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    Chao Chen

    TitlePostdoctoral Scholar
    SchoolUniversity of California, San Diego
    DepartmentMedicine
    Address9500 Gilman Drive #0613
    CA La Jolla 92093
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Denis V, Ribas-Deulofeu L, Sturaro N, Kuo CY, Chen C. A functional approach to the structural complexity of coral assemblages based on colony morphological features. Sci Rep. 2017 Aug 29; 7(1):9849. PMID: 28852107.
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      2. Yang SH, Tseng CH, Huang CR, Chen CP, Tandon K, Lee STM, Chiang PW, Shiu JH, Chen C, Tang SL. Long-Term Survey Is Necessary to Reveal Various Shifts of Microbial Composition in Corals. Front Microbiol. 2017; 8:1094. PMID: 28659905.
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      3. Lin MF, Moya A, Ying H, Chen C, Cooke I, Ball EE, Forêt S, Miller DJ. Analyses of corallimorpharian transcriptomes provide new perspectives on the evolution of calcification in the Scleractinia (corals). Genome Biol Evol. 2017 Jan 31. PMID: 28158437.
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      4. Keshavmurthy S, Tang KH, Hsu CM, Gan CH, Kuo CY, Soong K, Chou HN, Chen C. Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan, in the South China Sea. PeerJ. 2017; 5:e2871. PMID: 28133566.
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      5. Hsiao ST, Chuang SC, Chen KS, Ho PH, Wu CL, Chen C. DNA barcoding reveals that the common cupped oyster in Taiwan is the Portuguese oyster Crassostrea angulata (Ostreoida; Ostreidae), not C. gigas. Sci Rep. 2016 Sep 26; 6:34057. PMID: 27666088.
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      6. Arrigoni R, Berumen ML, Chen C, Terraneo TI, Baird AH, Payri C, Benzoni F. Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species. Mol Phylogenet Evol. 2016 Dec; 105:146-59. PMID: 27593164.
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      7. Chen WM, Liu LP, Chen C, Wang JT, Sheu SY. Thalassotalea montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata. Int J Syst Evol Microbiol. 2016 Oct; 66(10):4077-4084. PMID: 27431997.
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      8. Wang JT, Hsu CM, Kuo CY, Meng PJ, Kao SJ, Chen C. Physiological Outperformance at the Morphologically-Transformed Edge of the Cyanobacteriosponge Terpios hoshinota (Suberitidae: Hadromerida) when Confronting Opponent Corals. PLoS One. 2015; 10(6):e0131509. PMID: 26110525.
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      9. Chuang Y, Chen C. The complete mitochondrial genomes of Pseudosiderastrea spp (Cnidaria, Scleractinia, Siderastreidae). Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov; 27(6):4065-4066. PMID: 25629500.
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      10. Hsu CM, de Palmas S, Kuo CY, Denis V, Chen C. Identification of scleractinian coral recruits using fluorescent censusing and DNA barcoding techniques. PLoS One. 2014; 9(9):e107366. PMID: 25211345.
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      11. Keshavmurthy S, Fontana S, Mezaki T, González Ldel C, Chen C. Doors are closing on early development in corals facing climate change. Sci Rep. 2014; 4:5633. PMID: 25005591.
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      12. Lin MF, Kitahara MV, Luo H, Tracey D, Geller J, Fukami H, Miller DJ, Chen C. Mitochondrial genome rearrangements in the scleractinia/corallimorpharia complex: implications for coral phylogeny. Genome Biol Evol. 2014 May; 6(5):1086-95. PMID: 24769753.
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      13. Kitahara MV, Lin MF, Forêt S, Huttley G, Miller DJ, Chen C. The "naked coral" hypothesis revisited - evidence for and against scleractinian monophyly. PLoS One. 2014; 9(4):e94774. PMID: 24740380.
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      14. Keshavmurthy S, Meng PJ, Wang JT, Kuo CY, Yang SY, Hsu CM, Gan CH, Dai CF, Chen C. Can resistant coral-Symbiodinium associations enable coral communities to survive climate change? A study of a site exposed to long-term hot water input. PeerJ. 2014; 2:e327. PMID: 24765567.
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      15. Liu SY, Chan CL, Lin O, Hu CS, Chen C. DNA Barcoding of Shark Meats Identify Species Composition and CITES-Listed Species from the Markets in Taiwan. PLoS One. 2013; 8(11):e79373. PMID: 24260209.
