Christopher Churas

Title(s)Sr Bioinfo Analyst, Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Interpretation of cancer mutations using a multiscale map of protein systems. Science. 2021 Oct; 374(6563):eabf3067. Zheng F, Kelly MR, Ramms DJ, Heintschel ML, Tao K, Tutuncuoglu B, Lee JJ, Ono K, Foussard H, Chen M, Herrington KA, Silva E, Liu SN, Chen J, Churas C, Wilson N, Kratz A, Pillich RT, Patel DN, Park J, Kuenzi B, Yu MK, Licon K, Pratt D, Kreisberg JF, Kim M, Swaney DL, Nan X, Fraley SI, Gutkind JS, Krogan NJ, Ideker T. PMID: 34591613.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    2. Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy. Nat Microbiol. 2021 Oct; 6(10):1319-1333. Martin-Sancho L, Tripathi S, Rodriguez-Frandsen A, Pache L, Sanchez-Aparicio M, McGregor MJ, Haas KM, Swaney DL, Nguyen TT, Mamede JI, Churas C, Pratt D, Rosenthal SB, Riva L, Nguyen C, Beltran-Raygoza N, Soonthornvacharin S, Wang G, Jimenez-Morales D, De Jesus PD, Moulton HM, Stein DA, Chang MW, Benner C, Ideker T, Albrecht RA, Hultquist JF, Krogan NJ, García-Sastre A, Chanda SK. PMID: 34556855.
      View in: PubMed   Mentions:    Fields:    
    3. NDEx: Accessing Network Models and Streamlining Network Biology Workflows. Curr Protoc. 2021 Sep; 1(9):e258. Pillich RT, Chen J, Churas C, Liu S, Ono K, Otasek D, Pratt D. PMID: 34570431.
      View in: PubMed   Mentions: Translation:Humans
    4. Functional landscape of SARS-CoV-2 cellular restriction. Mol Cell. 2021 06 17; 81(12):2656-2668.e8. Martin-Sancho L, Lewinski MK, Pache L, Stoneham CA, Yin X, Becker ME, Pratt D, Churas C, Rosenthal SB, Liu S, Weston S, De Jesus PD, O'Neill AM, Gounder AP, Nguyen C, Pu Y, Curry HM, Oom AL, Miorin L, Rodriguez-Frandsen A, Zheng F, Wu C, Xiong Y, Urbanowski M, Shaw ML, Chang MW, Benner C, Hope TJ, Frieman MB, García-Sastre A, Ideker T, Hultquist JF, Guatelli J, Chanda SK. PMID: 33930332; PMCID: PMC8043580.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    5. HiDeF: identifying persistent structures in multiscale 'omics data. Genome Biol. 2021 01 07; 22(1):21. Zheng F, Zhang S, Churas C, Pratt D, Bahar I, Ideker T. PMID: 33413539; PMCID: PMC7789082.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    6. Multiscale community detection in Cytoscape. PLoS Comput Biol. 2020 10; 16(10):e1008239. Singhal A, Cao S, Churas C, Pratt D, Fortunato S, Zheng F, Ideker T. PMID: 33095781; PMCID: PMC7584444.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    7. Identifying persistent structures in multiscale 'omics data. bioRxiv. 2020 Oct 03. Zheng F, Zhang S, Churas C, Pratt D, Bahar I, Ideker T. PMID: 32587977; PMCID: PMC7310637.
      View in: PubMed   Mentions:
    8. Functional Landscape of SARS-CoV-2 Cellular Restriction. bioRxiv. 2020 Sep 30. Martin-Sancho L, Lewinski MK, Pache L, Stoneham CA, Yin X, Pratt D, Churas C, Rosenthal SB, Liu S, De Jesus PD, O'Neill AM, Gounder AP, Nguyen C, Pu Y, Oom AL, Miorin L, Rodriguez-Frandsen A, Urbanowski M, Shaw ML, Chang MW, Benner C, Frieman MB, García-Sastre A, Ideker T, Hultquist JF, Guatelli J, Chanda SK. PMID: 33024967; PMCID: PMC7536870.
      View in: PubMed   Mentions:
    9. Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking. Structure. 2019 08 06; 27(8):1326-1335.e4. Wagner JR, Churas CP, Liu S, Swift RV, Chiu M, Shao C, Feher VA, Burley SK, Gilson MK, Amaro RE. PMID: 31257108; PMCID: PMC6685748.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    10. CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation. Nat Methods. 2018 09; 15(9):677-680. Haberl MG, Churas C, Tindall L, Boassa D, Phan S, Bushong EA, Madany M, Akay R, Deerinck TJ, Peltier ST, Ellisman MH. PMID: 30171236; PMCID: PMC6548193.
      View in: PubMed   Mentions: 25     Fields:    
    11. Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections. Bioinformatics. 2017 Oct 01; 33(19):3145-3147. Churas C, Perez AJ, Hakozaki H, Wong W, Lee D, Peltier ST, Ellisman MH. PMID: 28957496; PMCID: PMC5870650.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    12. Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods. J Struct Biol. 2017 05; 198(2):103-115. Wan X, Katchalski T, Churas C, Ghosh S, Phan S, Lawrence A, Hao Y, Zhou Z, Chen R, Chen Y, Zhang F, Ellisman MH. PMID: 28392451; PMCID: PMC5773259.
