Rebecca Colman

Title(s)	Assistant Adjunct Professor, Medicine
School	Vc-health Sciences-schools
Address	9500 Gilman Drive # La Jolla CA 92093
ORCID	0000-002-6854-2100
vCard	Download vCard

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

Altmetrics Details

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Contributions of GeneXpert® to TB diagnosis in Myanmar. Int J Tuberc Lung Dis. 2022 09 01; 26(9):875-879. Burger Z, Aung HT, Seifert M, Mar TT, Harris V, Colman RE, Rodwell TC, Aung ST. PMID: 35996278; PMCID: PMC9423018.

View in: PubMed Mentions: Fields:
Pul Pulmonary Medicine
Translation:Humans Cells
The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis. Lancet Microbe. 2022 04; 3(4):e265-e273. Walker TM, Miotto P, Köser CU, Fowler PW, Knaggs J, Iqbal Z, Hunt M, Chindelevitch L, Farhat M, Cirillo DM, Comas I, Posey J, Omar SV, Peto TE, Suresh A, Uplekar S, Laurent S, Colman RE, Nathanson CM, Zignol M, Walker AS, CRyPTIC Consortium, Seq&Treat Consortium, Crook DW, Ismail N, Rodwell TC. PMID: 35373160; PMCID: PMC7612554.

View in: PubMed Mentions: 64 Fields:
Bac Bacteriology Mic Microbiology Par Parasitology Vir Virology
Translation:Cells
Detecting rifampin and isoniazid resistance in Mycobacterium tuberculosis direct from patient sputum using an automated integrated system. J Clin Tuberc Other Mycobact Dis. 2022 May; 27:100304. Colman RE, Hagan C, Chiles P, Seifert M, Catanzaro DG, Kukhtin AV, Norville R, Hauns L, Bueno A, Holmberg RC, Cooney CG, Rodwell TC. PMID: 35252594; PMCID: PMC8891689.

View in: PubMed Mentions: 2
Age and sex distribution of Mycobacterium tuberculosis infection and rifampicin resistance in Myanmar as detected by Xpert MTB/RIF. BMC Infect Dis. 2021 Aug 09; 21(1):781. Seifert M, Aung HT, Besler N, Harris V, Mar TT, Colman RE, Rodwell TC, Aung ST. PMID: 34372793; PMCID: PMC8351356.

View in: PubMed Mentions: 3 Fields:
Com Communicable Diseases
Translation:Humans Cells
Rapid Detection of Extensively Drug-Resistant Tuberculosis in Clinical Samples Using a Novel Tabletop Platform: Protocol for a Prospective Clinical Study. JMIR Res Protoc. 2021 Jul 14; 10(7):e26748. Hillery N, Seifert M, Catanzaro DG, McKinnon S, Colman RE, Chiles PG, Chesov D, Ciobanu N, Hagan C, Crudu V, Catanzaro A, Rodwell TC. PMID: 34259165; PMCID: PMC8319779.

View in: PubMed Mentions: 2
No evidence for enzootic plague within black-tailed prairie dog (Cynomys ludovicianus) populations. Integr Zool. 2021 Nov; 16(6):834-851. Colman RE, Brinkerhoff RJ, Busch JD, Ray C, Doyle A, Sahl JW, Keim P, Collinge SK, Wagner DM. PMID: 33882192; PMCID: PMC9292313.

View in: PubMed Mentions: 4 Fields:
Zoo Zoology
Translation:Animals Cells
Laboratory Evaluation of a Lateral-Flow Cell for Molecular Detection of First-Line and Second-Line Antituberculosis Drug Resistance. J Clin Microbiol. 2020 10 21; 58(11). Catanzaro DG, Colman RE, Linger Y, Georghiou SB, Kukhtin AV, Seifert M, Holmberg RC, Mshaiel H, Chiles P, Hillery N, Cooney CG, Rodwell TC. PMID: 32817085; PMCID: PMC7587100.

View in: PubMed Mentions: 3 Fields:
Mic Microbiology
Translation:Humans Cells
Application of Targeted Next-Generation Sequencing Assay on a Portable Sequencing Platform for Culture-Free Detection of Drug-Resistant Tuberculosis from Clinical Samples. J Clin Microbiol. 2020 09 22; 58(10). Cabibbe AM, Spitaleri A, Battaglia S, Colman RE, Suresh A, Uplekar S, Rodwell TC, Cirillo DM. PMID: 32727827; PMCID: PMC7512157.

