Clarisse Marotz
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Title(s) | Postdoctoral Scholar, Pediatrics |
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School | Vc-health Sciences-schools |
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Address | 9500 Gilman Drive # La Jolla CA 92093
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vCard | Download vCard |
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Research Bibliographic
Altmetrics Details
PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media.
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Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
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Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load. mSystems. 2021 Feb 16; 6(1).
PMID: 33594005.
View in: PubMed Mentions:
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Emergence of an early SARS-CoV-2 epidemic in the United States. medRxiv. 2021 Feb 08.
PMID: 33564781.
View in: PubMed Mentions:
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A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. Biotechniques. 2021 Jan 29.
Shaffer JP, Marotz C, Belda-Ferre P, Martino C, Wandro S, Estaki M, Salido RA, Carpenter CS, Zaramela LS, Minich JJ, Bryant M, Sanders K, Fraraccio S, Ackermann G, Humphrey G, Swafford AD, Miller-Montgomery S, Knight R. PMID: 33512248.
View in: PubMed Mentions: Fields:
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Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. Microbiome. 2021 01 22; 9(1):25.
Minich JJ, Ali F, Marotz C, Belda-Ferre P, Chiang L, Shaffer JP, Carpenter CS, McDonald D, Gilbert J, Allard SM, Allen EE, Knight R, Sweeney DA, Swafford AD. PMID: 33482920.
View in: PubMed Mentions: Fields: Translation: Humans
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Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment. medRxiv. 2020 Nov 22.
Marotz C, Belda-Ferre P, Ali F, Das P, Huang S, Cantrel K, Jiang L, Martino C, Diner R, Rahman G, McDonald D, Armstrong G, Kodera S, Donato S, Ecklu-Mensah G, Gottel N, Salas Garcia M, Chiang L, Salido RA, Shaffer JP, Bryant M, Sanders K, Humphrey G, Ackermann G, Haiminen N, Beck KL, Kim HC, Carrieri AP, Parida L, Vazquez-Baeza Y, Torriani FJ, Knight R, Gilbert J, Sweeney D, Allard SM. PMID: 33236030.
View in: PubMed Mentions:
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A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. bioRxiv. 2020 Nov 14.
Shaffer JP, Marotz C, Belda-Ferre P, Martino C, Wandro S, Estaki M, Salido RA, Carpenter CS, Zaramela LS, Minich JJ, Bryant MB, Sanders K, Fraraccio S, Ackermann G, Humphrey G, Swafford AD, Miller-Montgomery S, Knight R. PMID: 33200135.
View in: PubMed Mentions:
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Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients. mSystems. 2020 Oct 29; 5(6).
Salido RA, Morgan SC, Rojas MI, Magallanes CG, Marotz C, DeHoff P, Belda-Ferre P, Aigner S, Kado DM, Yeo GW, Gilbert JA, Laurent L, Rohwer F, Knight R. PMID: 33127739.
View in: PubMed Mentions:
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Context-aware dimensionality reduction deconvolutes gut microbial community dynamics. Nat Biotechnol. 2020 Aug 31.
Martino C, Shenhav L, Marotz CA, Armstrong G, McDonald D, Vázquez-Baeza Y, Morton JT, Jiang L, Dominguez-Bello MG, Swafford AD, Halperin E, Knight R. PMID: 32868914.
View in: PubMed Mentions: 2 Fields:
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Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. Res Sq. 2020 Aug 18.
Minich J, Ali F, Marotz C, Belda-Ferre P, Chiang L, Shaffer JP, Carpenter CS, McDonald D, Gilbert J, Allard SM, Allen EE, Knight R, Sweeney DA, Swafford AD. PMID: 32839765.
View in: PubMed Mentions:
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Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity. bioRxiv. 2020 Aug 18.
Martino C, Kellman BP, Sandoval DR, Clausen TM, Marotz CA, Song SJ, Wandro S, Zaramela LS, Salido Benítez RA, Zhu Q, Armingol E, Vázquez-Baeza Y, McDonald D, Sorrentino JT, Taylor B, Belda-Ferre P, Liang C, Zhang Y, Schifanella L, Klatt NR, Havulinna AS, Jousilahti P, Huang S, Haiminen N, Parida L, Kim HC, Swafford AD, Zengler K, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Esko JD, Lewis NE, Knight R. PMID: 32839779.
View in: PubMed Mentions:
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SARS-CoV-2 Infection Among Symptom-Free Healthcare Workers. medRxiv. 2020 Aug 05.
Demmer RT, Ulrich A, Wiggen T, Strickland A, Naumchik B, Kulasingam S, Stovitz SD, Marotz C, Belda-Ferre P, Humphrey G, De Hoff P, Laurent L, Kline S, Knight R. PMID: 32793921.
View in: PubMed Mentions:
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Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts. NPJ Syst Biol Appl. 2020 08 04; 6(1):24.
PMID: 32753656.
View in: PubMed Mentions: Fields:
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Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs. medRxiv. 2020 May 18.
Minich JJ, Ali F, Marotz C, Belda-Ferre P, Shaffer JP, Carpenter CS, McDonald D, Gilbert JA, Allard SM, Knight R, Sweeney DA, Swafford AD. PMID: 32511552.
View in: PubMed Mentions:
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Visualizing 'omic feature rankings and log-ratios using Qurro. NAR Genom Bioinform. 2020 Jun; 2(2):lqaa023.
Fedarko MW, Martino C, Morton JT, González A, Rahman G, Marotz CA, Minich JJ, Allen EE, Knight R. PMID: 32391521.
View in: PubMed Mentions:
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Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults. Brain Behav Immun. 2020 07; 87:591-602.
Kohn JN, Kosciolek T, Marotz C, Aleti G, Guay-Ross RN, Hong SH, Hansen S, Swafford A, Knight R, Hong S. PMID: 32061904.
View in: PubMed Mentions: Fields:
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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 Sep; 37(9):1091.
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. PMID: 31399723.
View in: PubMed Mentions: 17 Fields:
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 08; 37(8):852-857.
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. PMID: 31341288.
View in: PubMed Mentions: 526 Fields: Translation: Humans
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redbiom: a Rapid Sample Discovery and Feature Characterization System. mSystems. 2019 Jun 25; 4(4).
McDonald D, Kaehler B, Gonzalez A, DeReus J, Ackermann G, Marotz C, Huttley G, Knight R. PMID: 31239397.
View in: PubMed Mentions:
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Establishing microbial composition measurement standards with reference frames. Nat Commun. 2019 06 20; 10(1):2719.
Morton JT, Marotz C, Washburne A, Silverman J, Zaramela LS, Edlund A, Zengler K, Knight R. PMID: 31222023.
View in: PubMed Mentions: 37 Fields: Translation: HumansCellsPHPublic Health
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Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary. Biotechniques. 2019 07; 67(1):29-32.
Marotz C, Sharma A, Humphrey G, Gottel N, Daum C, Gilbert JA, Eloe-Fadrosh E, Knight R. PMID: 31124709.
View in: PubMed Mentions: 2 Fields: Translation: Cells
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A Novel Sparse Compositional Technique Reveals Microbial Perturbations. mSystems. 2019 Jan-Feb; 4(1).
Martino C, Morton JT, Marotz CA, Thompson LR, Tripathi A, Knight R, Zengler K. PMID: 30801021.
View in: PubMed Mentions:
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Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations. Trends Microbiol. 2019 02; 27(2):105-117.
Eisenhofer R, Minich JJ, Marotz C, Cooper A, Knight R, Weyrich LS. PMID: 30497919.
View in: PubMed Mentions: 82 Fields: Translation: Humans
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Are microbiome studies ready for hypothesis-driven research? Curr Opin Microbiol. 2018 08; 44:61-69.
Tripathi A, Marotz C, Gonzalez A, Vázquez-Baeza Y, Song SJ, Bouslimani A, McDonald D, Zhu Q, Sanders JG, Smarr L, Dorrestein PC, Knight R. PMID: 30059804.
View in: PubMed Mentions: 3 Fields: Translation: HumansAnimals
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Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism. Nat Commun. 2018 07 20; 9(1):2872.
