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    Charles Elkan

    TitleAdjunct Professor
    SchoolUniversity of California, San Diego
    DepartmentComputer Science and Engineering
    Address9500 Gilman Drive #0404
    CA La Jolla 92093
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Lipton ZC, Elkan C, Naryanaswamy B. Optimal Thresholding of Classifiers to Maximize F1 Measure. Mach Learn Knowl Discov Databases. 2014; 8725:225-239. PMID: 26023687.
        View in: PubMed
      2. Ji Z, Elkan C. Differential privacy based on importance weighting. Mach Learn. 2013 Oct; 93(1):163-183. PMID: 24482559.
        View in: PubMed
      3. Huerta R, Vembu S, Amigó JM, Nowotny T, Elkan C. Inhibition in multiclass classification. Neural Comput. 2012 Sep; 24(9):2473-507. PMID: 22594829; PMCID: PMC3717401.
      4. Menon AK, Jiang XJ, Vembu S, Elkan C, Ohno-Machado L. Predicting accurate probabilities with a ranking loss. Proc Int Conf Mach Learn. 2012; 2012:703-710. PMID: 25285328.
        View in: PubMed
      5. Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics. 2011 Oct 03; 12 Suppl 8:S3. PMID: 22151929; PMCID: PMC3269938.
      6. Sehgal AK, Das S, Noto K, Saier MH, Elkan C. Identifying relevant data for a biological database: handcrafted rules versus machine learning. IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun; 8(3):851-7. PMID: 21393656; PMCID: PMC3980937.
      7. Cerulo L, Elkan C, Ceccarelli M. Learning gene regulatory networks from only positive and unlabeled data. BMC Bioinformatics. 2010 May 05; 11:228. PMID: 20444264; PMCID: PMC2887423.
      8. Saier MH, Yen MR, Noto K, Tamang DG, Elkan C. The Transporter Classification Database: recent advances. Nucleic Acids Res. 2009 Jan; 37(Database issue):D274-8. PMID: 19022853; PMCID: PMC2686586.
      9. Baker ME, Grundy WN, Elkan C. A common ancestor for a subunit in the mitochondrial proton-translocating NADH:ubiquinone oxidoreductase (complex I) and short-chain dehydrogenases/reductases. Cell Mol Life Sci. 1999 Mar; 55(3):450-5. PMID: 10228558.
        View in: PubMed
      10. Baker ME, Grundy WN, Elkan C. Spinach CSP41, an mRNA-binding protein and ribonuclease, is homologous to nucleotide-sugar epimerases and hydroxysteroid dehydrogenases. Biochem Biophys Res Commun. 1998 Jul 20; 248(2):250-4. PMID: 9675122.
        View in: PubMed
      11. Grundy WN, Bailey TL, Elkan C, Baker ME. Meta-MEME: motif-based hidden Markov models of protein families. Comput Appl Biosci. 1997 Aug; 13(4):397-406. PMID: 9283754.
        View in: PubMed
      12. Bailey TL, Baker ME, Elkan C. An artificial intelligence approach to motif discovery in protein sequences: application to steriod dehydrogenases. J Steroid Biochem Mol Biol. 1997 May; 62(1):29-44. PMID: 9366496.
        View in: PubMed
      13. Grundy WN, Bailey TL, Elkan C, Baker ME. Hidden Markov model analysis of motifs in steroid dehydrogenases and their homologs. Biochem Biophys Res Commun. 1997 Feb 24; 231(3):760-6. PMID: 9070888.
        View in: PubMed
      14. Grundy WN, Bailey TL, Elkan C. ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool. Comput Appl Biosci. 1996 Aug; 12(4):303-10. PMID: 8902357.
        View in: PubMed
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