TJ, Shone TM, Bushong EA, Ramachandra R, Peltier ST, Ellisman MH. High-performance serial block-face SEM of nonconductive biological samples enabled by focal gas injection-based charge compensation. J Microsc. 2018 May; 270(2):142-149. PMID: 29194648.
      View in: PubMed
    5. Petersen MA, Ryu JK, Chang KJ, Etxeberria A, Bardehle S, Mendiola AS, Kamau-Devers W, Fancy SPJ, Thor A, Bushong EA, Baeza-Raja B, Syme CA, Wu MD, Rios Coronado PE, Meyer-Franke A, Yahn S, Pous L, Lee JK, Schachtrup C, Lassmann H, Huang EJ, Han MH, Absinta M, Reich DS, Ellisman MH, Rowitch DH, Chan JR, Akassoglou K. Fibrinogen Activates BMP Signaling in Oligodendrocyte Progenitor Cells and Inhibits Remyelination after Vascular Damage. Neuron. 2017 Dec 06; 96(5):1003-1012.e7. PMID: 29103804.
      View in: PubMed
    6. Sando R, Bushong E, Zhu Y, Huang M, Considine C, Phan S, Ju S, Uytiepo M, Ellisman M, Maximov A. Assembly of Excitatory Synapses in the Absence of Glutamatergic Neurotransmission. Neuron. 2017 Apr 19; 94(2):312-321.e3. PMID: 28426966.
      View in: PubMed
    7. Su FY, Bushong EA, Deerinck TJ, Seo K, Herrera S, Graeve OA, Kisailus D, Lubarda VA, McKittrick J. Spines of the porcupine fish: Structure, composition, and mechanical properties. J Mech Behav Biomed Mater. 2017 09; 73:38-49. PMID: 28274703.
      View in: PubMed
    8. Cao M, Wu Y, Ashrafi G, McCartney AJ, Wheeler H, Bushong EA, Boassa D, Ellisman MH, Ryan TA, De Camilli P. Parkinson Sac Domain Mutation in Synaptojanin 1 Impairs Clathrin Uncoating at Synapses and Triggers Dystrophic Changes in Dopaminergic Axons. Neuron. 2017 Feb 22; 93(4):882-896.e5. PMID: 28231468.
      View in: PubMed
    9. de Vivo L, Bellesi M, Marshall W, Bushong EA, Ellisman MH, Tononi G, Cirelli C. Ultrastructural evidence for synaptic scaling across the wake/sleep cycle. Science. 2017 02 03; 355(6324):507-510. PMID: 28154076.
      View in: PubMed
    10. Ilouz R, Lev-Ram V, Bushong EA, Stiles TL, Friedmann-Morvinski D, Douglas C, Goldberg JL, Ellisman MH, Taylor SS. Isoform-specific subcellular localization and function of protein kinase A identified by mosaic imaging of mouse brain. Elife. 2017 01 12; 6. PMID: 28079521.
      View in: PubMed
    11. Pipkin JE, Bushong EA, Ellisman MH, Kristan WB. Patterns and distribution of presynaptic and postsynaptic elements within serial electron microscopic reconstructions of neuronal arbors from the medicinal leech Hirudo verbana. J Comp Neurol. 2016 Dec 15; 524(18):3677-3695. PMID: 27636374.
      View in: PubMed
    12. Gillies AR, Chapman MA, Bushong EA, Deerinck TJ, Ellisman MH, Lieber RL. High resolution three-dimensional reconstruction of fibrotic skeletal muscle extracellular matrix. J Physiol. 2017 Feb 15; 595(4):1159-1171. PMID: 27859324.
      View in: PubMed
    13. Adams SR, Mackey MR, Ramachandra R, Palida Lemieux SF, Steinbach P, Bushong EA, Butko MT, Giepmans BNG, Ellisman MH, Tsien RY. Multicolor Electron Microscopy for Simultaneous Visualization of Multiple Molecular Species. Cell Chem Biol. 2016 Nov 17; 23(11):1417-1427. PMID: 27818300.
