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Clarisse Marotz

Title(s)Postdoctoral Scholar, Pediatrics
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Saliva microbiota dynamics and role in metformin-mediated oral squamous cell carcinoma prophylaxis
    NIH/NIDCR F31DE028478Jan 1, 2019 - Dec 30, 2021
    Role: Principal Investigator

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients. mSystems. 2020 Oct 29; 5(6). Salido RA, Morgan SC, Rojas MI, Magallanes CG, Marotz C, DeHoff P, Belda-Ferre P, Aigner S, Kado DM, Yeo GW, Gilbert JA, Laurent L, Rohwer F, Knight R. PMID: 33127739.
      View in: PubMed   Mentions:
    2. Context-aware dimensionality reduction deconvolutes gut microbial community dynamics. Nat Biotechnol. 2020 Aug 31. Martino C, Shenhav L, Marotz CA, Armstrong G, McDonald D, Vázquez-Baeza Y, Morton JT, Jiang L, Dominguez-Bello MG, Swafford AD, Halperin E, Knight R. PMID: 32868914.
      View in: PubMed   Mentions:    Fields:    
    3. Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. Res Sq. 2020 Aug 18. Minich J, Ali F, Marotz C, Belda-Ferre P, Chiang L, Shaffer JP, Carpenter CS, McDonald D, Gilbert J, Allard SM, Allen EE, Knight R, Sweeney DA, Swafford AD. PMID: 32839765.
      View in: PubMed   Mentions:
    4. Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity. bioRxiv. 2020 Aug 18. Martino C, Kellman BP, Sandoval DR, Clausen TM, Marotz CA, Song SJ, Wandro S, Zaramela LS, Salido Benítez RA, Zhu Q, Armingol E, Vázquez-Baeza Y, McDonald D, Sorrentino JT, Taylor B, Belda-Ferre P, Liang C, Zhang Y, Schifanella L, Klatt NR, Havulinna AS, Jousilahti P, Huang S, Haiminen N, Parida L, Kim HC, Swafford AD, Zengler K, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Esko JD, Lewis NE, Knight R. PMID: 32839779.
      View in: PubMed   Mentions:
    5. SARS-CoV-2 Infection Among Symptom-Free Healthcare Workers. medRxiv. 2020 Aug 05. Demmer RT, Ulrich A, Wiggen T, Strickland A, Naumchik B, Kulasingam S, Stovitz SD, Marotz C, Belda-Ferre P, Humphrey G, De Hoff P, Laurent L, Kline S, Knight R. PMID: 32793921.
      View in: PubMed   Mentions:
    6. Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts. NPJ Syst Biol Appl. 2020 Aug 04; 6(1):24. Zuñiga C, Peacock B, Liang B, McCollum G, Irigoyen SC, Tec-Campos D, Marotz C, Weng NC, Zepeda A, Vidalakis G, Mandadi KK, Borneman J, Zengler K. PMID: 32753656.
      View in: PubMed   Mentions:    Fields:    
    7. Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs. medRxiv. 2020 May 18. Minich JJ, Ali F, Marotz C, Belda-Ferre P, Shaffer JP, Carpenter CS, McDonald D, Gilbert JA, Allard SM, Knight R, Sweeney DA, Swafford AD. PMID: 32511552.
      View in: PubMed   Mentions:
    8. Visualizing 'omic feature rankings and log-ratios using Qurro. NAR Genom Bioinform. 2020 Jun; 2(2):lqaa023. Fedarko MW, Martino C, Morton JT, González A, Rahman G, Marotz CA, Minich JJ, Allen EE, Knight R. PMID: 32391521.
      View in: PubMed   Mentions:
    9. Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults. Brain Behav Immun. 2020 Jul; 87:591-602. Kohn JN, Kosciolek T, Marotz C, Aleti G, Guay-Ross RN, Hong SH, Hansen S, Swafford A, Knight R, Hong S. PMID: 32061904.
      View in: PubMed   Mentions:    Fields:    
    10. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 Sep; 37(9):1091. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. PMID: 31399723.
      View in: PubMed   Mentions: 15     Fields:    
    11. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 08; 37(8):852-857. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. PMID: 31341288.
      View in: PubMed   Mentions: 370     Fields:    Translation:Humans
    12. redbiom: a Rapid Sample Discovery and Feature Characterization System. mSystems. 2019 Jun 25; 4(4). McDonald D, Kaehler B, Gonzalez A, DeReus J, Ackermann G, Marotz C, Huttley G, Knight R. PMID: 31239397.
