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    Timothy Baker

    TitleResearcher
    SchoolUniversity of California, San Diego
    DepartmentChemistry and Biochemistry
    Address9500 Gilman Drive #0378
    CA La Jolla 92093
    Phone858-534-5845
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      Collapse Research 
      Collapse Research Activities and Funding
      Parallel Software for Fast, Automated Determination of Virus Structures
      NIH/NIGMS R01GM087708Jun 1, 2010 - May 31, 2014
      Role: Principal Investigator
      Parallel Software for Fast, Automated Determination of Virus Structures
      NIH/NIAID R56AI079095May 15, 2009 - Apr 30, 2010
      Role: Principal Investigator
      Transmission Electron Microscope
      NIH/NCRR S10RR020016Jul 15, 2004 - Jul 14, 2005
      Role: Principal Investigator
      National Resource for Automated Molecular Microscopy
      NIH P41RR017573Sep 30, 2002 - Jul 31, 2012
      Role: Co-Investigator
      Virus Assembly and Transmission
      NIH P01AI045976Sep 1, 1999 - Jul 31, 2010
      Role: Co-Investigator
      STRUCTURAL BASIS FOR VIRAL INFECTION
      NIH P01AI035212Jan 1, 1994 - Dec 31, 1998
      Role: Co-Investigator
      THREE-DIMENSIONAL ELECTRON MICROSCOPY OF MACROMOLECULES
      NIH/NIGMS R13GM049914Jun 25, 1993 - Jun 24, 1994
      Role: Principal Investigator
      Microscopy & Image Analysis of Unstained Macromolecules
      NIH/NIGMS R01GM033050Jun 1, 1983 - May 31, 2018
      Role: Principal Investigator
      Microscopy &Image Analysis of Unstained Macromolecules
      NIH/NIGMS R37GM033050Jun 1, 1983 - Mar 31, 2014
      Role: Principal Investigator

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Li Z, Wang D, Gu Y, Song S, He M, Shi J, Liu X, Wei S, Li J, Yu H, Zheng Q, Yan X, Baker T, Zhang J, McLellan JS, Li S, Xia N. Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus. MBio. 2017 Sep 26; 8(5). PMID: 28951471.
        View in: PubMed
      2. Xu L, Zheng Q, Li S, He M, Wu Y, Li Y, Zhu R, Yu H, Hong Q, Jiang J, Li Z, Li S, Zhao H, Yang L, Hou W, Wang W, Ye X, Zhang J, Baker T, Cheng T, Zhou ZH, Yan X, Xia N. Atomic structures of Coxsackievirus A6 and its complex with a neutralizing antibody. Nat Commun. 2017 Sep 11; 8(1):505. PMID: 28894095.
        View in: PubMed
      3. Mietzsch M, Kailasan S, Garrison J, Ilyas M, Chipman P, Kantola K, Janssen ME, Spear J, Sousa D, McKenna R, Brown K, Söderlund-Venermo M, Baker T, Agbandje-McKenna M. Structural Insights into Human Bocaparvoviruses. J Virol. 2017 Jun 01; 91(11). PMID: 28331084.
        View in: PubMed
      4. Drouin LM, Lins B, Janssen M, Bennett A, Chipman P, McKenna R, Chen W, Muzyczka N, Cardone G, Baker T, Agbandje-McKenna M. Cryo-electron Microscopy Reconstruction and Stability Studies of the Wild Type and the R432A Variant of Adeno-associated Virus Type 2 Reveal that Capsid Structural Stability Is a Major Factor in Genome Packaging. J Virol. 2016 Oct 01; 90(19):8542-51. PMID: 27440903; PMCID: PMC5021403 [Available on 03/12/17].
      5. Li Z, Yan X, Yu H, Wang D, Song S, Li Y, He M, Hong Q, Zheng Q, Zhao Q, Gu Y, Zhang J, Janssen ME, Cardone G, Olson NH, Baker T, Li S, Xia N. The C-Terminal Arm of the Human Papillomavirus Major Capsid Protein Is Immunogenic and Involved in Virus-Host Interaction. Structure. 2016 Jun 07; 24(6):874-85. PMID: 27276427.
        View in: PubMed
      6. Suzuki Y, Cardone G, Restrepo D, Zavattieri PD, Baker T, Tezcan FA. Self-assembly of coherently dynamic, auxetic, two-dimensional protein crystals. Nature. 2016 05 19; 533(7603):369-73. PMID: 27135928; PMCID: PMC4991361 [Available on 11/02/16].
      7. Jose J, Tang J, Taylor AB, Baker T, Kuhn RJ. Fluorescent Protein-Tagged Sindbis Virus E2 Glycoprotein Allows Single Particle Analysis of Virus Budding from Live Cells. Viruses. 2015 Nov 27; 7(12):6182-99. PMID: 26633461; PMCID: PMC4690852.
      8. Chen LS, Hung RJ, Baker T, Horton A, Culverhouse R, Saccone N, Cheng I, Deng B, Han Y, Hansen HM, Horsman J, Kim C, Lutz S, Rosenberger A, Aben KK, Andrew AS, Breslau N, Chang SC, Dieffenbach AK, Dienemann H, Frederiksen B, Han J, Hatsukami DK, Johnson EO, Pande M, Wrensch MR, McLaughlin J, Skaug V, van der Heijden HF, Wampfler J, Wenzlaff A, Woll P, Zienolddiny S, Bickeböller H, Brenner H, Duell EJ, Haugen A, Heinrich J, Hokanson JE, Hunter DJ, Kiemeney LA, Lazarus P, Le Marchand L, Liu G, Mayordomo J, Risch A, Schwartz AG, Teare D, Wu X, Wiencke JK, Yang P, Zhang ZF, Spitz MR, Kraft P, Amos CI, Bierut LJ. CHRNA5 risk variant predicts delayed smoking cessation and earlier lung cancer diagnosis--a meta-analysis. J Natl Cancer Inst. 2015 May; 107(5). PMID: 25873736; PMCID: PMC4822525.
      9. Tseng YS, Gurda BL, Chipman P, McKenna R, Afione S, Chiorini JA, Muzyczka N, Olson NH, Baker T, Kleinschmidt J, Agbandje-McKenna M. Adeno-associated virus serotype 1 (AAV1)- and AAV5-antibody complex structures reveal evolutionary commonalities in parvovirus antigenic reactivity. J Virol. 2015 Feb; 89(3):1794-808. PMID: 25410874; PMCID: PMC4300747.
      10. Janssen ME, Takagi Y, Parent KN, Cardone G, Nibert ML, Baker T. Three-dimensional structure of a protozoal double-stranded RNA virus that infects the enteric pathogen Giardia lamblia. J Virol. 2015 Jan 15; 89(2):1182-94. PMID: 25378500; PMCID: PMC4300635.
