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    Pieter Dorrestein

    TitleProfessor
    SchoolUniversity of California, San Diego
    DepartmentPediatrics
    Address9500 Gilman Drive #0751
    CA La Jolla 92093
    Phone858-534-6607
    vCardDownload vCard

      Collapse Biography 
      Collapse Education and Training
      Ph.D.Cornell University

      Collapse Overview 

      Collapse Research 
      Collapse Research Activities and Funding
      Reuse of Public Metabolomics Data
      NIH/NCI R03CA211211Sep 15, 2016 - Aug 31, 2017
      Role: Principal Investigator
      Tools for rapid and accurate structure elucidation of natural products
      NIH/NIGMS R01GM107550Sep 5, 2013 - Apr 30, 2021
      Role: Principal Investigator
      Experiment based genome mining of ribosomal natural products
      NIH/NIGMS R01GM097509Apr 1, 2012 - Feb 29, 2016
      Role: Principal Investigator
      Synapt ion mobility mass spectrometer
      NIH/NCRR S10RR029121Jun 15, 2011 - Jun 14, 2012
      Role: Principal Investigator
      The chemical and genetic basis of interspecies interactions
      NIH/NIAID R01AI095125Mar 7, 2011 - Feb 28, 2015
      Role: Principal Investigator
      Real-Time Imaging of metabolic Communication
      NIH/NIGMS R01GM094802Sep 1, 2010 - Aug 31, 2014
      Role: Principal Investigator
      New approaches to sequencing of complex peptides.
      NIH/NIGMS R01GM086283Sep 25, 2008 - Aug 31, 2012
      Role: Principal Investigator
      Enzymology of NRPS and PKS proteins by mass spectrometry
      NIH/NIGMS F32GM073323Mar 16, 2005 - Mar 15, 2008
      Role: Principal Investigator

      Collapse ORNG Applications 
      Collapse Websites

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. McCall LI, Morton JT, Bernatchez JA, Siqueira-Neto JL, Knight R, Dorrestein P, McKerrow JH. Mass Spectrometry-Based Chemical Cartography of a Cardiac Parasitic Infection. Anal Chem. 2017 Sep 11. PMID: 28892370.
        View in: PubMed
      2. Naman CB, Almaliti J, Armstrong L, Caro-Díaz EJ, Pierce ML, Glukhov E, Fenner A, Spadafora C, Debonsi HM, Dorrestein P, Murray TF, Gerwick WH. Discovery and Synthesis of Caracolamide A, an Ion Channel Modulating Dichlorovinylidene Containing Phenethylamide from a Panamanian Marine Cyanobacterium cf. Symploca Species. J Nat Prod. 2017 Aug 25; 80(8):2328-2334. PMID: 28783331.
        View in: PubMed
      3. Melnik AV, da Silva RR, Hyde ER, Aksenov AA, Vargas F, Bouslimani A, Protsyuk I, Jarmusch AK, Tripathi A, Alexandrov T, Knight R, Dorrestein P. Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples. Anal Chem. 2017 Jul 18; 89(14):7549-7559. PMID: 28628333.
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      4. Vrbanac A, Debelius JW, Jiang L, Morton JT, Dorrestein P, Knight R. An Elegan(t) Screen for Drug-Microbe Interactions. Cell Host Microbe. 2017 May 10; 21(5):555-556. PMID: 28494234.
        View in: PubMed
      5. Comstock WJ, Huh E, Weekes R, Watson C, Xu T, Dorrestein P, Quinn RA. The WinCF Model - An Inexpensive and Tractable Microcosm of a Mucus Plugged Bronchiole to Study the Microbiology of Lung Infections. J Vis Exp. 2017 May 08; (123). PMID: 28518116.
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      6. Metcalf JL, Xu ZZ, Bouslimani A, Dorrestein P, Carter DO, Knight R. Microbiome Tools for Forensic Science. Trends Biotechnol. 2017 Sep; 35(9):814-823. PMID: 28366290.
        View in: PubMed
      7. Floros DJ, Petras D, Kapono CA, Melnik AV, Ling TJ, Knight R, Dorrestein P. Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites. Front Plant Sci. 2017; 8:429. PMID: 28405197.
        View in: PubMed
      8. Nakatsuji T, Chen TH, Narala S, Chun KA, Two AM, Yun T, Shafiq F, Kotol PF, Bouslimani A, Melnik AV, Latif H, Kim JN, Lockhart A, Artis K, David G, Taylor P, Streib J, Dorrestein P, Grier A, Gill SR, Zengler K, Hata TR, Leung DY, Gallo RL. Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis. Sci Transl Med. 2017 Feb 22; 9(378). PMID: 28228596.
        View in: PubMed
      9. Nguyen DD, Melnik AV, Koyama N, Lu X, Schorn M, Fang J, Aguinaldo K, Lincecum TL, Ghequire MG, Carrion VJ, Cheng TL, Duggan BM, Malone JG, Mauchline TH, Sanchez LM, Kilpatrick AM, Raaijmakers JM, De Mot R, Moore BS, Medema MH, Dorrestein P. Erratum: Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides. Nat Microbiol. 2017 Jan 23; 2:17010. PMID: 28112718.
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      10. Morton JT, Sanders J, Quinn RA, McDonald D, Gonzalez A, Vázquez-Baeza Y, Navas-Molina JA, Song SJ, Metcalf JL, Hyde ER, Lladser M, Dorrestein P, Knight R. Balance Trees Reveal Microbial Niche Differentiation. mSystems. 2017 Jan-Feb; 2(1). PMID: 28144630.
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      11. Garg N, Zeng Y, Edlund A, Melnik AV, Sanchez LM, Mohimani H, Gurevich A, Miao V, Schiffler S, Lim YW, Luzzatto-Knaan T, Cai S, Rohwer F, Pevzner PA, Cichewicz RH, Alexandrov T, Dorrestein P. Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen. mSystems. 2016 Nov-Dec; 1(6). PMID: 28028548.
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      12. Nothias LF, Knight R, Dorrestein P. Antibiotic discovery is a walk in the park. Proc Natl Acad Sci U S A. 2016 Dec 20; 113(51):14477-14479. PMID: 27940910.
        View in: PubMed
      13. Bouslimani A, Melnik AV, Xu Z, Amir A, da Silva RR, Wang M, Bandeira N, Alexandrov T, Knight R, Dorrestein P. Lifestyle chemistries from phones for individual profiling. Proc Natl Acad Sci U S A. 2016 Nov 14. PMID: 27849584.
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      14. Wohlgemuth G, Mehta SS, Mejia RF, Neumann S, Pedrosa D, Pluskal T, Schymanski EL, Willighagen EL, Wilson M, Wishart DS, Arita M, Dorrestein P, Bandeira N, Wang M, Schulze T, Salek RM, Steinbeck C, Nainala VC, Mistrik R, Nishioka T, Fiehn O. SPLASH, a hashed identifier for mass spectra. Nat Biotechnol. 2016 Nov 8; 34(11):1099-1101. PMID: 27824832.
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      15. Petras D, Nothias LF, Quinn RA, Alexandrov T, Bandeira N, Bouslimani A, Castro-Falcón G, Chen L, Dang T, Floros DJ, Hook VY, Garg N, Hoffner N, Jiang Y, Kapono CA, Koester I, Knight R, Leber CA, Ling T, Luzzatto-Knaan T, McCall LI, McGrath AP, Meehan MJ, Merritt JK, Mills RH, Morton J, Podvin S, Protsyuk I, Purdy T, Satterfield K, Searles S, Shah S, Shires S, Steffen D, White M, Todoric J, Tuttle R, Wojnicz A, Sapp V, Vargas F, Yang J, Zhang C, Dorrestein P. Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats. Anal Chem. 2016 Oct 12. PMID: 27732780.
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      16. Quinn RA, Lim YW, Mak TD, Whiteson K, Furlan M, Conrad D, Rohwer F, Dorrestein P. Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease. PeerJ. 2016; 4:e2174. PMID: 27602256; PMCID: PMC4991883.
      17. Floros DJ, Jensen PR, Dorrestein P, Koyama N. A metabolomics guided exploration of marine natural product chemical space. Metabolomics. 2016 Sep; 12(9). PMID: 28819353.
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      18. Gilbert JA, Quinn RA, Debelius J, Xu ZZ, Morton J, Garg N, Jansson JK, Dorrestein P, Knight R. Microbiome-wide association studies link dynamic microbial consortia to disease. Nature. 2016 Jul 7; 535(7610):94-103. PMID: 27383984.
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      19. Dorrestein P, Gallo RL, Knight R. Microbial Skin Inhabitants: Friends Forever. Cell. 2016 May 5; 165(4):771-2. PMID: 27153488.
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      20. Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein P, Knight R. From Sample to Multi-Omics Conclusions in under 48 Hours. mSystems. 2016 Mar-Apr; 1(2). PMID: 27822524.
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      21. Miyamoto S, Hsu CC, Hamm G, Darshi M, Diamond-Stanic M, Declèves AE, Slater L, Pennathur S, Stauber J, Dorrestein P, Sharma K. Mass Spectrometry Imaging Reveals Elevated Glomerular ATP/AMP in Diabetes/obesity and Identifies Sphingomyelin as a Possible Mediator. EBioMedicine. 2016 May; 7:121-34. PMID: 27322466.
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      22. Biteen JS, Blainey PC, Cardon ZG, Chun M, Church GM, Dorrestein P, Fraser SE, Gilbert JA, Jansson JK, Knight R, Miller JF, Ozcan A, Prather KA, Quake SR, Ruby EG, Silver PA, Taha S, van den Engh G, Weiss PS, Wong GC, Wright AT, Young TD. Tools for the Microbiome: Nano and Beyond. ACS Nano. 2016 Jan 26; 10(1):6-37. PMID: 26695070.
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      23. Nonejuie P, Trial RM, Newton GL, Lamsa A, Ranmali Perera V, Aguilar J, Liu WT, Dorrestein P, Pogliano J, Pogliano K. Application of bacterial cytological profiling to crude natural product extracts reveals the antibacterial arsenal of Bacillus subtilis. J Antibiot (Tokyo). 2016 May; 69(5):353-61. PMID: 26648120.
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      24. Quinn RA, Phelan VV, Whiteson KL, Garg N, Bailey BA, Lim YW, Conrad DJ, Dorrestein P, Rohwer FL. Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome. ISME J. 2015 Dec 1. PMID: 26623545.
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      25. da Silva RR, Dorrestein P, Quinn RA. Illuminating the dark matter in metabolomics. Proc Natl Acad Sci U S A. 2015 Oct 13; 112(41):12549-50. PMID: 26430243.
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      26. Song C, Mazzola M, Cheng X, Oetjen J, Alexandrov T, Dorrestein P, Watrous J, van der Voort M, Raaijmakers JM. Molecular and chemical dialogues in bacteria-protozoa interactions. Sci Rep. 2015; 5:12837. PMID: 26246193.
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      27. Patin NV, Duncan KR, Dorrestein P, Jensen PR. Competitive strategies differentiate closely related species of marine actinobacteria. ISME J. 2016 Feb; 10(2):478-90. PMID: 26241505.
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      28. Boudreau PD, Monroe EA, Mehrotra S, Desfor S, Korobeynikov A, Sherman DH, Murray TF, Gerwick L, Dorrestein P, Gerwick WH. Expanding the Described Metabolome of the Marine Cyanobacterium Moorea producens JHB through Orthogonal Natural Products Workflows. PLoS One. 2015; 10(7):e0133297. PMID: 26222584.
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      29. Oetjen J, Veselkov K, Watrous J, McKenzie JS, Becker M, Hauberg-Lotte L, Kobarg JH, Strittmatter N, Mróz AK, Hoffmann F, Trede D, Palmer A, Schiffler S, Steinhorst K, Aichler M, Goldin R, Guntinas-Lichius O, von Eggeling F, Thiele H, Maedler K, Walch A, Maass P, Dorrestein P, Takats Z, Alexandrov T. Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry. Gigascience. 2015; 4:20. PMID: 25941567.
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      30. Duncan KR, Crüsemann M, Lechner A, Sarkar A, Li J, Ziemert N, Wang M, Bandeira N, Moore BS, Dorrestein P, Jensen PR. Molecular Networking and Pattern-Based Genome Mining Improves Discovery of Biosynthetic Gene Clusters and their Products from Salinispora Species. Chem Biol. 2015 Apr 23; 22(4):460-71. PMID: 25865308.
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      31. Bouslimani A, Porto C, Rath CM, Wang M, Guo Y, Gonzalez A, Berg-Lyon D, Ackermann G, Moeller Christensen GJ, Nakatsuji T, Zhang L, Borkowski AW, Meehan MJ, Dorrestein K, Gallo RL, Bandeira N, Knight R, Alexandrov T, Dorrestein P. Molecular cartography of the human skin surface in 3D. Proc Natl Acad Sci U S A. 2015 Apr 28; 112(17):E2120-9. PMID: 25825778.
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      32. Mascuch SJ, Moree WJ, Hsu CC, Turner GG, Cheng TL, Blehert DS, Kilpatrick AM, Frick WF, Meehan MJ, Dorrestein P, Gerwick L. Direct Detection of Fungal Siderophores on Bats with White-Nose Syndrome via Fluorescence Microscopy-Guided Ambient Ionization Mass Spectrometry. PLoS One. 2015; 10(3):e0119668. PMID: 25781976.
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      33. Bertin MJ, Schwartz SL, Lee J, Korobeynikov A, Dorrestein P, Gerwick L, Gerwick WH. Spongosine Production by a Vibrio harveyi Strain Associated with the Sponge Tectitethya crypta. J Nat Prod. 2015 Mar 27; 78(3):493-9. PMID: 25668560.
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      34. Garg N, Kapono C, Lim YW, Koyama N, Vermeij MJ, Conrad D, Rohwer F, Dorrestein P. Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures. Int J Mass Spectrom. 2015 Feb 01; 377:719-717. PMID: 25844058.
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      35. Sharon G, Garg N, Debelius J, Knight R, Dorrestein P, Mazmanian SK. Specialized metabolites from the microbiome in health and disease. Cell Metab. 2014 Nov 4; 20(5):719-30. PMID: 25440054.
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      36. Medema MH, Paalvast Y, Nguyen DD, Melnik A, Dorrestein P, Takano E, Breitling R. Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products. PLoS Comput Biol. 2014 Sep; 10(9):e1003822. PMID: 25188327.
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      37. Hsu CC, Dorrestein P. Visualizing life with ambient mass spectrometry. Curr Opin Biotechnol. 2015 Feb; 31:24-34. PMID: 25146170.
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      38. Mohimani H, Liu WT, Kersten RD, Moore BS, Dorrestein P, Pevzner PA. NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery. J Nat Prod. 2014 Aug 22; 77(8):1902-9. PMID: 25116163.
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      39. Moree WJ, McConnell OJ, Nguyen DD, Sanchez LM, Yang YL, Zhao X, Liu WT, Boudreau PD, Srinivasan J, Atencio L, Ballesteros J, Gavilán RG, Torres-Mendoza D, Guzmán HM, Gerwick WH, Gutiérrez M, Dorrestein P. Microbiota of Healthy Corals Are Active against Fungi in a Light-Dependent Manner. ACS Chem Biol. 2014 Oct 17; 9(10):2300-8. PMID: 25058318.
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      40. Fang J, Dorrestein P. Emerging mass spectrometry techniques for the direct analysis of microbial colonies. Curr Opin Microbiol. 2014 Jun; 19:120-9. PMID: 25064218.
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      41. Dorrestein P, Mazmanian SK, Knight R. Finding the missing links among metabolites, microbes, and the host. Immunity. 2014 Jun 19; 40(6):824-32. PMID: 24950202.
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      42. Mohimani H, Kersten RD, Liu WT, Wang M, Purvine SO, Wu S, Brewer HM, Pasa-Tolic L, Bandeira N, Moore BS, Pevzner PA, Dorrestein P. Automated genome mining of ribosomal Peptide natural products. ACS Chem Biol. 2014 Jul 18; 9(7):1545-51. PMID: 24802639.
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      43. Bouslimani A, Sanchez LM, Garg N, Dorrestein P. Mass spectrometry of natural products: current, emerging and future technologies. Nat Prod Rep. 2014 Jun 14; 31(6):718-29. PMID: 24801551.
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      44. Dorrestein P. Editorial: Mass spectrometry of small molecules and natural products. Nat Prod Rep. 2014 Jun 14; 31(6):704-5. PMID: 24801653.
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      45. Ursell LK, Haiser HJ, Van Treuren W, Garg N, Reddivari L, Vanamala J, Dorrestein P, Turnbaugh PJ, Knight R. The intestinal metabolome: an intersection between microbiota and host. Gastroenterology. 2014 May; 146(6):1470-6. PMID: 24631493.
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      46. Mevers E, Haeckl FP, Boudreau PD, Byrum T, Dorrestein P, Valeriote FA, Gerwick WH. Lipopeptides from the Tropical Marine Cyanobacterium Symploca sp. J Nat Prod. 2014 Apr 25; 77(4):969-75. PMID: 24588245.
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      47. Phelan VV, Moree WJ, Aguilar J, Cornett DS, Koumoutsi A, Noble SM, Pogliano K, Guerrero CA, Dorrestein P. Impact of a Transposon Insertion in phzF2 on the Specialized Metabolite Production and Interkingdom Interactions of Pseudomonas aeruginosa. J Bacteriol. 2014 May; 196(9):1683-93. PMID: 24532776.
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      48. Yamanaka K, Reynolds KA, Kersten RD, Ryan KS, Gonzalez DJ, Nizet V, Dorrestein P, Moore BS. Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A. Proc Natl Acad Sci U S A. 2014 Feb 4; 111(5):1957-62. PMID: 24449899.
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      49. Winnikoff JR, Glukhov E, Watrous J, Dorrestein P, Gerwick WH. Quantitative molecular networking to profile marine cyanobacterial metabolomes. J Antibiot (Tokyo). 2014 Jan; 67(1):105-12. PMID: 24281659.
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      50. Kersten RD, Ziemert N, Gonzalez DJ, Duggan BM, Nizet V, Dorrestein P, Moore BS. Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules. Proc Natl Acad Sci U S A. 2013 Nov 19; 110(47):E4407-16. PMID: 24191063.
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      51. Liu WT, Lamsa A, Wong WR, Boudreau PD, Kersten R, Peng Y, Moree WJ, Duggan BM, Moore BS, Gerwick WH, Linington RG, Pogliano K, Dorrestein P. MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus. J Antibiot (Tokyo). 2014 Jan; 67(1):99-104. PMID: 24149839.
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      52. Watrous J, Roach P, Heath B, Alexandrov T, Laskin J, Dorrestein P. Metabolic profiling directly from the petri dish using nanospray desorption electrospray ionization imaging mass spectrometry. Anal Chem. 2013 Nov 5; 85(21):10385-91. PMID: 24047514.
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      53. Yang JY, Sanchez LM, Rath CM, Liu X, Boudreau PD, Bruns N, Glukhov E, Wodtke A, de Felicio R, Fenner A, Wong WR, Linington RG, Zhang L, Debonsi HM, Gerwick WH, Dorrestein P. Molecular networking as a dereplication strategy. J Nat Prod. 2013 Sep 27; 76(9):1686-99. PMID: 24025162.