View in: PubMed Mentions: 37 Fields:
Mic Microbiology
Translation:Humans Cells
Review of automated DNA extraction systems for sequencing-based solutions for drug-resistant tuberculosis detection. Diagn Microbiol Infect Dis. 2020 Oct; 98(2):115096. Colman RE, Suresh A, Dolinger DL, Muñoz T, Denkinger CM, Rodwell TC. PMID: 32623232.

View in: PubMed Mentions: 3 Fields:
Com Communicable Diseases Mic Microbiology
Translation:Humans Cells
The effect of sodium thiosulfate on the recovery of Mycobacterium chimaera from heater-cooler unit water samples. J Hosp Infect. 2020 Jun; 105(2):252-257. Mak EEH, Sng LH, Lee BWM, Peh JWL, Colman RE, Seifert M. PMID: 32112827.

View in: PubMed Mentions: Fields:
Com Communicable Diseases Hos Hospitals
Translation:Humans Cells PHPublic Health
Guidance for Studies Evaluating the Accuracy of Rapid Tuberculosis Drug-Susceptibility Tests. J Infect Dis. 2019 10 08; 220(220 Suppl 3):S126-S135. Georghiou SB, Schumacher SG, Rodwell TC, Colman RE, Miotto P, Gilpin C, Ismail N, Rodrigues C, Warren R, Weyer K, Zignol M, Arafah S, Cirillo DM, Denkinger CM. PMID: 31593599.

View in: PubMed Mentions: 7 Fields:
Com Communicable Diseases
Translation:Humans Cells
Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation. PLoS Med. 2019 04; 16(4):e1002794. Colman RE, Mace A, Seifert M, Hetzel J, Mshaiel H, Suresh A, Lemmer D, Engelthaler DM, Catanzaro DG, Young AG, Denkinger CM, Rodwell TC. PMID: 31039166; PMCID: PMC6490892.

View in: PubMed Mentions: 24 Fields:
Med Medicine (General)
Translation:Humans Cells
Mixed Mycobacterium tuberculosis-Strain Infections Are Associated With Poor Treatment Outcomes Among Patients With Newly Diagnosed Tuberculosis, Independent of Pretreatment Heteroresistance. J Infect Dis. 2018 11 05; 218(12):1974-1982. Shin SS, Modongo C, Baik Y, Allender C, Lemmer D, Colman RE, Engelthaler DM, Warren RM, Zetola NM. PMID: 30085153; PMCID: PMC6217728.

View in: PubMed Mentions: 28 Fields:
Com Communicable Diseases
Translation:Humans Cells
Coinfections identified from metagenomic analysis of cervical lymph nodes from tularemia patients. BMC Infect Dis. 2018 07 11; 18(1):319. Birdsell DN, Özsürekci Y, Rawat A, Aycan AE, Mitchell CL, Sahl JW, Johansson A, Colman RE, Schupp JM, Ceyhan M, Keim PS, Wagner DM. PMID: 29996780; PMCID: PMC6042416.

View in: PubMed Mentions: 5 Fields:
Com Communicable Diseases
Translation:Humans Cells
Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model. PLoS Negl Trop Dis. 2017 12; 11(12):e0006077. Mitchell CL, Andrianaivoarimanana V, Colman RE, Busch J, Hornstra-O'Neill H, Keim PS, Wagner DM, Rajerison M, Birdsell DN. PMID: 29227994; PMCID: PMC5739503.

View in: PubMed Mentions: 4 Fields:
Tro Tropical Medicine
Translation:Humans Cells
Cryptic Microheteroresistance Explains Mycobacterium tuberculosis Phenotypic Resistance. Am J Respir Crit Care Med. 2017 11 01; 196(9):1191-1201. Metcalfe JZ, Streicher E, Theron G, Colman RE, Allender C, Lemmer D, Warren R, Engelthaler DM. PMID: 28614668; PMCID: PMC5694839.

View in: PubMed Mentions: 18 Fields:
Cri Critical Care Pul Pulmonary Medicine
Translation:Cells
Mycobacterium tuberculosis Subculture Results in Loss of Potentially Clinically Relevant Heteroresistance. Antimicrob Agents Chemother. 2017 11; 61(11). Metcalfe JZ, Streicher E, Theron G, Colman RE, Penaloza R, Allender C, Lemmer D, Warren RM, Engelthaler DM. PMID: 28893776; PMCID: PMC5655066.

