Barry Grant

InstitutionUniversity of California San Diego
DepartmentMolecular Biology
Address9500 Gilman Drive #0355
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Muretta JM, Reddy BJN, Scarabelli G, Thompson AF, Jariwala S, Major J, Venere M, Rich JN, Willard B, Thomas DD, Stumpff J, Grant BJ, Gross SP, Rosenfeld SS. A posttranslational modification of the mitotic kinesin Eg5 that enhances its mechanochemical coupling and alters its mitotic function. Proc Natl Acad Sci U S A. 2018 02 20; 115(8):E1779-E1788. PMID: 29432173.
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    2. Yue Y, Blasius TL, Zhang S, Jariwala S, Walker B, Grant BJ, Cochran JC, Verhey KJ. Altered chemomechanical coupling causes impaired motility of the kinesin-4 motors KIF27 and KIF7. J Cell Biol. 2018 Apr 02; 217(4):1319-1334. PMID: 29351996.
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    3. Atherton J, Jiang K, Stangier MM, Luo Y, Hua S, Houben K, van Hooff JJE, Joseph AP, Scarabelli G, Grant BJ, Roberts AJ, Topf M, Steinmetz MO, Baldus M, Moores CA, Akhmanova A. A structural model for microtubule minus-end recognition and protection by CAMSAP proteins. Nat Struct Mol Biol. 2017 Nov; 24(11):931-943. PMID: 28991265.
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    4. Yao XQ, Cato MC, Labudde E, Beyett TS, Tesmer JJG, Grant BJ. Navigating the conformational landscape of G protein-coupled receptor kinases during allosteric activation. J Biol Chem. 2017 09 29; 292(39):16032-16043. PMID: 28808053.
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    5. Jariwala S, Skjærven L, Yao XQ, Grant BJ. Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web. J Vis Exp. 2017 07 16; (125). PMID: 28745621.
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    6. Stender JD, Nwachukwu JC, Kastrati I, Kim Y, Strid T, Yakir M, Srinivasan S, Nowak J, Izard T, Rangarajan ES, Carlson KE, Katzenellenbogen JA, Yao XQ, Grant BJ, Leong HS, Lin CY, Frasor J, Nettles KW, Glass CK. Structural and Molecular Mechanisms of Cytokine-Mediated Endocrine Resistance in Human Breast Cancer Cells. Mol Cell. 2017 Mar 16; 65(6):1122-1135.e5. PMID: 28306507.
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    7. Prakash P, Sayyed-Ahmad A, Cho KJ, Dolino DM, Chen W, Li H, Grant BJ, Hancock JF, Gorfe AA. Computational and biochemical characterization of two partially overlapping interfaces and multiple weak-affinity K-Ras dimers. Sci Rep. 2017 Jan 09; 7:40109. PMID: 28067274.
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    8. Nwachukwu JC, Srinivasan S, Bruno NE, Nowak J, Wright NJ, Minutolo F, Rangarajan ES, Izard T, Yao XQ, Grant BJ, Kojetin DJ, Elemento O, Katzenellenbogen JA, Nettles KW. Systems Structural Biology Analysis of Ligand Effects on ERa Predicts Cellular Response to Environmental Estrogens and Anti-hormone Therapies. Cell Chem Biol. 2017 Jan 19; 24(1):35-45. PMID: 28042045.
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    9. Skjærven L, Jariwala S, Yao XQ, Grant BJ. Online interactive analysis of protein structure ensembles with Bio3D-web. Bioinformatics. 2016 11 15; 32(22):3510-3512. PMID: 27423893.
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    10. Yao XQ, Skjærven L, Grant BJ. Rapid Characterization of Allosteric Networks with Ensemble Normal Mode Analysis. J Phys Chem B. 2016 08 25; 120(33):8276-88. PMID: 27056373.
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    11. Yao XQ, Malik RU, Griggs NW, Skjærven L, Traynor JR, Sivaramakrishnan S, Grant BJ. Dynamic Coupling and Allosteric Networks in the a Subunit of Heterotrimeric G Proteins. J Biol Chem. 2016 Feb 26; 291(9):4742-53. PMID: 26703464; PMCID: PMC4813496 [Available on 02/26/17].
    12. Scarabelli G, Soppina V, Yao XQ, Atherton J, Moores CA, Verhey KJ, Grant BJ. Mapping the Processivity Determinants of the Kinesin-3 Motor Domain. Biophys J. 2015 Oct 20; 109(8):1537-40. PMID: 26488644; PMCID: PMC4624112.
    13. Kalenkiewicz A, Grant BJ, Yang CY. Enrichment of druggable conformations from apo protein structures using cosolvent-accelerated molecular dynamics. Biology (Basel). 2015 Apr 21; 4(2):344-66. PMID: 25906084; PMCID: PMC4498304.
    14. Skjærven L, Yao XQ, Scarabelli G, Grant BJ. Integrating protein structural dynamics and evolutionary analysis with Bio3D. BMC Bioinformatics. 2014 Dec 10; 15:399. PMID: 25491031; PMCID: PMC4279791.
    15. Scarabelli G, Grant BJ. Kinesin-5 allosteric inhibitors uncouple the dynamics of nucleotide, microtubule, and neck-linker binding sites. Biophys J. 2014 Nov 04; 107(9):2204-13. PMID: 25418105; PMCID: PMC4223232.
    16. Scarabelli G, Grant BJ. Mapping the structural and dynamical features of kinesin motor domains. PLoS Comput Biol. 2013; 9(11):e1003329. PMID: 24244137; PMCID: PMC3820509.
    17. Yao XQ, Grant BJ. Domain-opening and dynamic coupling in the a-subunit of heterotrimeric G proteins. Biophys J. 2013 Jul 16; 105(2):L08-10. PMID: 23870276; PMCID: PMC3714883.
    18. Kekenes-Huskey PM, Metzger VT, Grant BJ, Andrew McCammon J. Calcium binding and allosteric signaling mechanisms for the sarcoplasmic reticulum Ca²+ ATPase. Protein Sci. 2012 Oct; 21(10):1429-43. PMID: 22821874; PMCID: PMC3526986.
    19. Ortiz-Sanchez JM, Nichols SE, Sayyah J, Brown JH, McCammon JA, Grant BJ. Identification of potential small molecule binding pockets on Rho family GTPases. PLoS One. 2012; 7(7):e40809. PMID: 22815826; PMCID: PMC3397943.
    20. Thomas JR, Gedeon PC, Grant BJ, Madura JD. LeuT conformational sampling utilizing accelerated molecular dynamics and principal component analysis. Biophys J. 2012 Jul 03; 103(1):L1-3. PMID: 22828348; PMCID: PMC3388204.
    21. Ostrov DA, Grant BJ, Pompeu YA, Sidney J, Harndahl M, Southwood S, Oseroff C, Lu S, Jakoncic J, de Oliveira CA, Yang L, Mei H, Shi L, Shabanowitz J, English AM, Wriston A, Lucas A, Phillips E, Mallal S, Grey HM, Sette A, Hunt DF, Buus S, Peters B. Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire. Proc Natl Acad Sci U S A. 2012 Jun 19; 109(25):9959-64. PMID: 22645359; PMCID: PMC3382472.
    22. Grant BJ, Gheorghe DM, Zheng W, Alonso M, Huber G, Dlugosz M, McCammon JA, Cross RA. Electrostatically biased binding of kinesin to microtubules. PLoS Biol. 2011 Nov; 9(11):e1001207. PMID: 22140358; PMCID: PMC3226556.
    23. Bucher D, Grant BJ, McCammon JA. Induced fit or conformational selection? The role of the semi-closed state in the maltose binding protein. Biochemistry. 2011 Dec 06; 50(48):10530-9. PMID: 22050600; PMCID: PMC3226325.
    24. Grant BJ, Lukman S, Hocker HJ, Sayyah J, Brown JH, McCammon JA, Gorfe AA. Novel allosteric sites on Ras for lead generation. PLoS One. 2011; 6(10):e25711. PMID: 22046245; PMCID: PMC3201956.
