Oliver Ryder

Title(s)Adjunct Professor, Ecology, Behavior, and Evolution
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    COMPARATIVE MOLECULAR CYTOGENETICS
    NIH R01GM023073Jun 1, 1976 - Dec 31, 1988
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements. Science. 2024 Feb 29; eabn3263. Wirthlin ME, Schmid TA, Elie JE, Zhang X, Kowalczyk A, Redlich R, Shvareva VA, Rakuljic A, Ji MB, Bhat NS, Kaplow IM, Schäffer DE, Lawler AJ, Wang AZ, Phan BN, Annaldasula S, Brown AR, Lu T, Lim BK, Azim E, Zoonomia Consortium**, Clark NL, Meyer WK, Pond SLK, Chikina M, Yartsev MM, Pfenning AR, Andrews G, Armstrong JC, Bianchi M, Birren BW, Bredemeyer KR, Breit AM, Christmas MJ, Clawson H, Damas J, Di Palma F, Diekhans M, Dong MX, Eizirik E, Fan K, Fanter C, Foley NM, Forsberg-Nilsson K, Garcia CJ, Gatesy J, Gazal S, Genereux DP, Goodman L, Grimshaw J, Halsey MK, Harris AJ, Hickey G, Hiller M, Hindle AG, Hubley RM, Hughes GM, Johnson J, Juan D, Kaplow IM, Karlsson EK, Keough KC, Kirilenko B, Koepfli KP, Korstian JM, Kowalczyk A, Kozyrev SV, Lawler AJ, Lawless C, Lehmann T, Levesque DL, Lewin HA, Li X, Lind A, Lindblad-Toh K, Mackay-Smith A, Marinescu VD, Marques-Bonet T, Mason VC, Meadows JRS, Meyer WK, Moore JE, Moreira LR, Moreno-Santillan DD, Morrill KM, Muntané G, Murphy WJ, Navarro A, Nweeia M, Ortmann S, Osmanski A, Paten B, Paulat NS, Pfenning AR, Phan BN, Pollard KS, Pratt HE, Ray DA, Reilly SK, Rosen JR, Ruf I, Ryan L, Ryder OA, Sabeti PC, Schäffer DE, Serres A, Shapiro B, Smit AFA, Springer M, Srinivasan C, Steiner C, Storer JM, Sullivan KAM, Sullivan PF, Sundström E, Supple MA, Swofford R, Talbot JE, Teeling E, Turner-Maier J, Valenzuela A, Wagner F, Wallerman O, Wang C, Wang J, Weng Z, Wilder AP, Wirthlin ME, Xue JR, Zhang X. PMID: 38422184.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    2. The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes. bioRxiv. 2023 Dec 01. Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, Bomberg E, Bouffard GG, Brooks SY, Carbone L, Carrel L, Carroll A, Chang PC, Chin CS, Cook DE, Craig SJC, de Gennaro L, Diekhans M, Dutra A, Garcia GH, Grady PGS, Green RE, