Abigail Dommer

Title(s)	Postdoctoral Scholar, Chemistry and Biochemistry
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. Int J High Perform Comput Appl. 2023 Jan; 37(1):28-44. Dommer A, Casalino L, Kearns F, Rosenfeld M, Wauer N, Ahn SH, Russo J, Oliveira S, Morris C, Bogetti A, Trifan A, Brace A, Sztain T, Clyde A, Ma H, Chennubhotla C, Lee H, Turilli M, Khalid S, Tamayo-Mendoza T, Welborn M, Christensen A, Smith DG, Qiao Z, Sirumalla SK, O'Connor M, Manby F, Anandkumar A, Hardy D, Phillips J, Stern A, Romero J, Clark D, Dorrell M, Maiden T, Huang L, McCalpin J, Woods C, Gray A, Williams M, Barker B, Rajapaksha H, Pitts R, Gibbs T, Stone J, Zuckerman DM, Mulholland AJ, Miller T, Jha S, Ramanathan A, Chong L, Amaro RE. PMID: 36647365; PMCID: PMC9527558.

View in: PubMed Mentions: 1
Amino Acids Are Driven to the Interface by Salts and Acidic Environments. J Phys Chem Lett. 2022 Mar 31; 13(12):2824-2829. Angle KJ, Nowak CM, Davasam A, Dommer AC, Wauer NA, Amaro RE, Grassian VH. PMID: 35324217.

View in: PubMed Mentions: Fields:
Che Chemistry
#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol. bioRxiv. 2021 Nov 15. Dommer A, Casalino L, Kearns F, Rosenfeld M, Wauer N, Ahn SH, Russo J, Oliveira S, Morris C, Bogetti A, Trifan A, Brace A, Sztain T, Clyde A, Ma H, Chennubhotla C, Lee H, Turilli M, Khalid S, Tamayo-Mendoza T, Welborn M, Christensen A, Smith DGA, Qiao Z, Sirumalla SK, O'Connor M, Manby F, Anandkumar A, Hardy D, Phillips J, Stern A, Romero J, Clark D, Dorrell M, Maiden T, Huang L, McCalpin J, Woods C, Gray A, Williams M, Barker B, Rajapaksha H, Pitts R, Gibbs T, Stone J, Zuckerman D, Mulholland A, Miller T, Jha S, Ramanathan A, Chong L, Amaro R. PMID: 34816263; PMCID: PMC8609898.

View in: PubMed Mentions: 1
Calcium bridging drives polysaccharide co-adsorption to a proxy sea surface microlayer. Phys Chem Chem Phys. 2021 Aug 04; 23(30):16401-16416. Carter-Fenk KA, Dommer AC, Fiamingo ME, Kim J, Amaro RE, Allen HC. PMID: 34318808.

View in: PubMed Mentions: Fields:
Bio Biophysics Che Chemistry Phy Physics
Cation-Driven Lipopolysaccharide Morphological Changes Impact Heterogeneous Reactions of Nitric Acid with Sea Spray Aerosol Particles. J Phys Chem Lett. 2021 May 27; 12(20):5023-5029. Lee C, Dommer AC, Schiffer JM, Amaro RE, Grassian VH, Prather KA. PMID: 34024101.

View in: PubMed Mentions: Fields:
Che Chemistry
A multiscale coarse-grained model of the SARS-CoV-2 virion. Biophys J. 2021 03 16; 120(6):1097-1104. Yu A, Pak AJ, He P, Monje-Galvan V, Casalino L, Gaieb Z, Dommer AC, Amaro RE, Voth GA. PMID: 33253634; PMCID: PMC7695975.

View in: PubMed Mentions: 43 Fields:
Bio Biophysics
Translation:Cells
AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics. bioRxiv. 2020 Nov 20. Casalino L, Dommer A, Gaieb Z, Barros EP, Sztain T, Ahn SH, Trifan A, Brace A, Bogetti A, Ma H, Lee H, Turilli M, Khalid S, Chong L, Simmerling C, Hardy DJ, Maia JDC, Phillips JC, Kurth T, Stern A, Huang L, McCalpin J, Tatineni M, Gibbs T, Stone JE, Jha S, Ramanathan A, Amaro RE. PMID: 33236007; PMCID: PMC7685317.

View in: PubMed Mentions:
The flexibility of ACE2 in the context of SARS-CoV-2 infection. Biophys J. 2021 03 16; 120(6):1072-1084. Barros EP, Casalino L, Gaieb Z, Dommer AC, Wang Y, Fallon L, Raguette L, Belfon K, Simmerling C, Amaro RE. PMID: 33189680; PMCID: PMC7661960.

