Adrian Jinich

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Title(s)	Assistant Professor, School of Pharmacy and Pharmaceutical Science
School	Vc-health Sciences-schools
Address	9500 Gilman Drive # La Jolla CA 92093
vCard	Download vCard

Bibliographic

publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Alkamines reveal a hidden layer of steroid and drug metabolism. bioRxiv. 2026 May 15. Agongo J, Panga SR, Xing S, Charron-Lamoureux V, Gouda H, Abiead YE, Nelson MR, Patan A, Terrazas MC, Kvitne KE, Seo JI, Rajkumar P, Giddings S, Mannochio-Russo H, Zemlin J, Mohanty I, Sala-Climent M, Hu Z, Delaray V, Yeboah SK, Zhao HN, Caraballo-Rodríguez AM, Williams CE, Williams CL, Gonçalves Nunes WD, Dorrestein K, Cao J, Shepherd I, Bock R, Roethler N, Jinich A, Burnett LA, Carver J, Devine RN, Arnatt CK, Murray IA, Knight R, Guma M, Hagey LR, Perdew G, Bandeira N, Wang M, Chu H, Siegel D, Dorrestein PC. PMID: 42182470; PMCID: PMC13192845.

View in: PubMed Mentions:
Inferring Local Protein Structural Similarity from Sequence Alone. J Chem Inf Model. 2026 May 25; 66(10):5699-5707. Ma Z, Espinoza Herrera J, Buitrago-Delgado E, Bethel NP, Jinich A. PMID: 42068288; PMCID: PMC13213830.

View in: PubMed Mentions: Fields:
Che Chemistry Med Medical Informatics
Translation:Cells
A searchable metadata network graph for microbiome metabolomics. bioRxiv. 2026 Feb 05. Charron-Lamoureux V, Xing S, Patan A, Walker C, Monter RA, Abiead YE, Zhao HN, Patel L, Weng Y, Gonzalez A, Ackermann G, Deleray V, Gandhi V, Mohanty I, Caraballo-Rodriguez AM, Kvitne KE, Zuffa S, Norman A, Martin A, Chin L, Paz-Gonzalez R, Sala-Climent M, Suryawinata N, Zemlin J, Gouda H, Hu Z, Norton G, Rajkumar P, Molina AJ, Bergstrom J, Pinner M, Giddings S, Aron AT, Liang L, Dahesh S, Lamichhane S, Reilly ER, Nizet V, Skrip A, Lukowski AL, Shore SFH, Ghoshal S, Engevik MA, Horvath TD, Renwick S, Agongo J, Marco ML, Mazmanian SK, Wang M, Yang H, McDonald D, Guma M, Stegmann E, Hernandez Perez N, Stincone P, Kemen E, Pakkir Shah AK, Bode L, Petras D, Siegel D, Raffatellu M, Patterson AD, Devkota S, Jinich A, Knight R, Zengler K, Dorrestein PC. PMID: 41676651; PMCID: PMC12889665.

View in: PubMed Mentions:
Genes required for Mycobacterium tuberculosis to survive the transition from aerosol to pulmonary alveolar lining fluid and early infection in a model of transmission. bioRxiv. 2025 Sep 15. Singh PR, Mishra S, Jinich A, Jiang X, Tsang F, DeJesus M, Rhee KY, Kaner RJ, Leopold PL, Crystal RG, Nathan C. PMID: 41000987; PMCID: PMC12458190.

View in: PubMed Mentions:
The Mycobacterium tuberculosis Transposon Sequencing Database (MtbTnDB): A Large-Scale Guide to Genetic Conditional Essentiality. Mol Microbiol. 2025 Jul; 124(1):91-101. Jinich A, Zaveri A, DeJesus MA, Spencer A, Almada-Monter R, Flores-Bautista E, Smith CM, Sassetti CM, Rock JM, Ehrt S, Schnappinger D, Ioerger TR, Rhee KY. PMID: 40527579; PMCID: PMC12242109.