      View in: PubMed   Mentions:    Fields:    
    13. High-resolution human genome structure by single-molecule analysis. Proc Natl Acad Sci U S A. 2010 Jun 15; 107(24):10848-53. Teague B, Waterman MS, Goldstein S, Potamousis K, Zhou S, Reslewic S, Sarkar D, Valouev A, Churas C, Kidd JM, Kohn S, Runnheim R, Lamers C, Forrest D, Newton MA, Eichler EE, Kent-First M, Surti U, Livny M, Schwartz DC. PMID: 20534489; PMCID: PMC2890719.
      View in: PubMed   Mentions: 82     Fields:    Translation:HumansCells
    14. A single molecule scaffold for the maize genome. PLoS Genet. 2009 Nov; 5(11):e1000711. Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, Livny M, Schwartz DC. PMID: 19936062; PMCID: PMC2774507.
      View in: PubMed   Mentions: 73     Fields:    Translation:AnimalsCells
    15. Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol. 2009 May 05; 7(5):e1000112. Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z, Marques AC, Graves T, Zhou S, Teague B, Potamousis K, Churas C, Place M, Herschleb J, Runnheim R, Forrest D, Amos-Landgraf J, Schwartz DC, Cheng Z, Lindblad-Toh K, Eichler EE, Ponting CP, Mouse Genome Sequencing Consortium. PMID: 19468303; PMCID: PMC2680341.
      View in: PubMed   Mentions: 230     Fields:    Translation:HumansAnimals
    16. Optical mapping discerns genome wide DNA methylation profiles. BMC Mol Biol. 2008 Jul 30; 9:68. Ananiev GE, Goldstein S, Runnheim R, Forrest DK, Zhou S, Potamousis K, Churas CP, Bergendahl V, Thomson JA, Schwartz DC. PMID: 18667073; PMCID: PMC2516518.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCells
    17. Validation of rice genome sequence by optical mapping. BMC Genomics. 2007 Aug 15; 8:278. Zhou S, Bechner MC, Place M, Churas CP, Pape L, Leong SA, Runnheim R, Forrest DK, Goldstein S, Livny M, Schwartz DC. PMID: 17697381; PMCID: PMC2048515.
      View in: PubMed   Mentions: 64     Fields:    Translation:AnimalsCells
    18. Whole-genome shotgun optical mapping of Rhodospirillum rubrum. Appl Environ Microbiol. 2005 Sep; 71(9):5511-22. Reslewic S, Zhou S, Place M, Zhang Y, Briska A, Goldstein S, Churas C, Runnheim R, Forrest D, Lim A, Lapidus A, Han CS, Roberts GP, Schwartz DC. PMID: 16151144; PMCID: PMC1214604.
      View in: PubMed   Mentions: 41     Fields:    Translation:Cells
    19. Single-molecule approach to bacterial genomic comparisons via optical mapping. J Bacteriol. 2004 Nov; 186(22):7773-82. Zhou S, Kile A, Bechner M, Place M, Kvikstad E, Deng W, Wei J, Severin J, Runnheim R, Churas C, Forrest D, Dimalanta ET, Lamers C, Burland V, Blattner FR, Schwartz DC. PMID: 15516592; PMCID: PMC524920.
      View in: PubMed   Mentions: 32     Fields:    Translation:Cells
    20. Shotgun optical mapping of the entire Leishmania major Friedlin genome. Mol Biochem Parasitol. 2004 Nov; 138(1):97-106. Zhou S, Kile A, Kvikstad E, Bechner M, Severin J, Forrest D, Runnheim R, Churas C, Anantharaman TS, Myler P, Vogt C, Ivens A, Stuart K, Schwartz DC. PMID: 15500921.
      View in: PubMed   Mentions: 26     Fields:    Translation:Animals
    21. A microfluidic system for large DNA molecule arrays. Anal Chem. 2004 Sep 15; 76(18):5293-301. Dimalanta ET, Lim A, Runnheim R, Lamers C, Churas C, Forrest DK, de Pablo JJ, Graham MD, Coppersmith SN, Goldstein S, Schwartz DC. PMID: 15362885.
      View in: PubMed   Mentions: 68     Fields:    Translation:Humans
    22. Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly. Genome Res. 2003 Sep; 13(9):2142-51. Zhou S, Kvikstad E, Kile A, Severin J, Forrest D, Runnheim R, Churas C, Hickman JW, Mackenzie C, Choudhary M, Donohue T, Kaplan S, Schwartz DC. PMID: 12952882; PMCID: PMC403714.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    23. A whole-genome shotgun optical map of Yersinia pestis strain KIM. Appl Environ Microbiol. 2002 Dec; 68(12):6321-31. Zhou S, Deng W, Anantharaman TS, Lim A, Dimalanta ET, Wang J, Wu T, Chunhong T, Creighton R, Kile A, Kvikstad E, Bechner M, Yen G, Garic-Stankovic A, Severin J, Forrest D, Runnheim R, Churas C, Lamers C, Perna NT, Burland V, Blattner FR, Mishra B, Schwartz DC. PMID: 12450857; PMCID: PMC134435.
      View in: PubMed   Mentions: 33     Fields:    Translation:Cells
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