View in: PubMed Mentions: 51 Fields:
Bio Biophysics
Translation:Humans Cells
A Multiscale Coarse-grained Model of the SARS-CoV-2 Virion. bioRxiv. 2020 Oct 02. Yu A, Pak AJ, He P, Monje-Galvan V, Casalino L, Gaieb Z, Dommer AC, Amaro RE, Voth GA. PMID: 33024966; PMCID: PMC7536869.

View in: PubMed Mentions:
Beyond Shielding: The Roles of Glycans in the SARS-CoV-2 Spike Protein. ACS Cent Sci. 2020 Oct 28; 6(10):1722-1734. Casalino L, Gaieb Z, Goldsmith JA, Hjorth CK, Dommer AC, Harbison AM, Fogarty CA, Barros EP, Taylor BC, McLellan JS, Fadda E, Amaro RE. PMID: 33140034; PMCID: PMC7523240.

View in: PubMed Mentions: 305
The flexibility of ACE2 in the context of SARS-CoV-2 infection. bioRxiv. 2020 Sep 16. Barros EP, Casalino L, Gaieb Z, Dommer AC, Wang Y, Fallon L, Raguette L, Belfon K, Simmerling C, Amaro RE. PMID: 32995769; PMCID: PMC7523095.

View in: PubMed Mentions:
Beyond Shielding: The Roles of Glycans in SARS-CoV-2 Spike Protein. bioRxiv. 2020 Sep 04. Casalino L, Gaieb Z, Goldsmith JA, Hjorth CK, Dommer AC, Harbison AM, Fogarty CA, Barros EP, Taylor BC, McLellan JS, Fadda E, Amaro RE. PMID: 32577644; PMCID: PMC7302197.

View in: PubMed Mentions:
Insights into the behavior of nonanoic acid and its conjugate base at the air/water interface through a combined experimental and theoretical approach. Chem Sci. 2020 Oct 21; 11(39):10647-10656. Luo M, Wauer NA, Angle KJ, Dommer AC, Song M, Nowak CM, Amaro RE, Grassian VH. PMID: 33144932; PMCID: PMC7583472.

View in: PubMed Mentions: 3
Mesoscale All-Atom Influenza Virus Simulations Suggest New Substrate Binding Mechanism. ACS Cent Sci. 2020 Feb 26; 6(2):189-196. Durrant JD, Kochanek SE, Casalino L, Ieong PU, Dommer AC, Amaro RE. PMID: 32123736; PMCID: PMC7048371.

View in: PubMed Mentions: 36
Surfactant Charge Modulates Structure and Stability of Lipase-Embedded Monolayers at Marine-Relevant Aerosol Surfaces. Langmuir. 2019 07 09; 35(27):9050-9060. Luo M, Dommer AC, Schiffer JM, Rez DJ, Mitchell AR, Amaro RE, Grassian VH. PMID: 31188612.

View in: PubMed Mentions: 1 Fields:
Che Chemistry
Translation:Cells
A Computational Assay that Explores the Hemagglutinin/Neuraminidase Functional Balance Reveals the Neuraminidase Secondary Site as a Novel Anti-Influenza Target. ACS Cent Sci. 2018 Nov 28; 4(11):1570-1577. Amaro RE, Ieong PU, Huber G, Dommer A, Steven AC, Bush RM, Durrant JD, Votapka LW. PMID: 30555910; PMCID: PMC6276040.

View in: PubMed Mentions: 15
Impacts of Lipase Enzyme on the Surface Properties of Marine Aerosols. J Phys Chem Lett. 2018 Jul 19; 9(14):3839-3849. Schiffer JM, Luo M, Dommer AC, Thoron G, Pendergraft M, Santander MV, Lucero D, Pecora de Barros E, Prather KA, Grassian VH, Amaro RE. PMID: 29916254.

View in: PubMed Mentions: 3 Fields:
Che Chemistry
Translation:Animals Cells
Sea Spray Aerosol Structure and Composition Using Cryogenic Transmission Electron Microscopy. ACS Cent Sci. 2016 Jan 27; 2(1):40-47. Patterson JP, Collins DB, Michaud JM, Axson JL, Sultana CM, Moser T, Dommer AC, Conner J, Grassian VH, Stokes MD, Deane GB, Evans JE, Burkart MD, Prather KA, Gianneschi NC. PMID: 26878061; PMCID: PMC4731829.

View in: PubMed Mentions: 6