      11. Parent KN, Tang J, Cardone G, Gilcrease EB, Janssen ME, Olson NH, Casjens SR, Baker T. Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain. Virology. 2014 Sep; 464-465:55-66. PMID: 25043589; PMCID: PMC4157081.
      12. Xiao X, Cheng J, Tang J, Fu Y, Jiang D, Baker T, Ghabrial SA, Xie J. A novel partitivirus that confers hypovirulence on plant pathogenic fungi. J Virol. 2014 Sep 01; 88(17):10120-33. PMID: 24965462; PMCID: PMC4136314.
      13. Tang J, Kearney BM, Wang Q, Doerschuk PC, Baker T, Johnson JE. Dynamic and geometric analyses of Nudaurelia capensis ? virus maturation reveal the energy landscape of particle transitions. J Mol Recognit. 2014 Apr; 27(4):230-7. PMID: 24591180; PMCID: PMC3987702.
      14. Parent KN, Erb ML, Cardone G, Nguyen K, Gilcrease EB, Porcek NB, Pogliano J, Baker T, Casjens SR. OmpA and OmpC are critical host factors for bacteriophage Sf6 entry in Shigella. Mol Microbiol. 2014 Apr; 92(1):47-60. PMID: 24673644; PMCID: PMC4034267.
      15. Cardone G, Yan X, Sinkovits RS, Baker T. A Real-Time 3D Reconstruction System for Screening Icosahedral Particles Under Different Conditions at the Microscope. Microsc Microanal. 2013 Aug; 19(Suppl 2):764-765. PMID: 25242888.
        View in: PubMed
      16. Cardone G, Yan X, Sinkovits RS, Tang J, Baker T. Three-dimensional reconstruction of icosahedral particles from single micrographs in real time at the microscope. J Struct Biol. 2013 Sep; 183(3):329-341. PMID: 23891839; PMCID: PMC3831522.
      17. Gurda BL, DiMattia MA, Miller EB, Bennett A, McKenna R, Weichert WS, Nelson CD, Chen WJ, Muzyczka N, Olson NH, Sinkovits RS, Chiorini JA, Zolotutkhin S, Kozyreva OG, Samulski RJ, Baker T, Parrish CR, Agbandje-McKenna M. Capsid antibodies to different adeno-associated virus serotypes bind common regions. J Virol. 2013 Aug; 87(16):9111-24. PMID: 23760240; PMCID: PMC3754064.
      18. Parent KN, Takagi Y, Cardone G, Olson NH, Ericsson M, Yang M, Lee Y, Asara JM, Fichorova RN, Baker T, Nibert ML. Structure of a protozoan virus from the human genitourinary parasite Trichomonas vaginalis. MBio. 2013 Apr 02; 4(2). PMID: 23549915; PMCID: PMC3622925.
      19. Dunn SE, Li H, Cardone G, Nibert ML, Ghabrial SA, Baker T. Three-dimensional structure of victorivirus HvV190S suggests coat proteins in most totiviruses share a conserved core. PLoS Pathog. 2013 Mar; 9(3):e1003225. PMID: 23516364; PMCID: PMC3597494.
      20. Wang X, Xu F, Liu J, Gao B, Liu Y, Zhai Y, Ma J, Zhang K, Baker T, Schulten K, Zheng D, Pang H, Sun F. Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography. PLoS Pathog. 2013 Jan; 9(1):e1003132. PMID: 23341770; PMCID: PMC3547835.
      21. Ghabrial SA, Dunn SE, Li H, Xie J, Baker T. Viruses of Helminthosporium (Cochlioblus) victoriae. Adv Virus Res. 2013; 86:289-325. PMID: 23498911.
        View in: PubMed
      22. Nibert ML, Tang J, Xie J, Collier AM, Ghabrial SA, Baker T, Tao YJ. 3D structures of fungal partitiviruses. Adv Virus Res. 2013; 86:59-85. PMID: 23498903.
        View in: PubMed
      23. Gurda BL, Raupp C, Popa-Wagner R, Naumer M, Olson NH, Ng R, McKenna R, Baker T, Kleinschmidt JA, Agbandje-McKenna M. Mapping a neutralizing epitope onto the capsid of adeno-associated virus serotype 8. J Virol. 2012 Aug; 86(15):7739-51. PMID: 22593150; PMCID: PMC3421660.
      24. Parent KN, Deedas CT, Egelman EH, Casjens SR, Baker T, Teschke CM. Stepwise molecular display utilizing icosahedral and helical complexes of phage coat and decoration proteins in the development of robust nanoscale display vehicles. Biomaterials. 2012 Aug; 33(22):5628-37. PMID: 22575828; PMCID: PMC3358469.
      25. DiMattia MA, Nam HJ, Van Vliet K, Mitchell M, Bennett A, Gurda BL, McKenna R, Olson NH, Sinkovits RS, Potter M, Byrne BJ, Aslanidi G, Zolotukhin S, Muzyczka N, Baker T, Agbandje-McKenna M. Structural insight into the unique properties of adeno-associated virus serotype 9. J Virol. 2012 Jun; 86(12):6947-58. PMID: 22496238; PMCID: PMC3393551.
      26. Brodin JD, Ambroggio XI, Tang C, Parent KN, Baker T, Tezcan FA. Metal-directed, chemically tunable assembly of one-, two- and three-dimensional crystalline protein arrays. Nat Chem. 2012 Mar 04; 4(5):375-82. PMID: 22522257; PMCID: PMC3335442.
      27. Parent KN, Gilcrease EB, Casjens SR, Baker T. Structural evolution of the P22-like phages: comparison of Sf6 and P22 procapsid and virion architectures. Virology. 2012 Jun 05; 427(2):177-88. PMID: 22386055; PMCID: PMC3320033.
      28. Tang J, Jose J, Chipman P, Zhang W, Kuhn RJ, Baker T. Molecular links between the E2 envelope glycoprotein and nucleocapsid core in Sindbis virus. J Mol Biol. 2011 Dec 02; 414(3):442-59. PMID: 22001018; PMCID: PMC3407685.
      29. Dunn SE, Li H, Nibert ML, Ghabrial SA, Baker T. Electron Cryo-Microscopy Studies of Helminthosporium victoriae Virus 190S. Microsc Microanal. 2011 Jul; 17(Suppl 2):134-135. PMID: 25132801.
        View in: PubMed
      30. Yan X, Parent KN, Goodman RP, Tang J, Shou J, Nibert ML, Duncan R, Baker T. Virion structure of baboon reovirus, a fusogenic orthoreovirus that lacks an adhesion fiber. J Virol. 2011 Aug; 85(15):7483-95. PMID: 21593159; PMCID: PMC3147939.
