Anton Bankevich

Title(s)Postdoctoral Scholar, Computer Science and Engineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads. Nat Biotechnol. 2022 Jul; 40(7):1075-1081. Bankevich A, Bzikadze AV, Kolmogorov M, Antipov D, Pevzner PA. PMID: 35228706.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    2. ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs. Microbiome. 2021 06 28; 9(1):149. Dvorkina T, Bankevich A, Sorokin A, Yang F, Adu-Oppong B, Williams R, Turner K, Pevzner PA. PMID: 34183047; PMCID: PMC8240309.
      View in: PubMed   Mentions: 1     Fields:    
    3. Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads. Genome Biol. 2019 10 31; 20(1):226. Sanders JG, Nurk S, Salido RA, Minich J, Xu ZZ, Zhu Q, Martino C, Fedarko M, Arthur TD, Chen F, Boland BS, Humphrey GC, Brennan C, Sanders K, Gaffney J, Jepsen K, Khosroheidari M, Green C, Liyanage M, Dang JW, Phelan VV, Quinn RA, Bankevich A, Chang JT, Rana TM, Conrad DJ, Sandborn WJ, Smarr L, Dorrestein PC, Pevzner PA, Knight R. PMID: 31672156; PMCID: PMC6822431.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    4. cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs. Bioinformatics. 2019 07 15; 35(14):i61-i70. Tolstoganov I, Bankevich A, Chen Z, Pevzner PA. PMID: 31510642; PMCID: PMC6612831.
      View in: PubMed   Mentions: 5     Fields:    
    5. Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity. Cell Syst. 2018 08 22; 7(2):192-200.e3. Bankevich A, Pevzner PA. PMID: 30056005.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    6. Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly. Genome Biol. 2016 10 11; 17(1):211. Kim S, Cho YS, Kim HM, Chung O, Kim H, Jho S, Seomun H, Kim J, Bang WY, Kim C, An J, Bae CH, Bhak Y, Jeon S, Yoon H, Kim Y, Jun J, Lee H, Cho S, Uphyrkina O, Kostyria A, Goodrich J, Miquelle D, Roelke M, Lewis J, Yurchenko A, Bankevich A, Cho J, Lee S, Edwards JS, Weber JA, Cook J, Kim S, Lee H, Manica A, Lee I, O'Brien SJ, Bhak J, Yeo JH. PMID: 27802837; PMCID: PMC5090899.
      View in: PubMed   Mentions: 35     Fields:    Translation:Animals
    7. TruSPAdes: barcode assembly of TruSeq synthetic long reads. Nat Methods. 2016 Mar; 13(3):248-50. Bankevich A, Pevzner PA. PMID: 26828418.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    8. dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. J Comput Biol. 2015 Jun; 22(6):528-45. Safonova Y, Bankevich A, Pevzner PA. PMID: 25734602; PMCID: PMC4449708.
      View in: PubMed   Mentions: 30     Fields:    
    9. ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinformatics. 2014 Jun 15; 30(12):i293-301. Prjibelski AD, Vasilinetc I, Bankevich A, Gurevich A, Krivosheeva T, Nurk S, Pham S, Korobeynikov A, Lapidus A, Pevzner PA. PMID: 24931996; PMCID: PMC4058921.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansCells
    10. Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. J Comput Biol. 2013 Oct; 20(10):714-37. Nurk S, Bankevich A, Antipov D, Gurevich AA, Korobeynikov A, Lapidus A, Prjibelski AD, Pyshkin A, Sirotkin A, Sirotkin Y, Stepanauskas R, Clingenpeel SR, Woyke T, McLean JS, Lasken R, Tesler G, Alekseyev MA, Pevzner PA. PMID: 24093227; PMCID: PMC3791033.
      View in: PubMed   Mentions: 683     Fields:    Translation:Cells
    11. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012 May; 19(5):455-77. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. PMID: 22506599; PMCID: PMC3342519.
      View in: PubMed   Mentions: 8853     Fields:    Translation:Cells
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