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Alan Jarmusch

TitlePostdoctoral Scholar
InstitutionUniversity of California San Diego
DepartmentSchool of Pharmacy and Pharmaceutical Science
Address9500 Gilman Drive #0719
La Jolla CA 92093
Phone858-822-5437
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Jarmusch A, Pirro V, Logsdon DL, Cooks RG. Direct ion generation from swabs. Talanta. 2018 Jul 01; 184:356-363. PMID: 29674054.
      View in: PubMed
    2. D'Hue C, Moore M, Summerlin DJ, Jarmusch A, Alfaro C, Mantravadi A, Bewley A, Gregory Farwell D, Cooks RG. Feasibility of desorption electrospray ionization mass spectrometry for diagnosis of oral tongue squamous cell carcinoma. Rapid Commun Mass Spectrom. 2018 Jan 30; 32(2):133-141. PMID: 29078250.
      View in: PubMed
    3. Pirro V, Llor RS, Jarmusch A, Alfaro CM, Cohen-Gadol AA, Hattab EM, Cooks RG. Analysis of human gliomas by swab touch spray-mass spectrometry: applications to intraoperative assessment of surgical margins and presence of oncometabolites. Analyst. 2017 Oct 23; 142(21):4058-4066. PMID: 28984323.
      View in: PubMed
    4. Cordeiro FB, Ferreira CR, Sobreira TJP, Yannell KE, Jarmusch A, Cedenho AP, Lo Turco EG, Cooks RG. Multiple reaction monitoring (MRM)-profiling for biomarker discovery applied to human polycystic ovarian syndrome. Rapid Commun Mass Spectrom. 2017 Sep 15; 31(17):1462-1470. PMID: 28656689.
      View in: PubMed
    5. Yannell KE, Smith K, Alfaro CM, Jarmusch A, Pirro V, Cooks RG. N-Acetylaspartate and 2-Hydroxyglutarate Assessed in Human Brain Tissue by Mass Spectrometry as Neuronal Markers of Oncogenesis. Clin Chem. 2017 Nov; 63(11):1766-1767. PMID: 28877920.
      View in: PubMed
    6. Melnik AV, da Silva RR, Hyde ER, Aksenov AA, Vargas F, Bouslimani A, Protsyuk I, Jarmusch A, Tripathi A, Alexandrov T, Knight R, Dorrestein PC. Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples. Anal Chem. 2017 Jul 18; 89(14):7549-7559. PMID: 28628333.
      View in: PubMed
    7. Pirro V, Alfaro CM, Jarmusch A, Hattab EM, Cohen-Gadol AA, Cooks RG. Intraoperative assessment of tumor margins during glioma resection by desorption electrospray ionization-mass spectrometry. Proc Natl Acad Sci U S A. 2017 06 27; 114(26):6700-6705. PMID: 28607048.
      View in: PubMed
    8. Pirro V, Jarmusch A, Alfaro CM, Hattab EM, Cohen-Gadol AA, Cooks RG. Utility of neurological smears for intrasurgical brain cancer diagnostics and tumour cell percentage by DESI-MS. Analyst. 2017 Jan 26; 142(3):449-454. PMID: 28112301.
      View in: PubMed
    9. Petras D, Jarmusch A, Dorrestein PC. From single cells to our planet-recent advances in using mass spectrometry for spatially resolved metabolomics. Curr Opin Chem Biol. 2017 Feb; 36:24-31. PMID: 28086192.
      View in: PubMed
    10. Jarmusch A, Alfaro CM, Pirro V, Hattab EM, Cohen-Gadol AA, Cooks RG. Differential Lipid Profiles of Normal Human Brain Matter and Gliomas by Positive and Negative Mode Desorption Electrospray Ionization - Mass Spectrometry Imaging. PLoS One. 2016; 11(9):e0163180. PMID: 27658243.
      View in: PubMed
    11. Pirro V, Guffey SC, Sepúlveda MS, Mahapatra CT, Ferreira CR, Jarmusch A, Cooks RG. Lipid dynamics in zebrafish embryonic development observed by DESI-MS imaging and nanoelectrospray-MS. Mol Biosyst. 2016 06; 12(7):2069-79. PMID: 27120110; PMCID: PMC4916021 [Available on 07/21/17].
    12. Alfaro CM, Jarmusch A, Pirro V, Kerian KS, Masterson TA, Cheng L, Cooks RG. Ambient ionization mass spectrometric analysis of human surgical specimens to distinguish renal cell carcinoma from healthy renal tissue. Anal Bioanal Chem. 2016 Aug; 408(20):5407-14. PMID: 27206411; PMCID: PMC4939286 [Available on 08/01/17].
    13. Jarmusch A, Pirro V, Baird Z, Hattab EM, Cohen-Gadol AA, Cooks RG. Lipid and metabolite profiles of human brain tumors by desorption electrospray ionization-MS. Proc Natl Acad Sci U S A. 2016 Feb 09; 113(6):1486-91. PMID: 26787885; PMCID: PMC4760779.