      31. Tang J, Lander GC, Olia AS, Olia A, Li R, Casjens S, Prevelige P, Cingolani G, Baker T, Johnson JE. Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22. Structure. 2011 Apr 13; 19(4):496-502. PMID: 21439834; PMCID: PMC3075339.
      32. Ku TH, Chien MP, Thompson MP, Sinkovits RS, Olson NH, Baker T, Gianneschi NC. Controlling and switching the morphology of micellar nanoparticles with enzymes. J Am Chem Soc. 2011 Jun 08; 133(22):8392-5. PMID: 21462979; PMCID: PMC3756928.
      33. Shen PS, Enderlein D, Nelson CD, Carter WS, Kawano M, Xing L, Swenson RD, Olson NH, Baker T, Cheng RH, Atwood WJ, Johne R, Belnap DM. The structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interactions, and a possible location of the minor capsid protein VP4. Virology. 2011 Mar 01; 411(1):142-52. PMID: 21239031; PMCID: PMC3057058.
      34. Parent KN, Sinkovits RS, Suhanovsky MM, Teschke CM, Egelman EH, Baker T. Cryo-reconstructions of P22 polyheads suggest that phage assembly is nucleated by trimeric interactions among coat proteins. Phys Biol. 2010 Dec 09; 7(4):045004. PMID: 21149969; PMCID: PMC3202341.
      35. Ng R, Govindasamy L, Gurda BL, McKenna R, Kozyreva OG, Samulski RJ, Parent KN, Baker T, Agbandje-McKenna M. Structural characterization of the dual glycan binding adeno-associated virus serotype 6. J Virol. 2010 Dec; 84(24):12945-57. PMID: 20861247; PMCID: PMC3004313.
      36. Suhanovsky MM, Parent KN, Dunn SE, Baker T, Teschke CM. Determinants of bacteriophage P22 polyhead formation: the role of coat protein flexibility in conformational switching. Mol Microbiol. 2010 Sep; 77(6):1568-82. PMID: 20659287; PMCID: PMC2945288.
      37. Tang J, Pan J, Havens WM, Ochoa WF, Guu TS, Ghabrial SA, Nibert ML, Tao YJ, Baker T. Backbone trace of partitivirus capsid protein from electron cryomicroscopy and homology modeling. Biophys J. 2010 Jul 21; 99(2):685-94. PMID: 20643089; PMCID: PMC2905076.
      38. Tang J, Ochoa WF, Li H, Havens WM, Nibert ML, Ghabrial SA, Baker T. Structure of Fusarium poae virus 1 shows conserved and variable elements of partitivirus capsids and evolutionary relationships to picobirnavirus. J Struct Biol. 2010 Dec; 172(3):363-71. PMID: 20599510; PMCID: PMC3664192.
      39. Gurda BL, Parent KN, Bladek H, Sinkovits RS, DiMattia MA, Rence C, Castro A, McKenna R, Olson N, Brown K, Baker T, Agbandje-McKenna M. Human bocavirus capsid structure: insights into the structural repertoire of the parvoviridae. J Virol. 2010 Jun; 84(12):5880-9. PMID: 20375175; PMCID: PMC2876641.
      40. Parent KN, Khayat R, Tu LH, Suhanovsky MM, Cortines JR, Teschke CM, Johnson JE, Baker T. P22 coat protein structures reveal a novel mechanism for capsid maturation: stability without auxiliary proteins or chemical crosslinks. Structure. 2010 Mar 10; 18(3):390-401. PMID: 20223221; PMCID: PMC2951021.
      41. Tang J, Sinkovits RS, Baker T. Three-dimensional asymmetric reconstruction of tailed bacteriophage. Methods Enzymol. 2010; 482:185-210. PMID: 20888962; PMCID: PMC3779122.
      42. Sinkovits RS, Baker T. A tale of two symmetrons: rules for construction of icosahedral capsids from trisymmetrons and pentasymmetrons. J Struct Biol. 2010 Apr; 170(1):109-16. PMID: 19963064; PMCID: PMC3834589.
      43. Tang J, Lee KK, Bothner B, Baker T, Yeager M, Johnson JE. Dynamics and stability in maturation of a T=4 virus. J Mol Biol. 2009 Sep 25; 392(3):803-12. PMID: 19627990; PMCID: PMC2766526.
      44. Cherrier MV, Kostyuchenko VA, Xiao C, Bowman VD, Battisti AJ, Yan X, Chipman PR, Baker T, Van Etten JL, Rossmann MG. An icosahedral algal virus has a complex unique vertex decorated by a spike. Proc Natl Acad Sci U S A. 2009 Jul 07; 106(27):11085-9. PMID: 19541619; PMCID: PMC2708736.
      45. Pan J, Dong L, Lin L, Ochoa WF, Sinkovits RS, Havens WM, Nibert ML, Baker T, Ghabrial SA, Tao YJ. Atomic structure reveals the unique capsid organization of a dsRNA virus. Proc Natl Acad Sci U S A. 2009 Mar 17; 106(11):4225-30. PMID: 19246376; PMCID: PMC2657383.
      46. Levy HC, Bowman VD, Govindasamy L, McKenna R, Nash K, Warrington K, Chen W, Muzyczka N, Yan X, Baker T, Agbandje-McKenna M. Heparin binding induces conformational changes in Adeno-associated virus serotype 2. J Struct Biol. 2009 Mar; 165(3):146-56. PMID: 19121398; PMCID: PMC3694330.
      47. Yan X, Yu Z, Zhang P, Battisti AJ, Holdaway HA, Chipman PR, Bajaj C, Bergoin M, Rossmann MG, Baker T. The capsid proteins of a large, icosahedral dsDNA virus. J Mol Biol. 2009 Jan 30; 385(4):1287-99. PMID: 19027752; PMCID: PMC2911444.
      48. Tang J, Ochoa WF, Sinkovits RS, Poulos BT, Ghabrial SA, Lightner DV, Baker T, Nibert ML. Infectious myonecrosis virus has a totivirus-like, 120-subunit capsid, but with fiber complexes at the fivefold axes. Proc Natl Acad Sci U S A. 2008 Nov 11; 105(45):17526-31. PMID: 18981418; PMCID: PMC2582295.
      49. Tang J, Olson N, Jardine PJ, Grimes S, Anderson DL, Baker T. DNA poised for release in bacteriophage phi29. Structure. 2008 Jun; 16(6):935-43. PMID: 18547525; PMCID: PMC2556148.
      50. Ochoa WF, Havens WM, Sinkovits RS, Nibert ML, Ghabrial SA, Baker T. Partitivirus structure reveals a 120-subunit, helix-rich capsid with distinctive surface arches formed by quasisymmetric coat-protein dimers. Structure. 2008 May; 16(5):776-86. PMID: 18462682; PMCID: PMC2556151.