View in: PubMed Mentions: 26 Fields:
Ant Anti-Infective Agents
Translation:Humans Cells
Next-generation sequencing-based user-friendly platforms for drug-resistant tuberculosis diagnosis: A promise for the near future. Int J Mycobacteriol. 2016 Dec; 5 Suppl 1:S27-S28. Dolinger DL, Colman RE, Engelthaler DM, Rodwell TC. PMID: 28043592.

View in: PubMed Mentions: 6 Fields:
Bac Bacteriology Com Communicable Diseases
The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers. mBio. 2016 09 20; 7(5). Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, Hutcheson A, Korlach J, LiPuma JJ, Ladner J, Lovett S, Koroleva G, Palacios G, Limmathurotsakul D, Wuthiekanun V, Wongsuwan G, Currie BJ, Keim P, Wagner DM. PMID: 27651357; PMCID: PMC5030356.

View in: PubMed Mentions: 31 Fields:
Mic Microbiology
Translation:Humans Cells
Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study. J Clin Microbiol. 2016 08; 54(8):2058-67. Colman RE, Anderson J, Lemmer D, Lehmkuhl E, Georghiou SB, Heaton H, Wiggins K, Gillece JD, Schupp JM, Catanzaro DG, Crudu V, Cohen T, Rodwell TC, Engelthaler DM. PMID: 27225403; PMCID: PMC4963505.

View in: PubMed Mentions: 37 Fields:
Mic Microbiology
Translation:Humans Cells
Genetic variation at the MHC DRB1 locus is similar across Gunnison's prairie dog (Cynomys gunnisoni) colonies regardless of plague history. Ecol Evol. 2016 Apr; 6(8):2624-51. Cobble KR, Califf KJ, Stone NE, Shuey MM, Birdsell DN, Colman RE, Schupp JM, Aziz M, Van Andel R, Rocke TE, Wagner DM, Busch JD. PMID: 27066243; PMCID: PMC4798151.

View in: PubMed Mentions: 4
Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei. PLoS One. 2015; 10(11):e0143254. Hall CM, Busch JD, Shippy K, Allender CJ, Kaestli M, Mayo M, Sahl JW, Schupp JM, Colman RE, Keim P, Currie BJ, Wagner DM. PMID: 26600238; PMCID: PMC4658082.

View in: PubMed Mentions: 15 Fields:
Med Medicine (General)Sci Science
Translation:Cells PHPublic Health
Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage. Sci Rep. 2015 Oct 14; 5:15188. Sahl JW, Del Franco M, Pournaras S, Colman RE, Karah N, Dijkshoorn L, Zarrilli R. PMID: 26462752; PMCID: PMC4604477.

View in: PubMed Mentions: 33 Fields:
Sci Science
Translation:Cells
Best practices for evaluating single nucleotide variant calling methods for microbial genomics. Front Genet. 2015; 6:235. Olson ND, Lund SP, Colman RE, Foster JT, Sahl JW, Schupp JM, Keim P, Morrow JB, Salit ML, Zook JM. PMID: 26217378; PMCID: PMC4493402.

View in: PubMed Mentions: 78
Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. Genome Med. 2015; 7(1):52. Sahl JW, Schupp JM, Rasko DA, Colman RE, Foster JT, Keim P. PMID: 26136847; PMCID: PMC4487561.

View in: PubMed Mentions: 23 Fields:
Gen Genetics
Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing. PLoS One. 2015; 10(5):e0126626. Colman RE, Schupp JM, Hicks ND, Smith DE, Buchhagen JL, Valafar F, Crudu V, Romancenco E, Noroc E, Jackson L, Catanzaro DG, Rodwell TC, Catanzaro A, Keim P, Engelthaler DM. PMID: 25970423; PMCID: PMC4430321.

View in: PubMed Mentions: 45 Fields:
Med Medicine (General)Sci Science
Translation:Humans Cells
Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence. PLoS One. 2015; 10(3):e0121052. Sahl JW, Allender CJ, Colman RE, Califf KJ, Schupp JM, Currie BJ, Van Zandt KE, Gelhaus HC, Keim P, Tuanyok A. PMID: 25803742; PMCID: PMC4372212.

View in: PubMed Mentions: 16 Fields:
Med Medicine (General)Sci Science
Translation:Animals Cells
Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry. J Med Microbiol. 2013 Sep; 62(Pt 9):1295-1300. Sarovich DS, Colman RE, Price EP, Massire C, Von Schulze AT, Waddell V, Anderson SM, Ecker DJ, Liguori AP, Engelthaler DM, Sampath R, Keim P, Eshoo MW, Wagner DM. PMID: 23741021.

View in: PubMed Mentions: 2 Fields:
Mic Microbiology
Translation:Humans Cells
Escherichia coli O157:H7 in Ecuador: animal reservoirs, yet no human disease. Vector Borne Zoonotic Dis. 2013 May; 13(5):295-8. Trueba G, Garcés V, V VB, Colman RE, Seymour M, Vogler AJ, Keim P. PMID: 23473224.

View in: PubMed Mentions: 4 Fields:
Com Communicable Diseases Epi Epidemiology Vet Veterinary Medicine
Translation:Humans Animals Cells
Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011. PLoS One. 2012; 7(11):e49989. Etienne KA, Gillece J, Hilsabeck R, Schupp JM, Colman R, Lockhart SR, Gade L, Thompson EH, Sutton DA, Neblett-Fanfair R, Park BJ, Turabelidze G, Keim P, Brandt ME, Deak E, Engelthaler DM. PMID: 23209631; PMCID: PMC3507928.

View in: PubMed Mentions: 39 Fields:
Med Medicine (General)Sci Science
Translation:Humans Animals PHPublic Health
Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. J Clin Microbiol. 2012 Jun; 50(6):2059-62. Kaestli M, Richardson LJ, Colman RE, Tuanyok A, Price EP, Bowers JR, Mayo M, Kelley E, Seymour ML, Sarovich DS, Pearson T, Engelthaler DM, Wagner DM, Keim PS, Schupp JM, Currie BJ. PMID: 22442327; PMCID: PMC3372170.

View in: PubMed Mentions: 24 Fields:
Mic Microbiology
Translation:Humans Cells
Population differences in host immune factors may influence survival of Gunnison's prairie dogs (Cynomys gunnisoni) during plague outbreaks. J Wildl Dis. 2011 Oct; 47(4):968-73. Busch JD, Van Andel R, Cordova J, Colman RE, Keim P, Rocke TE, Leid JG, Van Pelt WE, Wagner DM. PMID: 22102668.

View in: PubMed Mentions: 7 Fields:
Vet Veterinary Medicine
Translation:Animals Cells PHPublic Health
Selective isolation of Yersinia pestis from plague-infected fleas. J Microbiol Methods. 2010 Jul; 82(1):95-7. Sarovich DS, Colman RE, Price EP, Chung WK, Lee J, Schupp JM, Cobble KR, Busch JD, Alexander J, Keim P, Wagner DM. PMID: 20385178; PMCID: PMC2903439.

View in: PubMed Mentions: 8 Fields:
Mic Microbiology
Translation:Animals Cells PHPublic Health
Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. PLoS Pathog. 2010 Jan 15; 6(1):e1000725. Price EP, Hornstra HM, Limmathurotsakul D, Max TL, Sarovich DS, Vogler AJ, Dale JL, Ginther JL, Leadem B, Colman RE, Foster JT, Tuanyok A, Wagner DM, Peacock SJ, Pearson T, Keim P. PMID: 20090837; PMCID: PMC2799673.

View in: PubMed Mentions: 34 Fields:
Mic Microbiology
Translation:Humans Cells
Fine-scale identification of the most likely source of a human plague infection. Emerg Infect Dis. 2009 Oct; 15(10):1623-5. Colman RE, Vogler AJ, Lowell JL, Gage KL, Morway C, Reynolds PJ, Ettestad P, Keim P, Kosoy MY, Wagner DM. PMID: 19861057; PMCID: PMC2866393.

View in: PubMed Mentions: 8 Fields:
Com Communicable Diseases
Translation:Humans Cells
Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. J Bacteriol. 2006 Jun; 188(12):4253-63. Vogler AJ, Keys C, Nemoto Y, Colman RE, Jay Z, Keim P. PMID: 16740932; PMCID: PMC1482962.

View in: PubMed Mentions: 58 Fields:
Bac Bacteriology
Translation:Humans Animals Cells