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Charles Elkan

Title(s)Adjunct Professor, Computer Science and Engineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #0404
La Jolla CA 92093
Phone8/5-34--8897
Emailcelkan@ucsd.edu
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Optimal Thresholding of Classifiers to Maximize F1 Measure. Mach Learn Knowl Discov Databases. 2014; 8725:225-239. Lipton ZC, Elkan C, Naryanaswamy B. PMID: 26023687.
      View in: PubMed   Mentions:
    2. Differential privacy based on importance weighting. Mach Learn. 2013 Oct; 93(1):163-183. Ji Z, Elkan C. PMID: 24482559.
      View in: PubMed   Mentions:
    3. Inhibition in multiclass classification. Neural Comput. 2012 Sep; 24(9):2473-507. Huerta R, Vembu S, Amigó JM, Nowotny T, Elkan C. PMID: 22594829.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    4. Predicting accurate probabilities with a ranking loss. Proc Int Conf Mach Learn. 2012; 2012:703-710. Menon AK, Jiang XJ, Vembu S, Elkan C, Ohno-Machado L. PMID: 25285328.
      View in: PubMed   Mentions:
    5. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics. 2011 Oct 03; 12 Suppl 8:S3. Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. PMID: 22151929.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansAnimals
    6. Identifying relevant data for a biological database: handcrafted rules versus machine learning. IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun; 8(3):851-7. Sehgal AK, Das S, Noto K, Saier MH, Elkan C. PMID: 21393656.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    7. Learning gene regulatory networks from only positive and unlabeled data. BMC Bioinformatics. 2010 May 05; 11:228. Cerulo L, Elkan C, Ceccarelli M. PMID: 20444264.
      View in: PubMed   Mentions: 20     Fields:    
    8. The Transporter Classification Database: recent advances. Nucleic Acids Res. 2009 Jan; 37(Database issue):D274-8. Saier MH, Yen MR, Noto K, Tamang DG, Elkan C. PMID: 19022853.
      View in: PubMed   Mentions: 189     Fields:    
    9. A common ancestor for a subunit in the mitochondrial proton-translocating NADH:ubiquinone oxidoreductase (complex I) and short-chain dehydrogenases/reductases. Cell Mol Life Sci. 1999 Mar; 55(3):450-5. Baker ME, Grundy WN, Elkan CP. PMID: 10228558.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    10. Spinach CSP41, an mRNA-binding protein and ribonuclease, is homologous to nucleotide-sugar epimerases and hydroxysteroid dehydrogenases. Biochem Biophys Res Commun. 1998 Jul 20; 248(2):250-4. Baker ME, Grundy WN, Elkan CP. PMID: 9675122.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    11. Meta-MEME: motif-based hidden Markov models of protein families. Comput Appl Biosci. 1997 Aug; 13(4):397-406. Grundy WN, Bailey TL, Elkan CP, Baker ME. PMID: 9283754.
      View in: PubMed   Mentions: 50     Fields:    Translation:Cells
    12. An artificial intelligence approach to motif discovery in protein sequences: application to steriod dehydrogenases. J Steroid Biochem Mol Biol. 1997 May; 62(1):29-44. Bailey TL, Baker ME, Elkan CP. PMID: 9366496.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    13. Hidden Markov model analysis of motifs in steroid dehydrogenases and their homologs. Biochem Biophys Res Commun. 1997 Feb 24; 231(3):760-6. Grundy WN, Bailey TL, Elkan CP, Baker ME. PMID: 9070888.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    14. ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool. Comput Appl Biosci. 1996 Aug; 12(4):303-10. Grundy WN, Bailey TL, Elkan CP. PMID: 8902357.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
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