      51. Yan X, Sinkovits RS, Baker T. AUTO3DEM--an automated and high throughput program for image reconstruction of icosahedral particles. J Struct Biol. 2007 Jan; 157(1):73-82. PMID: 17029842; PMCID: PMC1847775.
      52. Sherman MB, Guenther RH, Tama F, Sit TL, Brooks CL, Mikhailov AM, Orlova EV, Baker T, Lommel SA. Removal of divalent cations induces structural transitions in red clover necrotic mosaic virus, revealing a potential mechanism for RNA release. J Virol. 2006 Nov; 80(21):10395-406. PMID: 16920821; PMCID: PMC1641784.
      53. Yan X, Dryden KA, Tang J, Baker T. Ab initio random model method facilitates 3D reconstruction of icosahedral particles. J Struct Biol. 2007 Jan; 157(1):211-25. PMID: 16979906; PMCID: PMC1919437.
      54. Mukhopadhyay S, Zhang W, Gabler S, Chipman PR, Strauss EG, Strauss JH, Baker T, Kuhn RJ, Rossmann MG. Mapping the structure and function of the E1 and E2 glycoproteins in alphaviruses. Structure. 2006 Jan; 14(1):63-73. PMID: 16407066; PMCID: PMC2757649.
      55. Ji Y, Marinescu DC, Zhang W, Zhang X, Yan X, Baker T. A model-based parallel origin and orientation refinement algorithm for cryoTEM and its application to the study of virus structures. J Struct Biol. 2006 Apr; 154(1):1-19. PMID: 16459100; PMCID: PMC4147871.
      56. Zhang X, Ji Y, Zhang L, Harrison SC, Marinescu DC, Nibert ML, Baker T. Features of reovirus outer capsid protein mu1 revealed by electron cryomicroscopy and image reconstruction of the virion at 7.0 Angstrom resolution. Structure. 2005 Oct; 13(10):1545-57. PMID: 16216585; PMCID: PMC4126556.
      57. Zhang X, Tang J, Walker SB, O'Hara D, Nibert ML, Duncan R, Baker T. Structure of avian orthoreovirus virion by electron cryomicroscopy and image reconstruction. Virology. 2005 Dec 05; 343(1):25-35. PMID: 16153672; PMCID: PMC4152769.
      58. Yan X, Chipman PR, Castberg T, Bratbak G, Baker T. The marine algal virus PpV01 has an icosahedral capsid with T=219 quasisymmetry. J Virol. 2005 Jul; 79(14):9236-43. PMID: 15994818; PMCID: PMC1168743.
      59. Padron E, Bowman V, Kaludov N, Govindasamy L, Levy H, Nick P, McKenna R, Muzyczka N, Chiorini JA, Baker T, Agbandje-McKenna M. Structure of adeno-associated virus type 4. J Virol. 2005 Apr; 79(8):5047-58. PMID: 15795290; PMCID: PMC1069529.
      60. Zhang W, Heil M, Kuhn RJ, Baker T. Heparin binding sites on Ross River virus revealed by electron cryo-microscopy. Virology. 2005 Feb 20; 332(2):511-8. PMID: 15680416; PMCID: PMC4152768.
      61. Zhang Y, Zhang W, Ogata S, Clements D, Strauss JH, Baker T, Kuhn RJ, Rossmann MG. Conformational changes of the flavivirus E glycoprotein. Structure. 2004 Sep; 12(9):1607-18. PMID: 15341726; PMCID: PMC4152830.
      62. Odegard AL, Chandran K, Zhang X, Parker JS, Baker T, Nibert ML. Putative autocleavage of outer capsid protein micro1, allowing release of myristoylated peptide micro1N during particle uncoating, is critical for cell entry by reovirus. J Virol. 2004 Aug; 78(16):8732-45. PMID: 15280481; PMCID: PMC479062.
      63. Kong Y, Zhang X, Baker T, Ma J. A Structural-informatics approach for tracing beta-sheets: building pseudo-C(alpha) traces for beta-strands in intermediate-resolution density maps. J Mol Biol. 2004 May 21; 339(1):117-30. PMID: 15123425; PMCID: PMC4148645.
      64. Walters RW, Agbandje-McKenna M, Bowman VD, Moninger TO, Olson NH, Seiler M, Chiorini JA, Baker T, Zabner J. Structure of adeno-associated virus serotype 5. J Virol. 2004 Apr; 78(7):3361-71. PMID: 15016858; PMCID: PMC371067.
      65. Singh V, Marinescu DC, Baker T. Image segmentation for automatic particle identification in electron micrographs based on hidden Markov random field models and expectation maximization. J Struct Biol. 2004 Jan-Feb; 145(1-2):123-41. PMID: 15065680; PMCID: PMC4167639.
      66. Zhang X, Walker SB, Chipman PR, Nibert ML, Baker T. Reovirus polymerase lambda 3 localized by cryo-electron microscopy of virions at a resolution of 7.6 A. Nat Struct Biol. 2003 Dec; 10(12):1011-8. PMID: 14608373; PMCID: PMC4152824.
      67. Zhang W, Chipman PR, Corver J, Johnson PR, Zhang Y, Mukhopadhyay S, Baker T, Strauss JH, Rossmann MG, Kuhn RJ. Visualization of membrane protein domains by cryo-electron microscopy of dengue virus. Nat Struct Biol. 2003 Nov; 10(11):907-12. PMID: 14528291; PMCID: PMC4148076.
      68. Zhang Y, Corver J, Chipman PR, Zhang W, Pletnev SV, Sedlak D, Baker T, Strauss JH, Kuhn RJ, Rossmann MG. Structures of immature flavivirus particles. EMBO J. 2003 Jun 02; 22(11):2604-13. PMID: 12773377; PMCID: PMC156766.
      69. Nibert ML, Baker T. CPV, a stable and symmetrical machine for mRNA synthesis. Structure. 2003 Jun; 11(6):605-7. PMID: 12791245.
        View in: PubMed
      70. Willits D, Zhao X, Olson N, Baker T, Zlotnick A, Johnson JE, Douglas T, Young MJ. Effects of the cowpea chlorotic mottle bromovirus beta-hexamer structure on virion assembly. Virology. 2003 Feb 15; 306(2):280-8. PMID: 12642101; PMCID: PMC4191912.
      71. Bernal RA, Hafenstein S, Olson NH, Bowman VD, Chipman PR, Baker T, Fane BA, Rossmann MG. Structural studies of bacteriophage alpha3 assembly. J Mol Biol. 2003 Jan 03; 325(1):11-24. PMID: 12473449; PMCID: PMC4130226.