      View in: PubMed
    14. Bouwer JC, Deerinck TJ, Bushong E, Astakhov V, Ramachandra R, Peltier ST, Ellisman MH. Deceleration of probe beam by stage bias potential improves resolution of serial block-face scanning electron microscopic images. Adv Struct Chem Imaging. 2017; 2(1):11. PMID: 27695667.
      View in: PubMed
    15. Ou HD, Deerinck TJ, Bushong E, Ellisman MH, O'Shea CC. Corrigendum to 'Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy' [Methods 90 (2015) 39-48]. Methods. 2016 Jul 15; 104:206. PMID: 27221672.
      View in: PubMed
    16. Moss J, Gebara E, Bushong EA, Sánchez-Pascual I, O'Laoi R, El M'Ghari I, Kocher-Braissant J, Ellisman MH, Toni N. Fine processes of Nestin-GFP-positive radial glia-like stem cells in the adult dentate gyrus ensheathe local synapses and vasculature. Proc Natl Acad Sci U S A. 2016 May 03; 113(18):E2536-45. PMID: 27091993; PMCID: PMC4983830 [Available on 11/03/16].
    17. Jung JY, Naleway SE, Yaraghi NA, Herrera S, Sherman VR, Bushong EA, Ellisman MH, Kisailus D, McKittrick J. Structural analysis of the tongue and hyoid apparatus in a woodpecker. Acta Biomater. 2016 06; 37:1-13. PMID: 27000554.
      View in: PubMed
    18. Mills EA, Davis CH, Bushong EA, Boassa D, Kim KY, Ellisman MH, Marsh-Armstrong N. Astrocytes phagocytose focal dystrophies from shortening myelin segments in the optic nerve of Xenopus laevis at metamorphosis. Proc Natl Acad Sci U S A. 2015 Aug 18; 112(33):10509-14. PMID: 26240339; PMCID: PMC4547286.
    19. Ou HD, Deerinck TJ, Bushong E, Ellisman MH, O'Shea CC. Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy. Methods. 2015 Nov 15; 90:39-48. PMID: 26066760; PMCID: PMC4655137 [Available on 11/15/16].
    20. Bushong EA, Johnson DD, Kim KY, Terada M, Hatori M, Peltier ST, Panda S, Merkle A, Ellisman MH. X-ray microscopy as an approach to increasing accuracy and efficiency of serial block-face imaging for correlated light and electron microscopy of biological specimens. Microsc Microanal. 2015 Feb; 21(1):231-8. PMID: 25392009; PMCID: PMC4415271.
    21. Perez AJ, Seyedhosseini M, Deerinck TJ, Bushong EA, Panda S, Tasdizen T, Ellisman MH. A workflow for the automatic segmentation of organelles in electron microscopy image stacks. Front Neuroanat. 2014; 8:126. PMID: 25426032; PMCID: PMC4224098.
    22. Gillies AR, Bushong EA, Deerinck TJ, Ellisman MH, Lieber RL. Three-dimensional reconstruction of skeletal muscle extracellular matrix ultrastructure. Microsc Microanal. 2014 Dec; 20(6):1835-40. PMID: 25275291; PMCID: PMC4267978.
    23. Davis CH, Kim KY, Bushong EA, Mills EA, Boassa D, Shih T, Kinebuchi M, Phan S, Zhou Y, Bihlmeyer NA, Nguyen JV, Jin Y, Ellisman MH, Marsh-Armstrong N. Transcellular degradation of axonal mitochondria. Proc Natl Acad Sci U S A. 2014 Jul 01; 111(26):9633-8. PMID: 24979790; PMCID: PMC4084443.
    24. Haustein MD, Kracun S, Lu XH, Shih T, Jackson-Weaver O, Tong X, Xu J, Yang XW, O'Dell TJ, Marvin JS, Ellisman MH, Bushong EA, Looger LL, Khakh BS. Conditions and constraints for astrocyte calcium signaling in the hippocampal mossy fiber pathway. Neuron. 2014 Apr 16; 82(2):413-29. PMID: 24742463; PMCID: PMC4086217.