      View in: PubMed   Mentions:
    13. Establishing microbial composition measurement standards with reference frames. Nat Commun. 2019 06 20; 10(1):2719. Morton JT, Marotz C, Washburne A, Silverman J, Zaramela LS, Edlund A, Zengler K, Knight R. PMID: 31222023.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCellsPHPublic Health
    14. Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary. Biotechniques. 2019 07; 67(1):29-32. Marotz C, Sharma A, Humphrey G, Gottel N, Daum C, Gilbert JA, Eloe-Fadrosh E, Knight R. PMID: 31124709.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    15. A Novel Sparse Compositional Technique Reveals Microbial Perturbations. mSystems. 2019 Jan-Feb; 4(1). Martino C, Morton JT, Marotz CA, Thompson LR, Tripathi A, Knight R, Zengler K. PMID: 30801021.
      View in: PubMed   Mentions:
    16. Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations. Trends Microbiol. 2019 02; 27(2):105-117. Eisenhofer R, Minich JJ, Marotz C, Cooper A, Knight R, Weyrich LS. PMID: 30497919.
      View in: PubMed   Mentions: 64     Fields:    Translation:Humans
    17. Are microbiome studies ready for hypothesis-driven research? Curr Opin Microbiol. 2018 08; 44:61-69. Tripathi A, Marotz C, Gonzalez A, Vázquez-Baeza Y, Song SJ, Bouslimani A, McDonald D, Zhu Q, Sanders JG, Smarr L, Dorrestein PC, Knight R. PMID: 30059804.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    18. Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism. Nat Commun. 2018 07 20; 9(1):2872. Zarrinpar A, Chaix A, Xu ZZ, Chang MW, Marotz CA, Saghatelian A, Knight R, Panda S. PMID: 30030441.
      View in: PubMed   Mentions: 28     Fields:    Translation:Animals
    19. American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018 May-Jun; 3(3). McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q, Knight R. PMID: 29795809.
      View in: PubMed   Mentions:
    20. Improving saliva shotgun metagenomics by chemical host DNA depletion. Microbiome. 2018 02 27; 6(1):42. Marotz CA, Sanders JG, Zuniga C, Zaramela LS, Knight R, Zengler K. PMID: 29482639.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    21. Impacts of the Human Gut Microbiome on Therapeutics. Annu Rev Pharmacol Toxicol. 2018 01 06; 58:253-270. Vázquez-Baeza Y, Callewaert C, Debelius J, Hyde E, Marotz C, Morton JT, Swafford A, Vrbanac A, Dorrestein PC, Knight R. PMID: 28968189.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    22. The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study. Psychosom Med. 2017 Oct; 79(8):936-946. Hemmings SMJ, Malan-Müller S, van den Heuvel LL, Demmitt BA, Stanislawski MA, Smith DG, Bohr AD, Stamper CE, Hyde ER, Morton JT, Marotz CA, Siebler PH, Braspenning M, Van Criekinge W, Hoisington AJ, Brenner LA, Postolache TT, McQueen MB, Krauter KS, Knight R, Seedat S, Lowry CA. PMID: 28700459.
      View in: PubMed   Mentions: 22     Fields:    Translation:Humans
    23. DNA extraction for streamlined metagenomics of diverse environmental samples. Biotechniques. 2017 06 01; 62(6):290-293. Marotz C, Amir A, Humphrey G, Gaffney J, Gogul G, Knight R. PMID: 28625159.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCellsPHPublic Health
    24. The Microbiome and Human Biology. Annu Rev Genomics Hum Genet. 2017 08 31; 18:65-86. Knight R, Callewaert C, Marotz C, Hyde ER, Debelius JW, McDonald D, Sogin ML. PMID: 28375652.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimals
    25. Treating Obesity and Metabolic Syndrome with Fecal Microbiota Transplantation. Yale J Biol Med. 2016 09; 89(3):383-388. Marotz CA, Zarrinpar A. PMID: 27698622.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimals
    26. Culturing: Looking it up in our gut. Nat Microbiol. 2016 09 27; 1(10):16169. Marotz C, Knight R. PMID: 27670121.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    27. Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer. Nat Med. 2016 Mar; 22(3):298-305. Beltran H, Prandi D, Mosquera JM, Benelli M, Puca L, Cyrta J, Marotz C, Giannopoulou E, Chakravarthi BV, Varambally S, Tomlins SA, Nanus DM, Tagawa ST, Van Allen EM, Elemento O, Sboner A, Garraway LA, Rubin MA, Demichelis F. PMID: 26855148.
      View in: PubMed   Mentions: 276     Fields:    Translation:HumansCells
    28. SPOP mutation leads to genomic instability in prostate cancer. Elife. 2015 Sep 16; 4. Boysen G, Barbieri CE, Prandi D, Blattner M, Chae SS, Dahija A, Nataraj S, Huang D, Marotz C, Xu L, Huang J, Lecca P, Chhangawala S, Liu D, Zhou P, Sboner A, de Bono JS, Demichelis F, Houvras Y, Rubin MA. PMID: 26374986.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
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