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Daniel Petras

Title(s)Postdoctoral Scholar, Climate, Atmospheric Sciences, and Physical Oceanography
SchoolVc-marine Sciences
Address9500 Gilman Drive #0751
La Jolla CA 92093
Phone8/8-22--5437
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    Collapse Biography 
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    Hochschule Darmstadt / Universitat Politecnica de ValenciaDipl.-Ing.(FH)2012Biotechnology
    Technische Universitaet BerlinDr. rer. nat.2016Biological Chemistry

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Feature-based molecular networking in the GNPS analysis environment. Nat Methods. 2020 Sep; 17(9):905-908. Nothias LF, Petras D, Schmid R, Dührkop K, Rainer J, Sarvepalli A, Protsyuk I, Ernst M, Tsugawa H, Fleischauer M, Aicheler F, Aksenov AA, Alka O, Allard PM, Barsch A, Cachet X, Caraballo-Rodriguez AM, Da Silva RR, Dang T, Garg N, Gauglitz JM, Gurevich A, Isaac G, Jarmusch AK, Kameník Z, Kang KB, Kessler N, Koester I, Korf A, Le Gouellec A, Ludwig M, Martin H C, McCall LI, McSayles J, Meyer SW, Mohimani H, Morsy M, Moyne O, Neumann S, Neuweger H, Nguyen NH, Nothias-Esposito M, Paolini J, Phelan VV, Pluskal T, Quinn RA, Rogers S, Shrestha B, Tripathi A, van der Hooft JJJ, Vargas F, Weldon KC, Witting M, Yang H, Zhang Z, Zubeil F, Kohlbacher O, Böcker S, Alexandrov T, Bandeira N, Wang M, Dorrestein PC. PMID: 32839597.
      View in: PubMed   Mentions: 4     Fields:    
    2. ReDU: a framework to find and reanalyze public mass spectrometry data. Nat Methods. 2020 Aug 17. Jarmusch AK, Wang M, Aceves CM, Advani RS, Aguirre S, Aksenov AA, Aleti G, Aron AT, Bauermeister A, Bolleddu S, Bouslimani A, Caraballo Rodriguez AM, Chaar R, Coras R, Elijah EO, Ernst M, Gauglitz JM, Gentry EC, Husband M, Jarmusch SA, Jones KL, Kamenik Z, Le Gouellec A, Lu A, McCall LI, McPhail KL, Meehan MJ, Melnik AV, Menezes RC, Montoya Giraldo YA, Nguyen NH, Nothias LF, Nothias-Esposito M, Panitchpakdi M, Petras D, Quinn RA, Sikora N, van der Hooft JJJ, Vargas F, Vrbanac A, Weldon KC, Knight R, Bandeira N, Dorrestein PC. PMID: 32807955.
      View in: PubMed   Mentions:    Fields:    
    3. Reproducible molecular networking of untargeted mass spectrometry data using GNPS. Nat Protoc. 2020 06; 15(6):1954-1991. Aron AT, Gentry EC, McPhail KL, Nothias LF, Nothias-Esposito M, Bouslimani A, Petras D, Gauglitz JM, Sikora N, Vargas F, van der Hooft JJJ, Ernst M, Kang KB, Aceves CM, Caraballo-Rodríguez AM, Koester I, Weldon KC, Bertrand S, Roullier C, Sun K, Tehan RM, Boya P CA, Christian MH, Gutiérrez M, Ulloa AM, Tejeda Mora JA, Mojica-Flores R, Lakey-Beitia J, Vásquez-Chaves V, Zhang Y, Calderón AI, Tayler N, Keyzers RA, Tugizimana F, Ndlovu N, Aksenov AA, Jarmusch AK, Schmid R, Truman AW, Bandeira N, Wang M, Dorrestein PC. PMID: 32405051.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    4. Convergent evolution of defensive venom components in spitting cobras. Toxicon. 2020 Apr 20; 177 Suppl 1:S37. Kazandjian T, Petras D, Robinson S, Undheim E, Arbuckle K, Whiteley G, Albulescu LO, Ainsworth S, Wagstaff S, Wüster W, Harrison R, Vetter I, Calvete J, Casewell N. PMID: 32635014.