    25. de Oliveira CA, Grant BJ, Zhou M, McCammon JA. Large-scale conformational changes of Trypanosoma cruzi proline racemase predicted by accelerated molecular dynamics simulation. PLoS Comput Biol. 2011 Oct; 7(10):e1002178. PMID: 22022240; PMCID: PMC3192803.
    26. Bucher D, Grant BJ, Markwick PR, McCammon JA. Accessing a hidden conformation of the maltose binding protein using accelerated molecular dynamics. PLoS Comput Biol. 2011 Apr; 7(4):e1002034. PMID: 21533070; PMCID: PMC3080849.
    27. Skjaerven L, Grant B, Muga A, Teigen K, McCammon JA, Reuter N, Martinez A. Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations. PLoS Comput Biol. 2011 Mar; 7(3):e1002004. PMID: 21423709; PMCID: PMC3053311.
    28. Grant BJ, McCammon JA, Gorfe AA. Conformational selection in G-proteins: lessons from Ras and Rho. Biophys J. 2010 Dec 01; 99(11):L87-9. PMID: 21112273; PMCID: PMC2998626.
    29. Lukman S, Grant BJ, Gorfe AA, Grant GH, McCammon JA. The distinct conformational dynamics of K-Ras and H-Ras A59G. PLoS Comput Biol. 2010 Sep 09; 6(9). PMID: 20838576; PMCID: PMC2936511.
    30. Grant BJ, Gorfe AA, McCammon JA. Large conformational changes in proteins: signaling and other functions. Curr Opin Struct Biol. 2010 Apr; 20(2):142-7. PMID: 20060708; PMCID: PMC2866511.
    31. Khavrutskii IV, Grant B, Taylor SS, McCammon JA. A transition path ensemble study reveals a linchpin role for Mg(2+) during rate-limiting ADP release from protein kinase A. Biochemistry. 2009 Dec 08; 48(48):11532-45. PMID: 19886670; PMCID: PMC2789581.
    32. Gallo MT, Grant BJ, Teodoro ML, Melton J, Cieplak P, Phillips GN, Stec B. Novel procedure for thermal equilibration in molecular dynamics simulation. Mol Simul. 2009 Apr 01; 35(5):349-357. PMID: 25125797.
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    33. Grant BJ, Gorfe AA, McCammon JA. Ras conformational switching: simulating nucleotide-dependent conformational transitions with accelerated molecular dynamics. PLoS Comput Biol. 2009 Mar; 5(3):e1000325. PMID: 19300489; PMCID: PMC2651530.
    34. Gorfe AA, Grant BJ, McCammon JA. Mapping the nucleotide and isoform-dependent structural and dynamical features of Ras proteins. Structure. 2008 Jun; 16(6):885-96. PMID: 18547521; PMCID: PMC2519881.
    35. Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22; 8 Suppl 4:S1-4. PMID: 17570143; PMCID: PMC1892079.
    36. Grant BJ, McCammon JA, Caves LS, Cross RA. Multivariate analysis of conserved sequence-structure relationships in kinesins: coupling of the active site and a tubulin-binding sub-domain. J Mol Biol. 2007 May 18; 368(5):1231-48. PMID: 17399740.
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    37. Grant BJ, Rodrigues AP, ElSawy KM, McCammon JA, Caves LS. Bio3d: an R package for the comparative analysis of protein structures. Bioinformatics. 2006 Nov 01; 22(21):2695-6. PMID: 16940322.
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    38. Cheng X, Wang H, Grant B, Sine SM, McCammon JA. Targeted molecular dynamics study of C-loop closure and channel gating in nicotinic receptors. PLoS Comput Biol. 2006 Sep 29; 2(9):e134. PMID: 17009865; PMCID: PMC1584325.
    39. Rodrigues AP, Grant BJ, Hubbard RE. sgTarget: a target selection resource for structural genomics. Nucleic Acids Res. 2006 Jul 01; 34(Web Server issue):W225-30. PMID: 16844998; PMCID: PMC1538879.
    40. Cheng X, Lu B, Grant B, Law RJ, McCammon JA. Channel opening motion of alpha7 nicotinic acetylcholine receptor as suggested by normal mode analysis. J Mol Biol. 2006 Jan 13; 355(2):310-24. PMID: 16307758.
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