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Alexander Aksenov

TitleProject Scientist
InstitutionUniversity of California San Diego
DepartmentSchool of Pharmacy and Pharmaceutical Science
Address9500 Gilman Drive #0719
La Jolla CA 92093
Phone858-822-5437
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Shalapour S, Lin XJ, Bastian IN, Brain J, Burt AD, Aksenov AA, Vrbanac AF, Li W, Perkins A, Matsutani T, Zhong Z, Dhar D, Navas-Molina JA, Xu J, Loomba R, Downes M, Yu RT, Evans RM, Dorrestein PC, Knight R, Benner C, Anstee QM, Karin M. Author Correction: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity. Nature. 2018 Jul 04. PMID: 29973714.
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    2. Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, Swafford AD, Thompson LR, Tripathi A, Xu ZZ, Zaneveld JR, Zhu Q, Caporaso JG, Dorrestein PC. Best practices for analysing microbiomes. Nat Rev Microbiol. 2018 May 23. PMID: 29795328.
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    3. McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q. American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018 May-Jun; 3(3). PMID: 29795809.
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    4. Sipe DM, Plath LD, Aksenov AA, Feldman JS, Bier ME. Characterization of Mega-Dalton-Sized Nanoparticles by Superconducting Tunnel Junction Cryodetection Mass Spectrometry. ACS Nano. 2018 Mar 27; 12(3):2591-2602. PMID: 29481053.
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    5. Zamuruyev KO, Borras E, Pettit DR, Aksenov AA, Simmons JD, Weimer BC, Schivo M, Kenyon NJ, Delplanque JP, Davis CE. Effect of temperature control on the metabolite content in exhaled breath condensate. Anal Chim Acta. 2018 May 02; 1006:49-60. PMID: 30016264.
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    6. Debnath A, Calvet CM, Jennings G, Zhou W, Aksenov A, Luth MR, Abagyan R, Nes WD, McKerrow JH, Podust LM. CYP51 is an essential drug target for the treatment of primary amoebic meningoencephalitis (PAM). PLoS Negl Trop Dis. 2017 12; 11(12):e0006104. PMID: 29284029.
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    7. Protsyuk I, Melnik AV, Nothias LF, Rappez L, Phapale P, Aksenov AA, Bouslimani A, Ryazanov S, Dorrestein PC, Alexandrov T. 3D molecular cartography using LC-MS facilitated by Optimus and 'ili software. Nat Protoc. 2018 Jan; 13(1):134-154. PMID: 29266099.
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    8. Shalapour S, Lin XJ, Bastian IN, Brain J, Burt AD, Aksenov AA, Vrbanac AF, Li W, Perkins A, Matsutani T, Zhong Z, Dhar D, Navas-Molina JA, Xu J, Loomba R, Downes M, Yu RT, Evans RM, Dorrestein PC, Knight R, Benner C, Anstee QM, Karin M. Erratum: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity. Nature. 2017 12 21; 552(7685):430. PMID: 29168501.
      View in: PubMed
    9. Shalapour S, Lin XJ, Bastian IN, Brain J, Burt AD, Aksenov AA, Vrbanac AF, Li W, Perkins A, Matsutani T, Zhong Z, Dhar D, Navas-Molina JA, Xu J, Loomba R, Downes M, Yu RT, Evans RM, Dorrestein PC, Knight R, Benner C, Anstee QM, Karin M. Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity. Nature. 2017 11 16; 551(7680):340-345. PMID: 29144460.
      View in: PubMed
    10. Borras E, Aksenov AA, Baird M, Novick B, Schivo M, Zamuruyev KO, Pasamontes A, Parry C, Foutouhi S, Venn-Watson S, Weimer BC, Davis CE. Exhaled breath condensate methods adapted from human studies using longitudinal metabolomics for predicting early health alterations in dolphins. Anal Bioanal Chem. 2017 Nov; 409(28):6523-6536. PMID: 29063162.
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    11. McCartney MM, Zrodnikov Y, Fung AG, LeVasseur MK, Pedersen JM, Zamuruyev KO, Aksenov AA, Kenyon NJ, Davis CE. An Easy to Manufacture Micro Gas Preconcentrator for Chemical Sensing Applications. ACS Sens. 2017 Aug 25; 2(8):1167-1174. PMID: 28753000.
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    12. Melnik AV, da Silva RR, Hyde ER, Aksenov AA, Vargas F, Bouslimani A, Protsyuk I, Jarmusch AK, Tripathi A, Alexandrov T, Knight R, Dorrestein PC. Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples. Anal Chem. 2017 Jul 18; 89(14):7549-7559. PMID: 28628333.
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    13. Aksenov AA, Zamuruyev KO, Pasamontes A, Brown JF, Schivo M, Foutouhi S, Weimer BC, Kenyon NJ, Davis CE. Analytical methodologies for broad metabolite coverage of exhaled breath condensate. J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Sep 01; 1061-1062:17-25. PMID: 28697414.
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    14. Pasamontes A, Aksenov AA, Schivo M, Rowles T, Smith CR, Schwacke LH, Wells RS, Yeates L, Venn-Watson S, Davis CE. Noninvasive Respiratory Metabolite Analysis Associated with Clinical Disease in Cetaceans: A Deepwater Horizon Oil Spill Study. Environ Sci Technol. 2017 May 16; 51(10):5737-5746. PMID: 28406294.
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    15. Schivo M, Aksenov AA, Pasamontes A, Cumeras R, Weisker S, Oberbauer AM, Davis CE. A rabbit model for assessment of volatile metabolite changes observed from skin: a pressure ulcer case study. J Breath Res. 2017 01 09; 11(1):016007. PMID: 28068292.