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      54. Hsu CC, White NM, Hayashi M, Lin EC, Poon T, Banerjee I, Chen J, Pfaff SL, Macagno ER, Dorrestein P. Microscopy ambient ionization top-down mass spectrometry reveals developmental patterning. Proc Natl Acad Sci U S A. 2013 Sep 10; 110(37):14855-60. PMID: 23969833.
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      55. Traxler MF, Watrous JD, Alexandrov T, Dorrestein P, Kolter R. Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome. MBio. 2013; 4(4). PMID: 23963177.
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      56. Nguyen DD, Wu CH, Moree WJ, Lamsa A, Medema MH, Zhao X, Gavilan RG, Aparicio M, Atencio L, Jackson C, Ballesteros J, Sanchez J, Watrous JD, Phelan VV, van de Wiel C, Kersten RD, Mehnaz S, De Mot R, Shank EA, Charusanti P, Nagarajan H, Duggan BM, Moore BS, Bandeira N, Palsson BØ, Pogliano K, Gutiérrez M, Dorrestein P. MS/MS networking guided analysis of molecule and gene cluster families. Proc Natl Acad Sci U S A. 2013 Jul 9; 110(28):E2611-20. PMID: 23798442.
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      57. Kersten RD, Lane AL, Nett M, Richter TK, Duggan BM, Dorrestein P, Moore BS. Bioactivity-guided genome mining reveals the lomaiviticin biosynthetic gene cluster in Salinispora tropica. Chembiochem. 2013 May 27; 14(8):955-62. PMID: 23649992.
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      58. Rath CM, Yang JY, Alexandrov T, Dorrestein P. Data-independent microbial metabolomics with ambient ionization mass spectrometry. J Am Soc Mass Spectrom. 2013 Aug; 24(8):1167-76. PMID: 23568029.
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      59. Ross AC, Xu Y, Lu L, Kersten RD, Shao Z, Al-Suwailem AM, Dorrestein P, Qian PY, Moore BS. Biosynthetic multitasking facilitates thalassospiramide structural diversity in marine bacteria. J Am Chem Soc. 2013 Jan 23; 135(3):1155-62. PMID: 23270364.
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      60. Watrous JD, Phelan VV, Hsu CC, Moree WJ, Duggan BM, Alexandrov T, Dorrestein P. Microbial metabolic exchange in 3D. ISME J. 2013 Apr; 7(4):770-80. PMID: 23283018.
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      61. Arnison PG, Bibb MJ, Bierbaum G, Bowers AA, Bugni TS, Bulaj G, Camarero JA, Campopiano DJ, Challis GL, Clardy J, Cotter PD, Craik DJ, Dawson M, Dittmann E, Donadio S, Dorrestein P, Entian KD, Fischbach MA, Garavelli JS, Göransson U, Gruber CW, Haft DH, Hemscheidt TK, Hertweck C, Hill C, Horswill AR, Jaspars M, Kelly WL, Klinman JP, Kuipers OP, Link AJ, Liu W, Marahiel MA, Mitchell DA, Moll GN, Moore BS, Müller R, Nair SK, Nes IF, Norris GE, Olivera BM, Onaka H, Patchett ML, Piel J, Reaney MJ, Rebuffat S, Ross RP, Sahl HG, Schmidt EW, Selsted ME, Severinov K, Shen B, Sivonen K, Smith L, Stein T, Süssmuth RD, Tagg JR, Tang GL, Truman AW, Vederas JC, Walsh CT, Walton JD, Wenzel SC, Willey JM, van der Donk WA. Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. Nat Prod Rep. 2013 Jan; 30(1):108-60. PMID: 23165928.
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      62. Rath CM, Alexandrov T, Higginbottom SK, Song J, Milla ME, Fischbach MA, Sonnenburg JL, Dorrestein P. Molecular analysis of model gut microbiotas by imaging mass spectrometry and nanodesorption electrospray ionization reveals dietary metabolite transformations. Anal Chem. 2012 Nov 6; 84(21):9259-67. PMID: 23009651.