      72. Kim J, Zhang X, Centonze VE, Bowman VD, Noble S, Baker T, Nibert ML. The hydrophilic amino-terminal arm of reovirus core shell protein lambda1 is dispensable for particle assembly. J Virol. 2002 Dec; 76(23):12211-22. PMID: 12414960; PMCID: PMC136864.
      73. Bowman VD, Chase ES, Franz AW, Chipman PR, Zhang X, Perry KL, Baker T, Smith TJ. An antibody to the putative aphid recognition site on cucumber mosaic virus recognizes pentons but not hexons. J Virol. 2002 Dec; 76(23):12250-8. PMID: 12414964; PMCID: PMC136911.
      74. Zhang W, Mukhopadhyay S, Pletnev SV, Baker T, Kuhn RJ, Rossmann MG. Placement of the structural proteins in Sindbis virus. J Virol. 2002 Nov; 76(22):11645-58. PMID: 12388725; PMCID: PMC136788.
      75. Nandhagopal N, Simpson AA, Gurnon JR, Yan X, Baker T, Graves MV, Van Etten JL, Rossmann MG. The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus. Proc Natl Acad Sci U S A. 2002 Nov 12; 99(23):14758-63. PMID: 12411581; PMCID: PMC137492.
      76. Guasch A, Pous J, Ibarra B, Gomis-Rüth FX, Valpuesta JM, Sousa N, Carrascosa JL, Coll M, Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, Morais MC, Grimes S, Anderson DL, Baker T, Rossmann MG. Note to the Paper by Guasch et al. (2002) Detailed Architecture of a DNA Translocating Machine: The High-resolution Structure of the Bacteriophage ?29 Connector Particle. J Mol Biol. 2002 Aug 09; 321(2):379-380. PMID: 25308998.
        View in: PubMed
      77. He Y, Lin F, Chipman PR, Bator CM, Baker T, Shoham M, Kuhn RJ, Medof ME, Rossmann MG. Structure of decay-accelerating factor bound to echovirus 7: a virus-receptor complex. Proc Natl Acad Sci U S A. 2002 Aug 06; 99(16):10325-9. PMID: 12119400; PMCID: PMC124913.
      78. Zhang W, Fisher BR, Olson NH, Strauss JH, Kuhn RJ, Baker T. Aura virus structure suggests that the T=4 organization is a fundamental property of viral structural proteins. J Virol. 2002 Jul; 76(14):7239-46. PMID: 12072523; PMCID: PMC136343.
      79. Luongo CL, Zhang X, Walker SB, Chen Y, Broering TJ, Farsetta DL, Bowman VD, Baker T, Nibert ML. Loss of activities for mRNA synthesis accompanies loss of lambda2 spikes from reovirus cores: an effect of lambda2 on lambda1 shell structure. Virology. 2002 Apr 25; 296(1):24-38. PMID: 12036315.
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      80. Kuhn RJ, Zhang W, Rossmann MG, Pletnev SV, Corver J, Lenches E, Jones CT, Mukhopadhyay S, Chipman PR, Strauss EG, Baker T, Strauss JH. Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell. 2002 Mar 08; 108(5):717-25. PMID: 11893341; PMCID: PMC4152842.
      81. Liemann S, Chandran K, Baker T, Nibert ML, Harrison SC. Structure of the reovirus membrane-penetration protein, Mu1, in a complex with is protector protein, Sigma3. Cell. 2002 Jan 25; 108(2):283-95. PMID: 11832217; PMCID: PMC4152834.
      82. He Y, Chipman PR, Howitt J, Bator CM, Whitt MA, Baker T, Kuhn RJ, Anderson CW, Freimuth P, Rossmann MG. Interaction of coxsackievirus B3 with the full length coxsackievirus-adenovirus receptor. Nat Struct Biol. 2001 Oct; 8(10):874-8. PMID: 11573093; PMCID: PMC4152846.
      83. Morais MC, Tao Y, Olson NH, Grimes S, Jardine PJ, Anderson DL, Baker T, Rossmann MG. Cryoelectron-microscopy image reconstruction of symmetry mismatches in bacteriophage phi29. J Struct Biol. 2001 Jul; 135(1):38-46. PMID: 11562164.
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      84. Chandran K, Zhang X, Olson NH, Walker SB, Chappell JD, Dermody TS, Baker T, Nibert ML. Complete in vitro assembly of the reovirus outer capsid produces highly infectious particles suitable for genetic studies of the receptor-binding protein. J Virol. 2001 Jun; 75(11):5335-42. PMID: 11333914; PMCID: PMC114938.
      85. Pletnev SV, Zhang W, Mukhopadhyay S, Fisher BR, Hernandez R, Brown DT, Baker T, Rossmann MG, Kuhn RJ. Locations of carbohydrate sites on alphavirus glycoproteins show that E1 forms an icosahedral scaffold. Cell. 2001 Apr 06; 105(1):127-136. PMID: 11301008; PMCID: PMC4140091.
      86. Xiao C, Bator CM, Bowman VD, Rieder E, He Y, Hébert B, Bella J, Baker T, Wimmer E, Kuhn RJ, Rossmann MG. Interaction of coxsackievirus A21 with its cellular receptor, ICAM-1. J Virol. 2001 Mar; 75(5):2444-51. PMID: 11160747; PMCID: PMC114827.
      87. Olson NH, Gingery M, Eiserling FA, Baker T. The structure of isometric capsids of bacteriophage T4. Virology. 2001 Jan 20; 279(2):385-91. PMID: 11162794.
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      88. Zhang W, Olson NH, Baker T, Faulkner L, Agbandje-McKenna M, Boulton MI, Davies JW, McKenna R. Structure of the Maize streak virus geminate particle. Virology. 2001 Jan 20; 279(2):471-7. PMID: 11162803.
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      89. Rieder E, Gorbalenya AE, Xiao C, He Y, Baker T, Kuhn RJ, Rossmann MG, Wimmer E. Will the polio niche remain vacant? Dev Biol (Basel). 2001; 105:111-22; discussion 149-50. PMID: 11763320.
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      90. Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, Morais MC, Grimes S, Anderson DL, Baker T, Rossmann MG. Structure of the bacteriophage phi29 DNA packaging motor. Nature. 2000 Dec 07; 408(6813):745-50. PMID: 11130079; PMCID: PMC4151180.
      91. Rossmann MG, Bella J, Kolatkar PR, He Y, Wimmer E, Kuhn RJ, Baker T. Cell recognition and entry by rhino- and enteroviruses. Virology. 2000 Apr 10; 269(2):239-47. PMID: 10753702.
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      92. Yan X, Olson NH, Van Etten JL, Bergoin M, Rossmann MG, Baker T. Structure and assembly of large lipid-containing dsDNA viruses. Nat Struct Biol. 2000 Feb; 7(2):101-3. PMID: 10655609; PMCID: PMC4167659.
