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    Ryan Shultzaberger

    TitleAssistant Project Scientist
    SchoolUniversity of California, San Diego
    DepartmentKavli Institute for Brain And Mind
    Address9500 Gilman Drive #0126
    CA La Jolla 92093
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Rubin BE, Wetmore KM, Price MN, Diamond S, Shultzaberger R, Lowe LC, Curtin G, Arkin AP, Deutschbauer A, Golden SS. The essential gene set of a photosynthetic organism. Proc Natl Acad Sci U S A. 2015 Dec 1; 112(48):E6634-43. PMID: 26508635.
        View in: PubMed
      2. Shultzaberger R, Paddock ML, Katsuki T, Greenspan RJ, Golden SS. High-throughput and quantitative approaches for measuring circadian rhythms in cyanobacteria using bioluminescence. Methods Enzymol. 2015; 551:53-72. PMID: 25662451.
        View in: PubMed
      3. Shultzaberger R, Boyd JS, Katsuki T, Golden SS, Greenspan RJ. Single mutations in sasA enable a simpler ?cikA gene network architecture with equivalent circadian properties. Proc Natl Acad Sci U S A. 2014 Nov 25; 111(47):E5069-75. PMID: 25385627.
        View in: PubMed
      4. Shultzaberger R, Maerkl SJ, Kirsch JF, Eisen MB. Probing the informational and regulatory plasticity of a transcription factor DNA-binding domain. PLoS Genet. 2012; 8(3):e1002614. PMID: 22496663; PMCID: PMC3315485.
      5. Munchel SE, Shultzaberger R, Takizawa N, Weis K. Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay. Mol Biol Cell. 2011 Aug 1; 22(15):2787-95. PMID: 21680716; PMCID: PMC3145553.
      6. Shultzaberger R, Malashock DS, Kirsch JF, Eisen MB. The fitness landscapes of cis-acting binding sites in different promoter and environmental contexts. PLoS Genet. 2010 Jul; 6(7):e1001042. PMID: 20686658; PMCID: PMC2912393.
      7. Shultzaberger R, Chiang DY, Moses AM, Eisen MB. Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis. PLoS One. 2007; 2(11):e1199. PMID: 18030333; PMCID: PMC2077805.
      8. Chen Z, Lewis KA, Shultzaberger R, Lyakhov IG, Zheng M, Doan B, Storz G, Schneider TD. Discovery of Fur binding site clusters in Escherichia coli by information theory models. Nucleic Acids Res. 2007; 35(20):6762-77. PMID: 17921503; PMCID: PMC2189734.
      9. Shultzaberger R, Roberts LR, Lyakhov IG, Sidorov IA, Stephen AG, Fisher RJ, Schneider TD. Correlation between binding rate constants and individual information of E. coli Fis binding sites. Nucleic Acids Res. 2007; 35(16):5275-83. PMID: 17617646; PMCID: PMC2018646.
      10. Shultzaberger R, Chen Z, Lewis KA, Schneider TD. Anatomy of Escherichia coli sigma70 promoters. Nucleic Acids Res. 2007; 35(3):771-88. PMID: 17189297; PMCID: PMC1807945.
      11. Chiang DY, Nix DA, Shultzaberger R, Gasch AP, Eisen MB. Flexible promoter architecture requirements for coactivator recruitment. BMC Mol Biol. 2006; 7:16. PMID: 16646957; PMCID: PMC1488866.
      12. Corbett KD, Shultzaberger R, Berger JM. The C-terminal domain of DNA gyrase A adopts a DNA-bending beta-pinwheel fold. Proc Natl Acad Sci U S A. 2004 May 11; 101(19):7293-8. PMID: 15123801.
        View in: PubMed
      13. Shultzaberger R, Bucheimer RE, Rudd KE, Schneider TD. Anatomy of Escherichia coli ribosome binding sites. J Mol Biol. 2001 Oct 12; 313(1):215-28. PMID: 11601857.
        View in: PubMed
      14. Shultzaberger R, Schneider TD. Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepancies between natural selection and SELEX. Nucleic Acids Res. 1999 Feb 1; 27(3):882-7. PMID: 9889287; PMCID: PMC148261.