    25. Ramachandra R, Bouwer JC, Mackey MR, Bushong E, Peltier ST, Xuong NH, Ellisman MH. Improving signal to noise in labeled biological specimens using energy-filtered TEM of sections with a drift correction strategy and a direct detection device. Microsc Microanal. 2014 Jun; 20(3):706-14. PMID: 24641915; PMCID: PMC4178974.
    26. Wilke SA, Raam T, Antonios JK, Bushong EA, Koo EH, Ellisman MH, Ghosh A. Specific disruption of hippocampal mossy fiber synapses in a mouse model of familial Alzheimer's disease. PLoS One. 2014; 9(1):e84349. PMID: 24454724; PMCID: PMC3890281.
    27. Wong J, Baddeley D, Bushong EA, Yu Z, Ellisman MH, Hoshijima M, Soeller C. Nanoscale distribution of ryanodine receptors and caveolin-3 in mouse ventricular myocytes: dilation of t-tubules near junctions. Biophys J. 2013 Jun 04; 104(11):L22-4. PMID: 23746531; PMCID: PMC3672889.
    28. Lu W, Bushong EA, Shih TP, Ellisman MH, Nicoll RA. The cell-autonomous role of excitatory synaptic transmission in the regulation of neuronal structure and function. Neuron. 2013 May 08; 78(3):433-9. PMID: 23664612; PMCID: PMC3666354.
    29. Shigetomi E, Bushong EA, Haustein MD, Tong X, Jackson-Weaver O, Kracun S, Xu J, Sofroniew MV, Ellisman MH, Khakh BS. Imaging calcium microdomains within entire astrocyte territories and endfeet with GCaMPs expressed using adeno-associated viruses. J Gen Physiol. 2013 May; 141(5):633-47. PMID: 23589582; PMCID: PMC3639581.
    30. Boassa D, Berlanga ML, Yang MA, Terada M, Hu J, Bushong EA, Hwang M, Masliah E, George JM, Ellisman MH. Mapping the subcellular distribution of a-synuclein in neurons using genetically encoded probes for correlated light and electron microscopy: implications for Parkinson's disease pathogenesis. J Neurosci. 2013 Feb 06; 33(6):2605-15. PMID: 23392688; PMCID: PMC3711410.
    31. Wilke SA, Antonios JK, Bushong EA, Badkoobehi A, Malek E, Hwang M, Terada M, Ellisman MH, Ghosh A. Deconstructing complexity: serial block-face electron microscopic analysis of the hippocampal mossy fiber synapse. J Neurosci. 2013 Jan 09; 33(2):507-22. PMID: 23303931; PMCID: PMC3756657.
    32. Friedmann-Morvinski D, Bushong EA, Ke E, Soda Y, Marumoto T, Singer O, Ellisman MH, Verma IM. Dedifferentiation of neurons and astrocytes by oncogenes can induce gliomas in mice. Science. 2012 Nov 23; 338(6110):1080-4. PMID: 23087000; PMCID: PMC3595315.
    33. Hatori M, Vollmers C, Zarrinpar A, DiTacchio L, Bushong EA, Gill S, Leblanc M, Chaix A, Joens M, Fitzpatrick JA, Ellisman MH, Panda S. Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet. Cell Metab. 2012 Jun 06; 15(6):848-60. PMID: 22608008; PMCID: PMC3491655.
    34. Foo LC, Allen NJ, Bushong EA, Ventura PB, Chung WS, Zhou L, Cahoy JD, Daneman R, Zong H, Ellisman MH, Barres BA. Development of a method for the purification and culture of rodent astrocytes. Neuron. 2011 Sep 08; 71(5):799-811. PMID: 21903074; PMCID: PMC3172573.