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    16. Zamuruyev KO, Aksenov AA, Pasamontes A, Brown JF, Pettit DR, Foutouhi S, Weimer BC, Schivo M, Kenyon NJ, Delplanque JP, Davis CE. Human breath metabolomics using an optimized non-invasive exhaled breath condensate sampler. J Breath Res. 2016 12 22; 11(1):016001. PMID: 28004639.
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    17. Zamuruyev KO, Aksenov AA, Baird M, Pasamontes A, Parry C, Foutouhi S, Venn-Watson S, Weimer BC, Delplanque JP, Davis CE. Enhanced non-invasive respiratory sampling from bottlenose dolphins for breath metabolomics measurements. J Breath Res. 2016 09 30; 10(4):046005. PMID: 27689905.
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    18. Cumeras R, Aksenov AA, Pasamontes A, Fung AG, Cianchetta AN, Doan H, Davis RM, Davis CE. Identification of fungal metabolites from inside Gallus gallus domesticus eggshells by non-invasively detecting volatile organic compounds (VOCs). Anal Bioanal Chem. 2016 Sep; 408(24):6649-58. PMID: 27457106; PMCID: PMC5014728 [Available on 09/01/17].
    19. Plath LD, Ozdemir A, Aksenov AA, Bier ME. Determination of iron content and dispersity of intact ferritin by superconducting tunnel junction cryodetection mass spectrometry. Anal Chem. 2015 Sep 01; 87(17):8985-93. PMID: 26266697.
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    20. Figueroa JA, Mansoor JK, Allen RP, Davis CE, Walby WF, Aksenov AA, Zhao W, Lewis WR, Schelegle ES. Exhaled volatile organic compounds in individuals with a history of high altitude pulmonary edema and varying hypoxia-induced responses. J Breath Res. 2015 Apr 20; 9(2):026004. PMID: 25891856.
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    21. Aksenov AA, Yeates L, Pasamontes A, Siebe C, Zrodnikov Y, Simmons J, McCartney MM, Deplanque JP, Wells RS, Davis CE. Metabolite content profiling of bottlenose dolphin exhaled breath. Anal Chem. 2014 Nov 04; 86(21):10616-24. PMID: 25254551; PMCID: PMC4221874.
    22. Schivo M, Aksenov AA, Linderholm AL, McCartney MM, Simmons J, Harper RW, Davis CE. Volatile emanations from in vitro airway cells infected with human rhinovirus. J Breath Res. 2014 Sep; 8(3):037110. PMID: 25189196; PMCID: PMC4182727.
    23. Mansoor JK, Schelegle ES, Davis CE, Walby WF, Zhao W, Aksenov AA, Pasamontes A, Figueroa J, Allen R. Analysis of volatile compounds in exhaled breath condensate in patients with severe pulmonary arterial hypertension. PLoS One. 2014; 9(4):e95331. PMID: 24748102; PMCID: PMC3991617.
    24. Aksenov AA, Sandrock CE, Zhao W, Sankaran S, Schivo M, Harper R, Cardona CJ, Xing Z, Davis CE. Cellular scent of influenza virus infection. Chembiochem. 2014 May 05; 15(7):1040-8. PMID: 24719290; PMCID: PMC4104277.
    25. Aksenov AA, Pasamontes A, Peirano DJ, Zhao W, Dandekar AM, Fiehn O, Ehsani R, Davis CE. Detection of Huanglongbing disease using differential mobility spectrometry. Anal Chem. 2014 Mar 04; 86(5):2481-8. PMID: 24484549.
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    26. Schivo M, Aksenov AA, Yeates LC, Pasamontes A, Davis CE. Diabetes and the metabolic syndrome: possibilities of a new breath test in a dolphin model. Front Endocrinol (Lausanne). 2013 Nov 25; 4:163. PMID: 24324455; PMCID: PMC3839089.
    27. Schivo M, Seichter F, Aksenov AA, Pasamontes A, Peirano DJ, Mizaikoff B, Kenyon NJ, Davis CE. A mobile instrumentation platform to distinguish airway disorders. J Breath Res. 2013 Mar; 7(1):017113. PMID: 23446184; PMCID: PMC3633523.
    28. Aksenov AA, Kapron J, Davis CE. Predicting compensation voltage for singly-charged ions in high-field asymmetric waveform ion mobility spectrometry (FAIMS). J Am Soc Mass Spectrom. 2012 Oct; 23(10):1794-8. PMID: 22872526.
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    29. Aksenov AA, Gojova A, Zhao W, Morgan JT, Sankaran S, Sandrock CE, Davis CE. Characterization of volatile organic compounds in human leukocyte antigen heterologous expression systems: a cell's "chemical odor fingerprint". Chembiochem. 2012 May 07; 13(7):1053-9. PMID: 22488873.
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    30. Stefan SE, Ehsan M, Pearson WL, Aksenov A, Boginski V, Bendiak B, Eyler JR. Differentiation of closely related isomers: application of data mining techniques in conjunction with variable wavelength infrared multiple photon dissociation mass spectrometry for identification of glucose-containing disaccharide ions. Anal Chem. 2011 Nov 15; 83(22):8468-76. PMID: 21954928.
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    31. Aksenov AA, Kapron JT. Behaviour of tetraalkylammonium ions in high-field asymmetric waveform ion mobility spectrometry. Rapid Commun Mass Spectrom. 2010 May 30; 24(10):1392-6. PMID: 20411577.
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    32. Aksenov AA, Bier ME. The analysis of polystyrene and polystyrene aggregates into the mega dalton mass range by cryodetection MALDI TOF MS. J Am Soc Mass Spectrom. 2008 Feb; 19(2):219-30. PMID: 18083529.
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