Zarrinpar A, Chaix A, Xu ZZ, Chang MW, Marotz CA, Saghatelian A, Knight R, Panda S. PMID: 30030441.
View in: PubMed Mentions: 35 Fields: Translation: Animals
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American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018 May-Jun; 3(3).
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q, Knight R. PMID: 29795809.
View in: PubMed Mentions:
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Improving saliva shotgun metagenomics by chemical host DNA depletion. Microbiome. 2018 02 27; 6(1):42.
Marotz CA, Sanders JG, Zuniga C, Zaramela LS, Knight R, Zengler K. PMID: 29482639.
View in: PubMed Mentions: 23 Fields: Translation: HumansAnimalsCells
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Impacts of the Human Gut Microbiome on Therapeutics. Annu Rev Pharmacol Toxicol. 2018 01 06; 58:253-270.
Vázquez-Baeza Y, Callewaert C, Debelius J, Hyde E, Marotz C, Morton JT, Swafford A, Vrbanac A, Dorrestein PC, Knight R. PMID: 28968189.
View in: PubMed Mentions: 14 Fields: Translation: HumansAnimalsCells
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The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study. Psychosom Med. 2017 Oct; 79(8):936-946.
Hemmings SMJ, Malan-Müller S, van den Heuvel LL, Demmitt BA, Stanislawski MA, Smith DG, Bohr AD, Stamper CE, Hyde ER, Morton JT, Marotz CA, Siebler PH, Braspenning M, Van Criekinge W, Hoisington AJ, Brenner LA, Postolache TT, McQueen MB, Krauter KS, Knight R, Seedat S, Lowry CA. PMID: 28700459.
View in: PubMed Mentions: 28 Fields: Translation: Humans
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DNA extraction for streamlined metagenomics of diverse environmental samples. Biotechniques. 2017 06 01; 62(6):290-293.
Marotz C, Amir A, Humphrey G, Gaffney J, Gogul G, Knight R. PMID: 28625159.
View in: PubMed Mentions: 19 Fields: Translation: HumansCellsPHPublic Health
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The Microbiome and Human Biology. Annu Rev Genomics Hum Genet. 2017 08 31; 18:65-86.
Knight R, Callewaert C, Marotz C, Hyde ER, Debelius JW, McDonald D, Sogin ML. PMID: 28375652.
View in: PubMed Mentions: 52 Fields: Translation: HumansAnimals
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Treating Obesity and Metabolic Syndrome with Fecal Microbiota Transplantation. Yale J Biol Med. 2016 09; 89(3):383-388.
PMID: 27698622.
View in: PubMed Mentions: 24 Fields: Translation: HumansAnimals
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Culturing: Looking it up in our gut. Nat Microbiol. 2016 09 27; 1(10):16169.
Marotz C, Knight R. PMID: 27670121.
View in: PubMed Mentions: Fields: Translation: Animals
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Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer. Nat Med. 2016 Mar; 22(3):298-305.
Beltran H, Prandi D, Mosquera JM, Benelli M, Puca L, Cyrta J, Marotz C, Giannopoulou E, Chakravarthi BV, Varambally S, Tomlins SA, Nanus DM, Tagawa ST, Van Allen EM, Elemento O, Sboner A, Garraway LA, Rubin MA, Demichelis F. PMID: 26855148.
View in: PubMed Mentions: 305 Fields: Translation: HumansCells
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SPOP mutation leads to genomic instability in prostate cancer. Elife. 2015 Sep 16; 4.
Boysen G, Barbieri CE, Prandi D, Blattner M, Chae SS, Dahija A, Nataraj S, Huang D, Marotz C, Xu L, Huang J, Lecca P, Chhangawala S, Liu D, Zhou P, Sboner A, de Bono JS, Demichelis F, Houvras Y, Rubin MA. PMID: 26374986.
View in: PubMed Mentions: 47 Fields: Translation: HumansAnimalsCells
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Year | Publications |
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2015 | 1 | 2016 | 3 | 2017 | 4 | 2018 | 5 | 2019 | 6 | 2020 | 11 | 2021 | 4 |
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Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
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This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
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