      View in: PubMed   Mentions:    Fields:    
    5. Large scale top-down venomics - A bird's-eye view of genus wide venom composition. Toxicon. 2020 Apr 20; 177 Suppl 1:S5. Petras D. PMID: 32635065.
      View in: PubMed   Mentions:    Fields:    
    6. Mass spectrometry searches using MASST. Nat Biotechnol. 2020 01; 38(1):23-26. Wang M, Jarmusch AK, Vargas F, Aksenov AA, Gauglitz JM, Weldon K, Petras D, da Silva R, Quinn R, Melnik AV, van der Hooft JJJ, Caraballo-Rodríguez AM, Nothias LF, Aceves CM, Panitchpakdi M, Brown E, Di Ottavio F, Sikora N, Elijah EO, Labarta-Bajo L, Gentry EC, Shalapour S, Kyle KE, Puckett SP, Watrous JD, Carpenter CS, Bouslimani A, Ernst M, Swafford AD, Zúñiga EI, Balunas MJ, Klassen JL, Loomba R, Knight R, Bandeira N, Dorrestein PC. PMID: 31894142.
      View in: PubMed   Mentions: 8     Fields:    
    7. Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages. Food Chem. 2020 Jan 01; 302:125290. Gauglitz JM, Aceves CM, Aksenov AA, Aleti G, Almaliti J, Bouslimani A, Brown EA, Campeau A, Caraballo-Rodríguez AM, Chaar R, da Silva RR, Demko AM, Di Ottavio F, Elijah E, Ernst M, Ferguson LP, Holmes X, Jarmusch AK, Jiang L, Kang KB, Koester I, Kwan B, Li J, Li Y, Melnik AV, Molina-Santiago C, Ni B, Oom AL, Panitchpakdi MW, Petras D, Quinn R, Sikora N, Spengler K, Teke B, Tripathi A, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vrbanac A, Vu AQ, Wang SC, Weldon K, Wilson K, Wozniak JM, Yoon M, Bandeira N, Dorrestein PC. PMID: 31404873.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    8. Intact protein mass spectrometry reveals intraspecies variations in venom composition of a local population of Vipera kaznakovi in Northeastern Turkey. J Proteomics. 2019 05 15; 199:31-50. Petras D, Hempel BF, Göçmen B, Karis M, Whiteley G, Wagstaff SC, Heiss P, Casewell NR, Nalbantsoy A, Süssmuth RD. PMID: 30763806.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    9. Molecular insights into antibiotic resistance - how a binding protein traps albicidin. Nat Commun. 2018 08 06; 9(1):3095. Rostock L, Driller R, Grätz S, Kerwat D, von Eckardstein L, Petras D, Kunert M, Alings C, Schmitt FJ, Friedrich T, Wahl MC, Loll B, Mainz A, Süssmuth RD. PMID: 30082794.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    10. Aspergillus niger is a superior expression host for the production of bioactive fungal cyclodepsipeptides. Fungal Biol Biotechnol. 2018; 5:4. Boecker S, Grätz S, Kerwat D, Adam L, Schirmer D, Richter L, Schütze T, Petras D, Süssmuth RD, Meyer V. PMID: 29507740.
