Charles Elkan

TitleAdjunct Professor
InstitutionUniversity of California San Diego
DepartmentComputer Science and Engineering
Address9500 Gilman Drive #0404
La Jolla CA 92093
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    1. Lipton ZC, Elkan C, Naryanaswamy B. Optimal Thresholding of Classifiers to Maximize F1 Measure. Mach Learn Knowl Discov Databases. 2014; 8725:225-239. PMID: 26023687.
      View in: PubMed
    2. Ji Z, Elkan C. Differential privacy based on importance weighting. Mach Learn. 2013 Oct; 93(1):163-183. PMID: 24482559.
      View in: PubMed
    3. Huerta R, Vembu S, Amigó JM, Nowotny T, Elkan C. Inhibition in multiclass classification. Neural Comput. 2012 Sep; 24(9):2473-507. PMID: 22594829; PMCID: PMC3717401.
    4. Menon AK, Jiang XJ, Vembu S, Elkan C, Ohno-Machado L. Predicting accurate probabilities with a ranking loss. Proc Int Conf Mach Learn. 2012; 2012:703-710. PMID: 25285328.
      View in: PubMed
    5. Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics. 2011 Oct 03; 12 Suppl 8:S3. PMID: 22151929; PMCID: PMC3269938.
    6. Sehgal AK, Das S, Noto K, Saier MH, Elkan C. Identifying relevant data for a biological database: handcrafted rules versus machine learning. IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun; 8(3):851-7. PMID: 21393656; PMCID: PMC3980937.
    7. Cerulo L, Elkan C, Ceccarelli M. Learning gene regulatory networks from only positive and unlabeled data. BMC Bioinformatics. 2010 May 05; 11:228. PMID: 20444264; PMCID: PMC2887423.
    8. Saier MH, Yen MR, Noto K, Tamang DG, Elkan C. The Transporter Classification Database: recent advances. Nucleic Acids Res. 2009 Jan; 37(Database issue):D274-8. PMID: 19022853; PMCID: PMC2686586.
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