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      63. Hollands A, Gonzalez D, Leire E, Donald C, Gallo RL, Sanderson-Smith M, Dorrestein P, Nizet V. A bacterial pathogen co-opts host plasmin to resist killing by cathelicidin antimicrobial peptides. J Biol Chem. 2012 Nov 30; 287(49):40891-7. PMID: 23038245.
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      64. Guthals A, Watrous JD, Dorrestein P, Bandeira N. The spectral networks paradigm in high throughput mass spectrometry. Mol Biosyst. 2012 Oct; 8(10):2535-44. PMID: 22610447.
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      65. Boudreau PD, Byrum T, Liu WT, Dorrestein P, Gerwick WH. Viequeamide A, a cytotoxic member of the kulolide superfamily of cyclic depsipeptides from a marine button cyanobacterium. J Nat Prod. 2012 Sep 28; 75(9):1560-70. PMID: 22924493.
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      66. Roberts AA, Schultz AW, Kersten RD, Dorrestein P, Moore BS. Iron acquisition in the marine actinomycete genus Salinispora is controlled by the desferrioxamine family of siderophores. FEMS Microbiol Lett. 2012 Oct; 335(2):95-103. PMID: 22812504.
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      67. Moree WJ, Phelan VV, Wu CH, Bandeira N, Cornett DS, Duggan BM, Dorrestein P. Interkingdom metabolic transformations captured by microbial imaging mass spectrometry. Proc Natl Acad Sci U S A. 2012 Aug 21; 109(34):13811-6. PMID: 22869730.
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      68. Yang JY, Phelan VV, Simkovsky R, Watrous JD, Trial RM, Fleming TC, Wenter R, Moore BS, Golden SS, Pogliano K, Dorrestein P. Primer on agar-based microbial imaging mass spectrometry. J Bacteriol. 2012 Nov; 194(22):6023-8. PMID: 22821974.
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      69. Watrous J, Roach P, Alexandrov T, Heath BS, Yang JY, Kersten RD, van der Voort M, Pogliano K, Gross H, Raaijmakers JM, Moore BS, Laskin J, Bandeira N, Dorrestein P. Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci U S A. 2012 Jun 26; 109(26):E1743-52. PMID: 22586093.
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      70. Lamsa A, Liu WT, Dorrestein P, Pogliano K. The Bacillus subtilis cannibalism toxin SDP collapses the proton motive force and induces autolysis. Mol Microbiol. 2012 May; 84(3):486-500. PMID: 22469514.
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      71. Gonzalez DJ, Okumura CY, Hollands A, Kersten R, Akong-Moore K, Pence MA, Malone CL, Derieux J, Moore BS, Horswill AR, Dixon JE, Dorrestein P, Nizet V. Novel phenol-soluble modulin derivatives in community-associated methicillin-resistant Staphylococcus aureus identified through imaging mass spectrometry. J Biol Chem. 2012 Apr 20; 287(17):13889-98. PMID: 22371493.
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      72. Rath CM, Dorrestein P. The bacterial chemical repertoire mediates metabolic exchange within gut microbiomes. Curr Opin Microbiol. 2012 Apr; 15(2):147-54. PMID: 22209085.
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      73. Phelan VV, Liu WT, Pogliano K, Dorrestein P. Microbial metabolic exchange--the chemotype-to-phenotype link. Nat Chem Biol. 2012 Jan; 8(1):26-35. PMID: 22173357.
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      74. Yang L, Lin C, Liu W, Zhang J, Ohgi KA, Grinstein JD, Dorrestein P, Rosenfeld MG. ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs. Cell. 2011 Nov 11; 147(4):773-88. PMID: 22078878.
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      75. Mohimani H, Liu WT, Yang YL, Gaudêncio SP, Fenical W, Dorrestein P, Pevzner PA. Multiplex de novo sequencing of peptide antibiotics. J Comput Biol. 2011 Nov; 18(11):1371-81. PMID: 22035290.
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