View in: PubMed Mentions: Fields:
Mic Microbiology Mol Molecular Biology
Translation:Cells
Candidate transmission survival genome of Mycobacterium tuberculosis. Proc Natl Acad Sci U S A. 2025 Mar 11; 122(10):e2425981122. Mishra S, Singh PR, Hu X, Lopez-Quezada L, Jinich A, Jahn R, Geurts L, Shen N, DeJesus MA, Hartman T, Rhee K, Zimmerman M, Dartois V, Jones RM, Jiang X, Almada-Monter R, Bourouiba L, Nathan C. PMID: 40053362; PMCID: PMC11912377.

View in: PubMed Mentions: 7 Fields:
Sci Science
Translation:Humans Cells
Annotation-free prediction of microbial dioxygen utilization. mSystems. 2024 10 22; 9(10):e0076324. Flamholz AI, Goldford JE, Richter PA, Larsson EM, Jinich A, Fischer WW, Newman DK. PMID: 39230322; PMCID: PMC11494890.

View in: PubMed Mentions: 2 Fields:
Mic Microbiology
Genome-wide screen identifies host loci that modulate Mycobacterium tuberculosis fitness in immunodivergent mice. G3 (Bethesda). 2023 08 30; 13(9). Meade RK, Long JE, Jinich A, Rhee KY, Ashbrook DG, Williams RW, Sassetti CM, Smith CM. PMID: 37405387; PMCID: PMC10468300.

View in: PubMed Mentions: 8 Fields:
Gen Genetics Mol Molecular Biology
Translation:Animals Cells
Genome-wide screen identifies host loci that modulate M. tuberculosis fitness in immunodivergent mice. bioRxiv. 2023 Mar 06. Meade RK, Long JE, Jinich A, Rhee KY, Ashbrook DG, Williams RW, Sassetti CM, Smith CM. PMID: 36945430; PMCID: PMC10028809.

View in: PubMed Mentions:
Enzyme Substrate Prediction from Three-Dimensional Feature Representations Using Space-Filling Curves. J Chem Inf Model. 2023 03 13; 63(5):1637-1648. Rappoport D, Jinich A. PMID: 36802628.

View in: PubMed Mentions: 4 Fields:
Che Chemistry Med Medical Informatics
On scientific understanding with artificial intelligence. Nat Rev Phys. 2022; 4(12):761-769. Krenn M, Pollice R, Guo SY, Aldeghi M, Cervera-Lierta A, Friederich P, Dos Passos Gomes G, Häse F, Jinich A, Nigam A, Yao Z, Aspuru-Guzik A. PMID: 36247217; PMCID: PMC9552145.

View in: PubMed Mentions: 59
Deciphering functional redundancy and energetics of malate oxidation in mycobacteria. J Biol Chem. 2022 05; 298(5):101859. Harold LK, Jinich A, Hards K, Cordeiro A, Keighley LM, Cross A, McNeil MB, Rhee K, Cook GM. PMID: 35337802; PMCID: PMC9062433.

View in: PubMed Mentions: 12 Fields:
Bio Biochemistry
Translation:Cells
Multiple acyl-CoA dehydrogenase deficiency kills Mycobacterium tuberculosis in vitro and during infection. Nat Commun. 2021 11 15; 12(1):6593. Beites T, Jansen RS, Wang R, Jinich A, Rhee KY, Schnappinger D, Ehrt S. PMID: 34782606; PMCID: PMC8593149.

View in: PubMed Mentions: 22 Fields:
Bio Biology Sci Science
Translation:Animals Cells
A thermodynamic atlas of carbon redox chemical space. Proc Natl Acad Sci U S A. 2020 12 29; 117(52):32910-32918. Jinich A, Sanchez-Lengeling B, Ren H, Goldford JE, Noor E, Sanders JN, Segrè D, Aspuru-Guzik A. PMID: 33376214; PMCID: PMC7777073.