    14. Ferreira CR, Yannell KE, Jarmusch A, Pirro V, Ouyang Z, Cooks RG. Ambient Ionization Mass Spectrometry for Point-of-Care Diagnostics and Other Clinical Measurements. Clin Chem. 2016 Jan; 62(1):99-110. PMID: 26467505.
      View in: PubMed
    15. Jarmusch A, Kerian KS, Pirro V, Peat T, Thompson CA, Ramos-Vara JA, Childress MO, Cooks RG. Characteristic lipid profiles of canine non-Hodgkin's lymphoma from surgical biopsy tissue sections and fine needle aspirate smears by desorption electrospray ionization--mass spectrometry. Analyst. 2015 Sep 21; 140(18):6321-9. PMID: 26236993.
      View in: PubMed
    16. Jarmusch A, Musso AM, Shymanovich T, Jarmusch SA, Weavil MJ, Lovin ME, Ehrmann BM, Saari S, Nichols DE, Faeth SH, Cech NB. Comparison of electrospray ionization and atmospheric pressure photoionization liquid chromatography mass spectrometry methods for analysis of ergot alkaloids from endophyte-infected sleepygrass (Achnatherum robustum). J Pharm Biomed Anal. 2016 Jan 05; 117:11-7. PMID: 26340558.
      View in: PubMed
    17. Ferreira CR, Jarmusch A, Pirro V, Alfaro CM, González-Serrano AF, Niemann H, Wheeler MB, Rabel RA, Hallett JE, Houser R, Kaufman A, Cooks RG. Ambient ionisation mass spectrometry for lipid profiling and structural analysis of mammalian oocytes, preimplantation embryos and stem cells. Reprod Fertil Dev. 2015 May; 27(4):621-37. PMID: 25763644.
      View in: PubMed
    18. Cooks RG, Jarmusch A, Ferreira CR, Pirro V. Skin molecule maps using mass spectrometry. Proc Natl Acad Sci U S A. 2015 Apr 28; 112(17):5261-2. PMID: 25902544; PMCID: PMC4418909.
    19. Kerian KS, Jarmusch A, Pirro V, Koch MO, Masterson TA, Cheng L, Cooks RG. Differentiation of prostate cancer from normal tissue in radical prostatectomy specimens by desorption electrospray ionization and touch spray ionization mass spectrometry. Analyst. 2015 Feb 21; 140(4):1090-8. PMID: 25521825; PMCID: PMC4314440.
    20. Pirro V, Jarmusch A, Vincenti M, Cooks RG. Direct drug analysis from oral fluid using medical swab touch spray mass spectrometry. Anal Chim Acta. 2015 Feb 25; 861:47-54. PMID: 25702273; PMCID: PMC4513665.
    21. Shymanovich T, Saari S, Lovin ME, Jarmusch A, Jarmusch SA, Musso AM, Charlton ND, Young CA, Cech NB, Faeth SH. Alkaloid variation among epichloid endophytes of sleepygrass (Achnatherum robustum) and consequences for resistance to insect herbivores. J Chem Ecol. 2015 Jan; 41(1):93-104. PMID: 25501262.
      View in: PubMed
    22. Jarmusch A, Pirro V, Kerian KS, Cooks RG. Detection of strep throat causing bacterium directly from medical swabs by touch spray-mass spectrometry. Analyst. 2014 Oct 07; 139(19):4785-9. PMID: 25102079; PMCID: PMC4146688.
    23. Hamid AM, Jarmusch A, Pirro V, Pincus DH, Clay BG, Gervasi G, Cooks RG. Rapid discrimination of bacteria by paper spray mass spectrometry. Anal Chem. 2014 Aug 05; 86(15):7500-7. PMID: 25014713.
      View in: PubMed
    24. Figueroa M, Jarmusch A, Raja HA, El-Elimat T, Kavanaugh JS, Horswill AR, Cooks RG, Cech NB, Oberlies NH. Polyhydroxyanthraquinones as quorum sensing inhibitors from the guttates of Penicillium restrictum and their analysis by desorption electrospray ionization mass spectrometry. J Nat Prod. 2014 Jun 27; 77(6):1351-8. PMID: 24911880; PMCID: PMC4073659.
    25. Kerian KS, Jarmusch A, Cooks RG. Touch spray mass spectrometry for in situ analysis of complex samples. Analyst. 2014 Jun 07; 139(11):2714-20. PMID: 24756256; PMCID: PMC4063212.
    26. Jarmusch A, Cooks RG. Emerging capabilities of mass spectrometry for natural products. Nat Prod Rep. 2014 Jun; 31(6):730-8. PMID: 24700087.
      View in: PubMed
    27. Eberlin LS, Norton I, Orringer D, Dunn IF, Liu X, Ide JL, Jarmusch A, Ligon KL, Jolesz FA, Golby AJ, Santagata S, Agar NY, Cooks RG. Ambient mass spectrometry for the intraoperative molecular diagnosis of human brain tumors. Proc Natl Acad Sci U S A. 2013 Jan 29; 110(5):1611-6. PMID: 23300285; PMCID: PMC3562800.