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      16. Woo S, Lee A, Denis V, Chen C, Yum S. Transcript response of soft coral (Scleronephthya gracillimum) on exposure to polycyclic aromatic hydrocarbons. Environ Sci Pollut Res Int. 2014 Jan; 21(2):901-10. PMID: 23832774.
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      17. Wen CK, Chen KS, Hsieh HJ, Hsu CM, Chen C. High coral cover and subsequent high fish richness on mature breakwaters in Taiwan. Mar Pollut Bull. 2013 Jul 15; 72(1):55-63. PMID: 23711840.
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      18. Feary DA, Burt JA, Bauman AG, Al Hazeem S, Abdel-Moati MA, Al-Khalifa KA, Anderson DM, Amos C, Baker A, Bartholomew A, Bento R, Cavalcante GH, Chen C, Coles SL, Dab K, Fowler AM, George D, Grandcourt E, Hill R, John DM, Jones DA, Keshavmurthy S, Mahmoud H, Moradi Och Tapeh M, Mostafavi PG, Naser H, Pichon M, Purkis S, Riegl B, Samimi-Namin K, Sheppard C, Vajed Samiei J, Voolstra CR, Wiedenmann J. Critical research needs for identifying future changes in Gulf coral reef ecosystems. Mar Pollut Bull. 2013 Jul 30; 72(2):406-16. PMID: 23643407.
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      19. Denis V, Mezaki T, Tanaka K, Kuo CY, De Palmas S, Keshavmurthy S, Chen C. Coverage, diversity, and functionality of a high-latitude coral community (Tatsukushi, Shikoku Island, Japan). PLoS One. 2013; 8(1):e54330. PMID: 23342135.
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      20. Keshavmurthy S, Yang SY, Alamaru A, Chuang YY, Pichon M, Obura D, Fontana S, De Palmas S, Stefani F, Benzoni F, MacDonald A, Noreen AM, Chen C, Wallace CC, Pillay RM, Denis V, Amri AY, Reimer JD, Mezaki T, Sheppard C, Loya Y, Abelson A, Mohammed MS, Baker AC, Mostafavi PG, Suharsono BA, Chen C. DNA barcoding reveals the coral "laboratory-rat", Stylophora pistillata encompasses multiple identities. Sci Rep. 2013; 3:1520. PMID: 23519209.
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      21. Fontana S, Keshavmurthy S, Hsieh HJ, Denis V, Kuo CY, Hsu CM, Leung JK, Tsai WS, Wallace CC, Chen C. Molecular evidence shows low species diversity of coral-associated hydroids in Acropora corals. PLoS One. 2012; 7(11):e50130. PMID: 23209655.
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      22. Wang JT, Chen YY, Tew KS, Meng PJ, Chen C. Physiological and biochemical performances of menthol-induced aposymbiotic corals. PLoS One. 2012; 7(9):e46406. PMID: 23029512.
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      23. Kuo CY, Yuen YS, Meng PJ, Ho PH, Wang JT, Liu PJ, Chang YC, Dai CF, Fan TY, Lin HJ, Baird AH, Chen C. Recurrent disturbances and the degradation of hard coral communities in Taiwan. PLoS One. 2012; 7(8):e44364. PMID: 22952967.
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      24. Keshavmurthy S, Hsu CM, Kuo CY, Meng PJ, Wang JT, Chen C. Symbiont communities and host genetic structure of the brain coral Platygyra verweyi, at the outlet of a nuclear power plant and adjacent areas. Mol Ecol. 2012 Sep; 21(17):4393-407. PMID: 22809041.
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      25. Lin MF, Kitahara MV, Tachikawa H, Fukami H, Miller DJ, Chen C. Novel organization of the mitochondrial genome in the deep-sea coral, Madrepora oculata (Hexacorallia, Scleractinia, Oculinidae) and its taxonomic implications. Mol Phylogenet Evol. 2012 Oct; 65(1):323-8. PMID: 22760028.
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      26. Chen MH, Sheu SY, Chen C, Wang JT, Chen WM. Corallomonas stylophorae gen. nov., sp. nov., a halophilic bacterium isolated from the reef-building coral Stylophora pistillata. Int J Syst Evol Microbiol. 2013 Mar; 63(Pt 3):982-8. PMID: 22685102.
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      27. Yang SY, Keshavmurthy S, Obura D, Sheppard CR, Visram S, Chen C. Diversity and distribution of symbiodinium associated with seven common coral species in the Chagos Archipelago, central Indian Ocean. PLoS One. 2012; 7(5):e35836. PMID: 22567113.
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      28. Huang YC, Huang SC, Meng PJ, Hsieh HJ, Chen C. Influence of strong monsoon winds on the water quality around a marine cage-culture zone in a shallow and semi-enclosed bay in Taiwan. Mar Pollut Bull. 2012 Apr; 64(4):851-60. PMID: 22306313.
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      29. Chen MH, Sheu SY, Chen C, Wang JT, Chen WM. Oceanicaulis stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata. Int J Syst Evol Microbiol. 2012 Sep; 62(Pt 9):2241-6. PMID: 22081721.
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      30. Chen MH, Sheu SY, Chen C, Wang JT, Chen WM. Idiomarina aquimaris sp. nov., isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol. 2012 Jul; 62(Pt 7):1536-42. PMID: 21856977.
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      31. Chen MH, Sheu SY, Chen C, Wang JT, Chen WM. Roseivivax isoporae sp. nov., isolated from a reef-building coral, and emended description of the genus Roseivivax. Int J Syst Evol Microbiol. 2012 Jun; 62(Pt 6):1259-64. PMID: 21764981.
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      32. Tang SL, Hong MJ, Liao MH, Jane WN, Chiang PW, Chen CB, Chen C. Bacteria associated with an encrusting sponge (Terpios hoshinota) and the corals partially covered by the sponge. Environ Microbiol. 2011 May; 13(5):1179-91. PMID: 21265978.
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      33. Chen CP, Tseng CH, Chen C, Tang SL. The dynamics of microbial partnerships in the coral Isopora palifera. ISME J. 2011 Apr; 5(4):728-40. PMID: 20962876.
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      34. Sheu SY, Jiang SR, Chen C, Wang JT, Chen WM. Paracoccus stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata. Int J Syst Evol Microbiol. 2011 Sep; 61(Pt 9):2221-6. PMID: 20935084.
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      35. Sheu SY, Jiang SR, Chen C, Wang JT, Chen WM. Vibrio stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata. Int J Syst Evol Microbiol. 2011 Sep; 61(Pt 9):2180-5. PMID: 20935089.
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      36. Chen MH, Sheu SY, Arun AB, Young CC, Chen C, Wang JT, Chen WM. Pseudoteredinibacter isoporae gen. nov., sp. nov., a marine bacterium isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol. 2011 Aug; 61(Pt 8):1887-93. PMID: 20833889.
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      37. Chen MH, Sheu SY, Chen C, Wang JT, Chen WM. Paracoccus isoporae sp. nov., isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol. 2011 May; 61(Pt 5):1138-43. PMID: 20543151.
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      38. Chen MH, Sheu SY, Chen C, Wang JT, Chen WM. Shimia isoporae sp. nov., isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol. 2011 Apr; 61(Pt 4):823-7. PMID: 20453104.
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      39. Hong MJ, Yu YT, Chen C, Chiang PW, Tang SL. Influence of species specificity and other factors on bacteria associated with the coral Stylophora pistillata in Taiwan. Appl Environ Microbiol. 2009 Dec; 75(24):7797-806. PMID: 19854921.
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      40. Yang CS, Chen MH, Arun AB, Chen C, Wang JT, Chen WM. Endozoicomonas montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata. Int J Syst Evol Microbiol. 2010 May; 60(Pt 5):1158-62. PMID: 19666790.
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      41. Chou JH, Chou YJ, Arun AB, Young CC, Chen C, Wang JT, Chen WM. Vogesella lacus sp. nov., isolated from a soft-shell turtle culture pond. Int J Syst Evol Microbiol. 2009 Oct; 59(Pt 10):2629-32. PMID: 19625439.
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      42. Sheu SY, Chiu TF, Chou JH, Sheu DS, Arun AB, Young CC, Chen C, Wang JT, Chen WM. Andreprevotia lacus sp. nov., isolated from a fish-culture pond. Int J Syst Evol Microbiol. 2009 Oct; 59(Pt 10):2482-5. PMID: 19622669.
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      43. Sheu SY, Chiu TF, Cho NT, Chou JH, Sheu DS, Arun AB, Young CC, Chen C, Wang JT, Chen WM. Flectobacillus roseus sp. nov., isolated from freshwater in Taiwan. Int J Syst Evol Microbiol. 2009 Oct; 59(Pt 10):2546-51. PMID: 19622645.
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      44. Fukami H, Chen CA, Budd AF, Collins A, Wallace C, Chuang YY, Chen C, Dai CF, Iwao K, Sheppard C, Knowlton N. Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria). PLoS One. 2008; 3(9):e3222. PMID: 18795098.