      93. He Y, Bowman VD, Mueller S, Bator CM, Bella J, Peng X, Baker T, Wimmer E, Kuhn RJ, Rossmann MG. Interaction of the poliovirus receptor with poliovirus. Proc Natl Acad Sci U S A. 2000 Jan 04; 97(1):79-84. PMID: 10618374; PMCID: PMC26619.
      94. Baker T, Olson NH, Fuller SD. Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiol Mol Biol Rev. 1999 Dec; 63(4):862-922, table of contents. PMID: 10585969; PMCID: PMC98980.
      95. Krol MA, Olson NH, Tate J, Johnson JE, Baker T, Ahlquist P. RNA-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein. Proc Natl Acad Sci U S A. 1999 Nov 23; 96(24):13650-5. PMID: 10570127; PMCID: PMC24119.
      96. Kolatkar PR, Bella J, Olson NH, Bator CM, Baker T, Rossmann MG. Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor. EMBO J. 1999 Nov 15; 18(22):6249-59. PMID: 10562537; PMCID: PMC1171688.
      97. McKenna R, Olson NH, Chipman PR, Baker T, Booth TF, Christensen J, Aasted B, Fox JM, Bloom ME, Wolfinbarger JB, Agbandje-McKenna M. Three-dimensional structure of Aleutian mink disease parvovirus: implications for disease pathogenicity. J Virol. 1999 Aug; 73(8):6882-91. PMID: 10400786; PMCID: PMC112773.
      98. Chandran K, Walker SB, Chen Y, Contreras CM, Schiff LA, Baker T, Nibert ML. In vitro recoating of reovirus cores with baculovirus-expressed outer-capsid proteins mu1 and sigma3. J Virol. 1999 May; 73(5):3941-50. PMID: 10196289; PMCID: PMC104172.
      99. Belnap DM, Kumar A, Folk JT, Smith TJ, Baker T. Low-resolution density maps from atomic models: how stepping "back" can be a step "forward". J Struct Biol. 1999 Apr-May; 125(2-3):166-75. PMID: 10222272.
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      100. Jané-Valbuena J, Nibert ML, Spencer SM, Walker SB, Baker T, Chen Y, Centonze VE, Schiff LA. Reovirus virion-like particles obtained by recoating infectious subvirion particles with baculovirus-expressed sigma3 protein: an approach for analyzing sigma3 functions during virus entry. J Virol. 1999 Apr; 73(4):2963-73. PMID: 10074146; PMCID: PMC104056.
      101. Sosinsky GE, Baker T, Hand G, Ellisman MH. The Electron Microscopy Outreach Program: A Web-based resource for research and education. J Struct Biol. 1999 Apr-May; 125(2-3):246-52. PMID: 10222281.
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      102. Tao Y, Olson NH, Xu W, Anderson DL, Rossmann MG, Baker T. Assembly of a tailed bacterial virus and its genome release studied in three dimensions. Cell. 1998 Oct 30; 95(3):431-7. PMID: 9814712; PMCID: PMC4167676.
      103. Che Z, Olson NH, Leippe D, Lee WM, Mosser AG, Rueckert RR, Baker T, Smith TJ. Antibody-mediated neutralization of human rhinovirus 14 explored by means of cryoelectron microscopy and X-ray crystallography of virus-Fab complexes. J Virol. 1998 Jun; 72(6):4610-22. PMID: 9573224; PMCID: PMC109976.
      104. Dryden KA, Farsetta DL, Wang G, Keegan JM, Fields BN, Baker T, Nibert ML. Internal/structures containing transcriptase-related proteins in top component particles of mammalian orthoreovirus. Virology. 1998 May 25; 245(1):33-46. PMID: 9614865.
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      105. Fox JM, Wang G, Speir JA, Olson NH, Johnson JE, Baker T, Young MJ. Comparison of the native CCMV virion with in vitro assembled CCMV virions by cryoelectron microscopy and image reconstruction. Virology. 1998 Apr 25; 244(1):212-8. PMID: 9581792.
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      106. Chipman PR, Agbandje-McKenna M, Renaudin J, Baker T, McKenna R. Structural analysis of the Spiroplasma virus, SpV4: implications for evolutionary variation to obtain host diversity among the Microviridae. Structure. 1998 Feb 15; 6(2):135-45. PMID: 9519405; PMCID: PMC4167680.
      107. Boier Martin IM, Marinescu DC, Lynch RE, Baker T. Identification of spherical virus particles in digitized images of entire electron micrographs. J Struct Biol. 1997 Nov; 120(2):146-57. PMID: 9417979.
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      108. Luongo CL, Dryden KA, Farsetta DL, Margraf RL, Severson TF, Olson NH, Fields BN, Baker T, Nibert ML. Localization of a C-terminal region of lambda2 protein in reovirus cores. J Virol. 1997 Oct; 71(10):8035-40. PMID: 9311901; PMCID: PMC192168.
      109. Spencer SM, Sgro JY, Dryden KA, Baker T, Nibert ML. IRIS explorer software for radial-depth cueing reovirus particles and other macromolecular structures determined by cryoelectron microscopy and image reconstruction. J Struct Biol. 1997 Oct; 120(1):11-21. PMID: 9361260.
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      110. Kumar A, Reddy VS, Yusibov V, Chipman PR, Hata Y, Fita I, Fukuyama K, Rossmann MG, Loesch-Fries LS, Baker T, Johnson JE. The structure of alfalfa mosaic virus capsid protein assembled as a T=1 icosahedral particle at 4.0-A resolution. J Virol. 1997 Oct; 71(10):7911-6. PMID: 9311881; PMCID: PMC192148.
      111. Belnap DM, Olson NH, Baker T. A method for establishing the handedness of biological macromolecules. J Struct Biol. 1997 Oct; 120(1):44-51. PMID: 9356290.
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      112. Wikoff WR, Tsai CJ, Wang G, Baker T, Johnson JE. The structure of cucumber mosaic virus: cryoelectron microscopy, X-ray crystallography, and sequence analysis. Virology. 1997 May 26; 232(1):91-7. PMID: 9185592.
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      113. Baker T, Johnson JE. Low resolution meets high: towards a resolution continuum from cells to atoms. Curr Opin Struct Biol. 1996 Oct; 6(5):585-94. PMID: 8913679.
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      114. Smith TJ, Chase ES, Schmidt TJ, Olson NH, Baker T. Neutralizing antibody to human rhinovirus 14 penetrates the receptor-binding canyon. Nature. 1996 Sep 26; 383(6598):350-4. PMID: 8848050; PMCID: PMC4167671.
