David Welkie

TitlePostdoctoral Scholar
InstitutionUniversity of California San Diego
DepartmentCenter for Circadian Biology
Address9500 Gilman Drive #0116
La Jolla CA 92093
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    1. Broddrick JT, Welkie DG, Jallet D, Golden SS, Peers G, Palsson BO. Predicting the metabolic capabilities of Synechococcus elongatus PCC 7942 adapted to different light regimes. Metab Eng. 2018 Nov 13; 52:42-56. PMID: 30439494.
      View in: PubMed
    2. Welkie DG, Rubin BE, Chang YG, Diamond S, Rifkin SA, LiWang A, Golden SS. Genome-wide fitness assessment during diurnal growth reveals an expanded role of the cyanobacterial circadian clock protein KaiA. Proc Natl Acad Sci U S A. 2018 Jul 10. PMID: 29991601.
      View in: PubMed
    3. Rubin BE, Huynh TN, Welkie DG, Diamond S, Simkovsky R, Pierce EC, Taton A, Lowe LC, Lee JJ, Rifkin SA, Woodward JJ, Golden SS. High-throughput interaction screens illuminate the role of c-di-AMP in cyanobacterial nighttime survival. PLoS Genet. 2018 Apr; 14(4):e1007301. PMID: 29608558.
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    4. Broddrick JT, Rubin BE, Welkie DG, Du N, Mih N, Diamond S, Lee JJ, Golden SS, Palsson BO. Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis. Proc Natl Acad Sci U S A. 2016 12 20; 113(51):E8344-E8353. PMID: 27911809.
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    5. Welkie DG, Lee BH, Sherman LA. Altering the Structure of Carbohydrate Storage Granules in the Cyanobacterium Synechocystis sp. Strain PCC 6803 through Branching-Enzyme Truncations. J Bacteriol. 2015 Dec 14; 198(4):701-10. PMID: 26668264; PMCID: PMC4751808.
    6. Welkie D, Zhang X, Markillie ML, Taylor R, Orr G, Jacobs J, Bhide K, Thimmapuram J, Gritsenko M, Mitchell H, Smith RD, Sherman LA. Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light-dark cycle. BMC Genomics. 2014 Dec 29; 15:1185. PMID: 25547186; PMCID: PMC4320622.
    7. Welkie DG, Sherman DM, Chrisler WB, Orr G, Sherman LA. Analysis of carbohydrate storage granules in the diazotrophic cyanobacterium Cyanothece sp. PCC 7822. Photosynth Res. 2013 Nov; 118(1-2):25-36. PMID: 24142038.
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    8. Shade A, Read JS, Welkie DG, Kratz TK, Wu CH, McMahon KD. Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance. Environ Microbiol. 2011 Oct; 13(10):2752-67. PMID: 21883795.
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    9. Welkie DG, Stevenson DM, Weimer PJ. ARISA analysis of ruminal bacterial community dynamics in lactating dairy cows during the feeding cycle. Anaerobe. 2010 Apr; 16(2):94-100. PMID: 19615457.
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