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      45. Gan CH, Tee SM, Tang PC, Yang JM, Freire F, McGowan A, Narriman J, Mohammed MS, Hsieh HL, Chen CP, Sheppard C, Chen C. Isolation and characteristics of 10 microsatellite markers from the endangered coconut crab (Birgus latro). Mol Ecol Resour. 2008 Nov; 8(6):1448-50. PMID: 21586072.
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      46. Chen IP, Tang CY, Chiou CY, Hsu JH, Wei NV, Wallace CC, Muir P, Wu H, Chen C. Comparative analyses of coding and noncoding DNA regions indicate that Acropora (Anthozoa: Scleractina) possesses a similar evolutionary tempo of nuclear vs. mitochondrial genomes as in plants. Mar Biotechnol (NY). 2009 Jan-Feb; 11(1):141-52. PMID: 18670809.
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      47. Chen C, Chiou CY, Dai CF, Chen C. Unique mitogenomic features in the scleractinian family pocilloporidae (scleractinia: astrocoeniina). Mar Biotechnol (NY). 2008 Sep-Oct; 10(5):538-53. PMID: 18478295.
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      48. Wang JT, Chou YJ, Chou JH, Chen C, Chen WM. Tenacibaculum aiptasiae sp. nov., isolated from a sea anemone Aiptasia pulchella. Int J Syst Evol Microbiol. 2008 Apr; 58(Pt 4):761-6. PMID: 18398166.
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      49. Chiou CY, Chen IP, Chen C, Wu HJ, Wei NV, Wallace CC, Chen C. Analysis of Acropora muricata calmodulin (CaM) indicates that scleractinian corals possess the ancestral exon/intron organization of the eumetazoan CaM gene. J Mol Evol. 2008 Apr; 66(4):317-24. PMID: 18322634.
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      50. Chen C, Dai CF, Plathong S, Chiou CY, Chen C. The complete mitochondrial genomes of needle corals, Seriatopora spp. (Scleractinia: Pocilloporidae): an idiosyncratic atp8, duplicated trnW gene, and hypervariable regions used to determine species phylogenies and recently diverged populations. Mol Phylogenet Evol. 2008 Jan; 46(1):19-33. PMID: 18042404.
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      51. Fukami H, Chen C, Chiou CY, Knowlton N. Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of Scleractinian corals. J Mol Evol. 2007 May; 64(5):591-600. PMID: 17437148.
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      52. Yang MC, Chen CA, Hsieh HL, Chen C. Population subdivision of the tri-spine horseshoe crab, Tachypleus tridentatus, in Taiwan Strait. Zoolog Sci. 2007 Mar; 24(3):219-24. PMID: 17551241.
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      53. Hung YT, Chen C, Wu WJ, Lin CC, Shih CJ. Phylogenetic utility of the ribosomal internal transcribed spacer 2 in Strumigenys spp. (Hymenoptera: Formicidae). Mol Phylogenet Evol. 2004 Jul; 32(1):407-15. PMID: 15186825.
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      54. Chen C, Ablan MC, McManus JW, Bell JD, Tuan VS, Cabanban AS, Shao KT. Population structure and genetic variability of six bar wrasse (Thallasoma hardwicki) in Northern South China Sea revealed by mitochondrial control region sequences. Mar Biotechnol (NY). 2004 Jul-Aug; 6(4):312-26. PMID: 15129326.
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      55. Hwang SP, Wu JY, Chen CA, Hui CF, Chen C. Novel pattern of AtXlox gene expression in starfish Archaster typicus embryos. Dev Growth Differ. 2003 Feb; 45(1):85-93. PMID: 12630949.
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      56. Chen C, Wallace CC, Wolstenholme J. Analysis of the mitochondrial 12S rRNA gene supports a two-clade hypothesis of the evolutionary history of scleractinian corals. Mol Phylogenet Evol. 2002 May; 23(2):137-49. PMID: 12069546.
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      57. Lin SM, Chen C, Lue KY. Molecular phylogeny and biogeography of the grass lizards genus Takydromus (Reptilia: Lacertidae) of East Asia. Mol Phylogenet Evol. 2002 Feb; 22(2):276-88. PMID: 11820848.
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      58. Chen CA, Chen C, Fan TY, Yu JK, Hsieh HL. Nucleotide sequences of ribosomal internal transcribed spacers and their utility in distinguishing closely related Perinereis polychaets (Annelida; Polychaeta; Nereididae). Mar Biotechnol (NY). 2002 Jan; 4(1):17-29. PMID: 14961285.
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