    35. Williams ME, Wilke SA, Daggett A, Davis E, Otto S, Ravi D, Ripley B, Bushong EA, Ellisman MH, Klein G, Ghosh A. Cadherin-9 regulates synapse-specific differentiation in the developing hippocampus. Neuron. 2011 Aug 25; 71(4):640-55. PMID: 21867881.
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    36. Bagnall MW, Hull C, Bushong EA, Ellisman MH, Scanziani M. Multiple clusters of release sites formed by individual thalamic afferents onto cortical interneurons ensure reliable transmission. Neuron. 2011 Jul 14; 71(1):180-94. PMID: 21745647; PMCID: PMC3271052.
    37. Berlanga ML, Phan S, Bushong EA, Wu S, Kwon O, Phung BS, Lamont S, Terada M, Tasdizen T, Martone ME, Ellisman MH. Three-dimensional reconstruction of serial mouse brain sections: solution for flattening high-resolution large-scale mosaics. Front Neuroanat. 2011; 5:17. PMID: 21629828; PMCID: PMC3096995.
    38. Nguyen JV, Soto I, Kim KY, Bushong EA, Oglesby E, Valiente-Soriano FJ, Yang Z, Davis CH, Bedont JL, Son JL, Wei JO, Buchman VL, Zack DJ, Vidal-Sanz M, Ellisman MH, Marsh-Armstrong N. Myelination transition zone astrocytes are constitutively phagocytic and have synuclein dependent reactivity in glaucoma. Proc Natl Acad Sci U S A. 2011 Jan 18; 108(3):1176-81. PMID: 21199938.
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    39. Kenyon KA, Bushong EA, Mauer AS, Strehler EE, Weinberg RJ, Burette AC. Cellular and subcellular localization of the neuron-specific plasma membrane calcium ATPase PMCA1a in the rat brain. J Comp Neurol. 2010 Aug 15; 518(16):3169-83. PMID: 20575074; PMCID: PMC2894304.
    40. Jinno S, Klausberger T, Marton LF, Dalezios Y, Roberts JD, Fuentealba P, Bushong EA, Henze D, Buzsáki G, Somogyi P. Neuronal diversity in GABAergic long-range projections from the hippocampus. J Neurosci. 2007 Aug 15; 27(33):8790-804. PMID: 17699661; PMCID: PMC2270609.
    41. Toni N, Teng EM, Bushong EA, Aimone JB, Zhao C, Consiglio A, van Praag H, Martone ME, Ellisman MH, Gage FH. Synapse formation on neurons born in the adult hippocampus. Nat Neurosci. 2007 Jun; 10(6):727-34. PMID: 17486101.
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    42. Wilhelmsson U, Bushong EA, Price DL, Smarr BL, Phung V, Terada M, Ellisman MH, Pekny M. Redefining the concept of reactive astrocytes as cells that remain within their unique domains upon reaction to injury. Proc Natl Acad Sci U S A. 2006 Nov 14; 103(46):17513-8. PMID: 17090684; PMCID: PMC1859960.
    43. Wilhelmsson U, Li L, Pekna M, Berthold CH, Blom S, Eliasson C, Renner O, Bushong E, Ellisman M, Morgan TE, Pekny M. Absence of glial fibrillary acidic protein and vimentin prevents hypertrophy of astrocytic processes and improves post-traumatic regeneration. J Neurosci. 2004 May 26; 24(21):5016-21. PMID: 15163694.
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    44. Bushong EA, Martone ME, Ellisman MH. Maturation of astrocyte morphology and the establishment of astrocyte domains during postnatal hippocampal development. Int J Dev Neurosci. 2004 Apr; 22(2):73-86. PMID: 15036382.
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    45. Bushong EA, Martone ME, Ellisman MH. Examination of the relationship between astrocyte morphology and laminar boundaries in the molecular layer of adult dentate gyrus. J Comp Neurol. 2003 Jul 21; 462(2):241-51. PMID: 12794746.
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    46. Bushong EA, Martone ME, Jones YZ, Ellisman MH. Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains. J Neurosci. 2002 Jan 01; 22(1):183-92. PMID: 11756501.
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