      115. Chipman PR, Agbandje-McKenna M, Kajigaya S, Brown KE, Young NS, Baker T, Rossmann MG. Cryo-electron microscopy studies of empty capsids of human parvovirus B19 complexed with its cellular receptor. Proc Natl Acad Sci U S A. 1996 Jul 23; 93(15):7502-6. PMID: 8755503; PMCID: PMC38774.
      116. Belnap DM, Olson NH, Cladel NM, Newcomb WW, Brown JC, Kreider JW, Christensen ND, Baker T. Conserved features in papillomavirus and polyomavirus capsids. J Mol Biol. 1996 Jun 07; 259(2):249-63. PMID: 8656427; PMCID: PMC4142696.
      117. Fuller SD, Butcher SJ, Cheng RH, Baker T. Three-dimensional reconstruction of icosahedral particles--the uncommon line. J Struct Biol. 1996 Jan-Feb; 116(1):48-55. PMID: 8742722.
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      118. Baker T, Cheng RH. A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy. J Struct Biol. 1996 Jan-Feb; 116(1):120-30. PMID: 8742733.
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      119. Smith TJ, Cheng RH, Olson NH, Peterson P, Chase E, Kuhn RJ, Baker T. Putative receptor binding sites on alphaviruses as visualized by cryoelectron microscopy. Proc Natl Acad Sci U S A. 1995 Nov 07; 92(23):10648-52. PMID: 7479858; PMCID: PMC40669.
      120. Zhao X, Fox JM, Olson NH, Baker T, Young MJ. In vitro assembly of cowpea chlorotic mottle virus from coat protein expressed in Escherichia coli and in vitro-transcribed viral cDNA. Virology. 1995 Mar 10; 207(2):486-94. PMID: 7886952.
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      121. Cheng RH, Kuhn RJ, Olson NH, Rossmann MG, Choi HK, Smith TJ, Baker T. Nucleocapsid and glycoprotein organization in an enveloped virus. Cell. 1995 Feb 24; 80(4):621-30. PMID: 7867069; PMCID: PMC4167723.
      122. Speir JA, Munshi S, Wang G, Baker T, Johnson JE. Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy. Structure. 1995 Jan 15; 3(1):63-78. PMID: 7743132; PMCID: PMC4191737.
      123. Cheng RH, Caston JR, Wang GJ, Gu F, Smith TJ, Baker T, Bozarth RF, Trus BL, Cheng N, Wickner RB. Fungal virus capsids, cytoplasmic compartments for the replication of double-stranded RNA, formed as icosahedral shells of asymmetric Gag dimers. J Mol Biol. 1994 Dec 02; 244(3):255-8. PMID: 7966336.
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      124. Porta C, Wang G, Cheng H, Chen Z, Baker T, Johnson JE. Direct imaging of interactions between an icosahedral virus and conjugate F(ab) fragments by cryoelectron microscopy and X-ray crystallography. Virology. 1994 Nov 01; 204(2):777-88. PMID: 7941346.
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      125. Wikoff WR, Wang G, Parrish CR, Cheng RH, Strassheim ML, Baker T, Rossmann MG. The structure of a neutralized virus: canine parvovirus complexed with neutralizing antibody fragment. Structure. 1994 Jul 15; 2(7):595-607. PMID: 7522904; PMCID: PMC4167666.
      126. Liu H, Smith TJ, Lee WM, Mosser AG, Rueckert RR, Olson NH, Cheng RH, Baker T. Structure determination of an Fab fragment that neutralizes human rhinovirus 14 and analysis of the Fab-virus complex. J Mol Biol. 1994 Jul 08; 240(2):127-37. PMID: 8027997.
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      127. Hagensee ME, Olson NH, Baker T, Galloway DA. Three-dimensional structure of vaccinia virus-produced human papillomavirus type 1 capsids. J Virol. 1994 Jul; 68(7):4503-5. PMID: 8207824; PMCID: PMC236376.
      128. Yeager M, Berriman JA, Baker T, Bellamy AR. Three-dimensional structure of the rotavirus haemagglutinin VP4 by cryo-electron microscopy and difference map analysis. EMBO J. 1994 Mar 01; 13(5):1011-8. PMID: 8131735; PMCID: PMC394908.
      129. Cramer WA, Martinez SE, Huang D, Tae GS, Everly RM, Heymann JB, Cheng RH, Baker T, Smith JL. Structural aspects of the cytochrome b6f complex; structure of the lumen-side domain of cytochrome f. J Bioenerg Biomembr. 1994 Feb; 26(1):31-47. PMID: 8027021; PMCID: PMC4167668.
      130. Johnson JE, Munshi S, Liljas L, Agrawal D, Olson NH, Reddy V, Fisher A, McKinney B, Schmidt T, Baker T. Comparative studies of T = 3 and T = 4 icosahedral RNA insect viruses. Arch Virol Suppl. 1994; 9:497-512. PMID: 8032278; PMCID: PMC4167711.
      131. Rossmann MG, Olson NH, Kolatkar PR, Oliveira MA, Cheng RH, Greve JM, McClelland A, Baker T. Crystallographic and cryo EM analysis of virion-receptor interactions. Arch Virol Suppl. 1994; 9:531-41. PMID: 7913361; PMCID: PMC4140090.
      132. Dryden KA, Wang G, Yeager M, Nibert ML, Coombs KM, Furlong DB, Fields BN, Baker T. Early steps in reovirus infection are associated with dramatic changes in supramolecular structure and protein conformation: analysis of virions and subviral particles by cryoelectron microscopy and image reconstruction. J Cell Biol. 1993 Sep; 122(5):1023-41. PMID: 8394844; PMCID: PMC2119633.
      133. Smith TJ, Olson NH, Cheng RH, Chase ES, Baker T. Structure of a human rhinovirus-bivalently bound antibody complex: implications for viral neutralization and antibody flexibility. Proc Natl Acad Sci U S A. 1993 Aug 01; 90(15):7015-8. PMID: 8394005; PMCID: PMC47066.
      134. Smith TJ, Olson NH, Cheng RH, Liu H, Chase ES, Lee WM, Leippe DM, Mosser AG, Rueckert RR, Baker T. Structure of human rhinovirus complexed with Fab fragments from a neutralizing antibody. J Virol. 1993 Mar; 67(3):1148-58. PMID: 7679742; PMCID: PMC237479.
      135. Speir JA, Munshi S, Baker T, Johnson JE. Preliminary X-ray data analysis of crystalline cowpea chlorotic mottle virus. Virology. 1993 Mar; 193(1):234-41. PMID: 8438568.
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      136. Belnap DM, Grochulski WD, Olson NH, Baker T. Use of radial density plots to calibrate image magnification for frozen-hydrated specimens. Ultramicroscopy. 1993 Mar; 48(3):347-58. PMID: 8475599; PMCID: PMC4167663.