View in: PubMed Mentions: 8 Fields:
Sci Science
Translation:Cells
Extreme Antagonism Arising from Gene-Environment Interactions. Biophys J. 2020 11 17; 119(10):2074-2086. Wytock TP, Zhang M, Jinich A, Fiebig A, Crosson S, Motter AE. PMID: 33068537; PMCID: PMC7732749.

View in: PubMed Mentions: 5 Fields:
Bio Biophysics
Translation:Cells
Two for the price of one: Attacking the energetic-metabolic hub of mycobacteria to produce new chemotherapeutic agents. Prog Biophys Mol Biol. 2020 05; 152:35-44. Hards K, Adolph C, Harold LK, McNeil MB, Cheung CY, Jinich A, Rhee KY, Cook GM. PMID: 31733221.

View in: PubMed Mentions: 14 Fields:
Bio Biophysics Mol Molecular Biology
Translation:Humans Cells
A Mixed Quantum Chemistry/Machine Learning Approach for the Fast and Accurate Prediction of Biochemical Redox Potentials and Its Large-Scale Application to 315 000 Redox Reactions. ACS Cent Sci. 2019 Jul 24; 5(7):1199-1210. Jinich A, Sanchez-Lengeling B, Ren H, Harman R, Aspuru-Guzik A. PMID: 31404220; PMCID: PMC6661861.

View in: PubMed Mentions: 24
Empowering young innovators. Science. 2019 Mar 22; 363(6433):1294. Lengeling TS, Jinich A. PMID: 30898926.

View in: PubMed Mentions: 1 Fields:
Sci Science
Quantum chemistry reveals thermodynamic principles of redox biochemistry. PLoS Comput Biol. 2018 10; 14(10):e1006471. Jinich A, Flamholz A, Ren H, Kim SJ, Sanchez-Lengeling B, Cotton CAR, Noor E, Aspuru-Guzik A, Bar-Even A. PMID: 30356318; PMCID: PMC6218094.

View in: PubMed Mentions: 13 Fields:
Com Computational Biology
Translation:Cells
Quantum chemical approach to estimating the thermodynamics of metabolic reactions. Sci Rep. 2014 Nov 12; 4:7022. Jinich A, Rappoport D, Dunn I, Sanchez-Lengeling B, Olivares-Amaya R, Noor E, Even AB, Aspuru-Guzik A. PMID: 25387603; PMCID: PMC5381496.

View in: PubMed Mentions: 10 Fields:
Sci Science
High-resolution profiling of stationary-phase survival reveals yeast longevity factors and their genetic interactions. PLoS Genet. 2014 Feb; 10(2):e1004168. Garay E, Campos SE, González de la Cruz J, Gaspar AP, Jinich A, Deluna A. PMID: 24586198; PMCID: PMC3937222.

View in: PubMed Mentions: 60 Fields:
Gen Genetics
Translation:Humans Animals
Cell lineage analysis of the mammalian female germline. PLoS Genet. 2012; 8(2):e1002477. Reizel Y, Itzkovitz S, Adar R, Elbaz J, Jinich A, Chapal-Ilani N, Maruvka YE, Nevo N, Marx Z, Horovitz I, Wasserstrom A, Mayo A, Shur I, Benayahu D, Skorecki K, Segal E, Dekel N, Shapiro E. PMID: 22383887; PMCID: PMC3285577.

View in: PubMed Mentions: 39 Fields:
Gen Genetics
Translation:Animals Cells
Invariant distribution of promoter activities in Escherichia coli. PLoS Comput Biol. 2009 Oct; 5(10):e1000545. Zaslaver A, Kaplan S, Bren A, Jinich A, Mayo A, Dekel E, Alon U, Itzkovitz S. PMID: 19851443; PMCID: PMC2758578.

View in: PubMed Mentions: 46 Fields:
Com Computational Biology
Translation:Cells