      View in: PubMed   Mentions:
    11. Tundrenone: An Atypical Secondary Metabolite from Bacteria with Highly Restricted Primary Metabolism. J Am Chem Soc. 2018 02 14; 140(6):2002-2006. Puri AW, Mevers E, Ramadhar TR, Petras D, Liu D, Piel J, Dorrestein PC, Greenberg EP, Lidstrom ME, Clardy J. PMID: 29361220.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    12. Transcriptomics-guided bottom-up and top-down venomics of neonate and adult specimens of the arboreal rear-fanged Brown Treesnake, Boiga irregularis, from Guam. J Proteomics. 2018 03 01; 174:71-84. Pla D, Petras D, Saviola AJ, Modahl CM, Sanz L, Pérez A, Juárez E, Frietze S, Dorrestein PC, Mackessy SP, Calvete JJ. PMID: 29292096.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    13. High-resolution liquid chromatography tandem mass spectrometry enables large scale molecular characterization of dissolved organic matter. Frontiers in Marine Science. 2017; (4):405. Daniel Petras, Irina Koester, Ricardo Da Silva, Brandon M Stephens, Andreas Florian Haas, Craig E Nelson, Linda Wegley Kelly, Lihini I Aluwihare, Pieter C Dorrestein.
    14. Significance estimation for large scale metabolomics annotations by spectral matching. Nat Commun. 2017 11 14; 8(1):1494. Scheubert K, Hufsky F, Petras D, Wang M, Nothias LF, Dührkop K, Bandeira N, Dorrestein PC, Böcker S. PMID: 29133785.
      View in: PubMed   Mentions: 16     Fields:    
    15. Meta-mass shift chemical profiling of metabolomes from coral reefs. Proc Natl Acad Sci U S A. 2017 10 31; 114(44):11685-11690. Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL. PMID: 29078340.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    16. Total Synthesis and Biological Assessment of Novel Albicidins Discovered by Mass Spectrometric Networking. Chemistry. 2017 Nov 02; 23(61):15316-15321. von Eckardstein L, Petras D, Dang T, Cociancich S, Sabri S, Grätz S, Kerwat D, Seidel M, Pesic A, Dorrestein PC, Royer M, Weston JB, Süssmuth RD. PMID: 28876492.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    17. The medical threat of mamba envenoming in sub-Saharan Africa revealed by genus-wide analysis of venom composition, toxicity and antivenomics profiling of available antivenoms. J Proteomics. 2018 02 10; 172:173-189. Ainsworth S, Petras D, Engmark M, Süssmuth RD, Whiteley G, Albulescu LO, Kazandjian TD, Wagstaff SC, Rowley P, Wüster W, Dorrestein PC, Arias AS, Gutiérrez JM, Harrison RA, Casewell NR, Calvete JJ. PMID: 28843532.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    18. Combined venom profiling and cytotoxicity screening of the Radde's mountain viper (Montivipera raddei) and Mount Bulgar Viper (Montivipera bulgardaghica) with potent cytotoxicity against human A549 lung carcinoma cells. Toxicon. 2017 Sep 01; 135:71-83. Nalbantsoy A, Hempel BF, Petras D, Heiss P, Göçmen B, Igci N, Yildiz MZ, Süssmuth RD. PMID: 28625888.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    19. Protein-species quantitative venomics: looking through a crystal ball. J Venom Anim Toxins Incl Trop Dis. 2017; 23:27. Calvete JJ, Petras D, Calderón-Celis F, Lomonte B, Encinar JR, Sanz-Medel A. PMID: 28465678.
      View in: PubMed   Mentions:
    20. Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites. Front Plant Sci. 2017; 8:429. Floros DJ, Petras D, Kapono CA, Melnik AV, Ling TJ, Knight R, Dorrestein PC. PMID: 28405197.