      137. Olson NH, Kolatkar PR, Oliveira MA, Cheng RH, Greve JM, McClelland A, Baker T, Rossmann MG. Structure of a human rhinovirus complexed with its receptor molecule. Proc Natl Acad Sci U S A. 1993 Jan 15; 90(2):507-11. PMID: 8093643; PMCID: PMC45692.
      138. Stoops JK, Baker T, Schroeter JP, Kolodziej SJ, Niu XD, Reed LJ. Three-dimensional structure of the truncated core of the Saccharomyces cerevisiae pyruvate dehydrogenase complex determined from negative stain and cryoelectron microscopy images. J Biol Chem. 1992 Dec 05; 267(34):24769-75. PMID: 1280269; PMCID: PMC4167662.
      139. Olson NH, Baker T, Willingmann P, Incardona NL. The three-dimensional structure of frozen-hydrated bacteriophage phi X174. J Struct Biol. 1992 Mar-Apr; 108(2):168-75. PMID: 1486007; PMCID: PMC4140079.
      140. Cheng RH, Olson NH, Baker T. Cauliflower mosaic virus: a 420 subunit (T = 7), multilayer structure. Virology. 1992 Feb; 186(2):655-68. PMID: 1733107; PMCID: PMC4167691.
      141. Wang GJ, Porta C, Chen ZG, Baker T, Johnson JE. Identification of a Fab interaction footprint site on an icosahedral virus by cryoelectron microscopy and X-ray crystallography. Nature. 1992 Jan 16; 355(6357):275-8. PMID: 1731227; PMCID: PMC4152847.
      142. McKenna R, Xia D, Willingmann P, Ilag LL, Krishnaswamy S, Rossmann MG, Olson NH, Baker T, Incardona NL. Atomic structure of single-stranded DNA bacteriophage phi X174 and its functional implications. Nature. 1992 Jan 09; 355(6356):137-43. PMID: 1370343; PMCID: PMC4167681.
      143. Baker T, Newcomb WW, Olson NH, Cowsert LM, Olson C, Brown JC. Structures of bovine and human papillomaviruses. Analysis by cryoelectron microscopy and three-dimensional image reconstruction. Biophys J. 1991 Dec; 60(6):1445-56. PMID: 1663794; PMCID: PMC1260204.
      144. Guo PX, Erickson S, Xu W, Olson N, Baker T, Anderson D. Regulation of the phage phi 29 prohead shape and size by the portal vertex. Virology. 1991 Jul; 183(1):366-73. PMID: 1905079; PMCID: PMC4167689.
      145. Stoops JK, Schroeter JP, Bretaudiere JP, Olson NH, Baker T, Strickland DK. Structural studies of human alpha 2-macroglobulin: concordance between projected views obtained by negative-stain and cryoelectron microscopy. J Struct Biol. 1991 Apr; 106(2):172-8. PMID: 1725125; PMCID: PMC4167667.
      146. Booy FP, Newcomb WW, Trus BL, Brown JC, Baker T, Steven AC. Liquid-crystalline, phage-like packing of encapsidated DNA in herpes simplex virus. Cell. 1991 Mar 08; 64(5):1007-15. PMID: 1848156; PMCID: PMC4140082.
      147. Sosinsky GE, Baker T, Caspar DL, Goodenough DA. Correlation analysis of gap junction lattice images. Biophys J. 1990 Nov; 58(5):1213-26. PMID: 2291941; PMCID: PMC1281066.
      148. Olson NH, Baker T, Johnson JE, Hendry DA. The three-dimensional structure of frozen-hydrated Nudaurelia capensis beta virus, a T = 4 insect virus. J Struct Biol. 1990 Oct-Dec; 105(1-3):111-22. PMID: 1712620; PMCID: PMC4167673.
      149. Yeager M, Dryden KA, Olson NH, Greenberg HB, Baker T. Three-dimensional structure of rhesus rotavirus by cryoelectron microscopy and image reconstruction. J Cell Biol. 1990 Jun; 110(6):2133-44. PMID: 2161857; PMCID: PMC2116141.
      150. Baker T, Newcomb WW, Booy FP, Brown JC, Steven AC. Three-dimensional structures of maturable and abortive capsids of equine herpesvirus 1 from cryoelectron microscopy. J Virol. 1990 Feb; 64(2):563-73. PMID: 2153224; PMCID: PMC249145.
      151. Olson NH, Baker T. Magnification calibration and the determination of spherical virus diameters using cryo-microscopy. Ultramicroscopy. 1989 Jul-Aug; 30(3):281-97. PMID: 2800042; PMCID: PMC4167718.
      152. Baker T, Drak J, Bina M. The capsid of small papova viruses contains 72 pentameric capsomeres: direct evidence from cryo-electron-microscopy of simian virus 40. Biophys J. 1989 Feb; 55(2):243-53. PMID: 2540847; PMCID: PMC1330465.
      153. Baker T, Drak J, Bina M. Reconstruction of the three-dimensional structure of simian virus 40 and visualization of the chromatin core. Proc Natl Acad Sci U S A. 1988 Jan; 85(2):422-6. PMID: 2829185; PMCID: PMC279561.
      154. Baker T, Sosinsky GE, Caspar DL, Gall C, Goodenough DA. Gap junction structures. VII. Analysis of connexon images obtained with cationic and anionic negative stains. J Mol Biol. 1985 Jul 05; 184(1):81-98. PMID: 2411939; PMCID: PMC4147872.
      155. Makowski L, Caspar DL, Phillips WC, Baker T, Goodenough DA. Gap junction structures. VI. Variation and conservation in connexon conformation and packing. Biophys J. 1984 Jan; 45(1):208-18. PMID: 6324904; PMCID: PMC1435272.
      156. Rayment I, Baker T, Caspar DL. A Description of the Techniques and Application of Molecular Replacement Used to Determine the Structure of Polyoma Virus Capsid at 22.5 Å Resolution. Acta Crystallogr B. 1983 Aug; 39(4):505-516. PMID: 25242833.
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      157. Rayment I, Baker T, Caspar DL, Murakami WT. Polyoma virus capsid structure at 22.5 A resolution. Nature. 1982 Jan 14; 295(5845):110-5. PMID: 6276752; PMCID: PMC4144041.
      158. Baker T, Amos LA. Structure of the tubulin dimer in zinc-induced sheets. J Mol Biol. 1978 Jul 25; 123(1):89-106. PMID: 682196.
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      159. Baker T, Eisenberg D, Eiserling FA, Weissman L. The structure of form I crystals of D-ribulose-1,5-diphosphate carboxylase. J Mol Biol. 1975 Feb 05; 91(4):391-9. PMID: 1152035; PMCID: PMC4167682.
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