      View in: PubMed   Mentions:
    21. From single cells to our planet-recent advances in using mass spectrometry for spatially resolved metabolomics. Curr Opin Chem Biol. 2017 02; 36:24-31. Petras D, Jarmusch AK, Dorrestein PC. PMID: 28086192.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    22. Natural products as mediators of disease. Nat Prod Rep. 2017 Feb 01; 34(2):194-219. Garg N, Luzzatto-Knaan T, Melnik AV, Caraballo-Rodríguez AM, Floros DJ, Petras D, Gregor R, Dorrestein PC, Phelan VV. PMID: 27874907.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    23. Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats. Anal Chem. 2016 11 15; 88(22):10775-10784. Petras D, Nothias LF, Quinn RA, Alexandrov T, Bandeira N, Bouslimani A, Castro-Falcón G, Chen L, Dang T, Floros DJ, Hook V, Garg N, Hoffner N, Jiang Y, Kapono CA, Koester I, Knight R, Leber CA, Ling TJ, Luzzatto-Knaan T, McCall LI, McGrath AP, Meehan MJ, Merritt JK, Mills RH, Morton J, Podvin S, Protsyuk I, Purdy T, Satterfield K, Searles S, Shah S, Shires S, Steffen D, White M, Todoric J, Tuttle R, Wojnicz A, Sapp V, Vargas F, Yang J, Zhang C, Dorrestein PC. PMID: 27732780.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    24. Leader Peptide-Free In Vitro Reconstitution of Microviridin Biosynthesis Enables Design of Synthetic Protease-Targeted Libraries. Angew Chem Int Ed Engl. 2016 08 01; 55(32):9398-401. Reyna-González E, Schmid B, Petras D, Süssmuth RD, Dittmann E. PMID: 27336908.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    25. Top-down venomics of the East African green mamba, Dendroaspis angusticeps, and the black mamba, Dendroaspis polylepis, highlight the complexity of their toxin arsenals. J Proteomics. 2016 09 02; 146:148-64. Petras D, Heiss P, Harrison RA, Süssmuth RD, Calvete JJ. PMID: 27318176.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    26. Deuterium-Labeled Precursor Feeding Reveals a New pABA-Containing Meroterpenoid from the Mango Pathogen Xanthomonas citri pv. mangiferaeindicae. J Nat Prod. 2016 06 24; 79(6):1532-7. Saleh H, Petras D, Mainz A, Kerwat D, Nalbantsoy A, Erzurumlu Y, Süssmuth RD. PMID: 27232656.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    27. Biochemical Dissection of the Natural Diversification of Microcystin Provides Lessons for Synthetic Biology of NRPS. Cell Chem Biol. 2016 04 21; 23(4):462-71. Meyer S, Kehr JC, Mainz A, Dehm D, Petras D, Süssmuth RD, Dittmann E. PMID: 27105282.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    28. The O-Carbamoyl-Transferase Alb15 Is Responsible for the Modification of Albicidin. ACS Chem Biol. 2016 05 20; 11(5):1198-204. Petras D, Kerwat D, Pesic A, Hempel BF, von Eckardstein L, Semsary S, Arasté J, Marguerettaz M, Royer M, Cociancich S, Süssmuth RD. PMID: 26886160.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    29. Mass spectrometry guided venom profiling and bioactivity screening of the Anatolian Meadow Viper, Vipera anatolica. Toxicon. 2015 Dec 01; 107(Pt B):163-74. Göçmen B, Heiss P, Petras D, Nalbantsoy A, Süssmuth RD. PMID: 26385313.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    30. Minimum Information about a Biosynthetic Gene cluster. Nat Chem Biol. 2015 Sep; 11(9):625-31. Medema MH, Kottmann R, Yilmaz P, Cummings M, Biggins JB, Blin K, de Bruijn I, Chooi YH, Claesen J, Coates RC, Cruz-Morales P, Duddela S, Düsterhus S, Edwards DJ, Fewer DP, Garg N, Geiger C, Gomez-Escribano JP, Greule A, Hadjithomas M, Haines AS, Helfrich EJ, Hillwig ML, Ishida K, Jones AC, Jones CS, Jungmann K, Kegler C, Kim HU, Kötter P, Krug D, Masschelein J, Melnik AV, Mantovani SM, Monroe EA, Moore M, Moss N, Nützmann HW, Pan G, Pati A, Petras D, Reen FJ, Rosconi F, Rui Z, Tian Z, Tobias NJ, Tsunematsu Y, Wiemann P, Wyckoff E, Yan X, Yim G, Yu F, Xie Y, Aigle B, Apel AK, Balibar CJ, Balskus EP, Barona-Gómez F, Bechthold A, Bode HB, Borriss R, Brady SF, Brakhage AA, Caffrey P, Cheng YQ, Clardy J, Cox RJ, De Mot R, Donadio S, Donia MS, van der Donk WA, Dorrestein PC, Doyle S, Driessen AJ, Ehling-Schulz M, Entian KD, Fischbach MA, Gerwick L, Gerwick WH, Gross H, Gust B, Hertweck C, Höfte M, Jensen SE, Ju J, Katz L, Kaysser L, Klassen JL, Keller NP, Kormanec J, Kuipers OP, Kuzuyama T, Kyrpides NC, Kwon HJ, Lautru S, Lavigne R, Lee CY, Linquan B, Liu X, Liu W, Luzhetskyy A, Mahmud T, Mast Y, Méndez C, Metsä-Ketelä M, Micklefield J, Mitchell DA, Moore BS, Moreira LM, Müller R, Neilan BA, Nett M, Nielsen J, O'Gara F, Oikawa H, Osbourn A, Osburne MS, Ostash B, Payne SM, Pernodet JL, Petricek M, Piel J, Ploux O, Raaijmakers JM, Salas JA, Schmitt EK, Scott B, Seipke RF, Shen B, Sherman DH, Sivonen K, Smanski MJ, Sosio M, Stegmann E, Süssmuth RD, Tahlan K, Thomas CM, Tang Y, Truman AW, Viaud M, Walton JD, Walsh CT, Weber T, van Wezel GP, Wilkinson B, Willey JM, Wohlleben W, Wright GD, Ziemert N, Zhang C, Zotchev SB, Breitling R, Takano E, Glöckner FO. PMID: 26284661.
      View in: PubMed   Mentions: 171     Fields:    Translation:AnimalsCells
    31. Venom Proteomics of Indonesian King Cobra, Ophiophagus hannah: Integrating Top-Down and Bottom-Up Approaches. J Proteome Res. 2015 Jun 05; 14(6):2539-56. Petras D, Heiss P, Süssmuth RD, Calvete JJ. PMID: 25896403.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    32. What makes Xanthomonas albilineans unique amongst xanthomonads? Front Plant Sci. 2015; 6:289. Pieretti I, Pesic A, Petras D, Royer M, Süssmuth RD, Cociancich S. PMID: 25964795.
      View in: PubMed   Mentions:
    33. The gyrase inhibitor albicidin consists of p-aminobenzoic acids and cyanoalanine. Nat Chem Biol. 2015 Mar; 11(3):195-7. Cociancich S, Pesic A, Petras D, Uhlmann S, Kretz J, Schubert V, Vieweg L, Duplan S, Marguerettaz M, Noëll J, Pieretti I, Hügelland M, Kemper S, Mainz A, Rott P, Royer M, Süssmuth RD. PMID: 25599532.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    34. Hydrolysis of Fatty Acid Esters by Candida Antarctica Lipase B (Novozym435) Dissolved in Anhydrous Triethylamine. ChemCatChem. 2012; 4(12):2050-2054. Braner M, Zielonka S, Grzeschik J, Krah S, Lieb S, Petras D, Wagner X, Ahmed I, Hüttenhain SH.View Publication.
    35. Snake venomics of African spitting cobras: toxin composition and assessment of congeneric cross-reactivity of the pan-African EchiTAb-Plus-ICP antivenom by antivenomics and neutralization approaches. J Proteome Res. 2011 Mar 04; 10(3):1266-80. Petras D, Sanz L, Segura A, Herrera M, Villalta M, Solano D, Vargas M, León G, Warrell DA, Theakston RD, Harrison RA, Durfa N, Nasidi A, Gutiérrez JM, Calvete JJ. PMID: 21171584.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    36. Comparative high-speed profiling of carboxylic acid metabolite levels by differential isotope-coded MALDI mass spectrometry. Anal Chem. 2009 Sep 15; 81(18):7544-51. Koulman A, Petras D, Narayana VK, Wang L, Volmer DA. PMID: 19702295.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
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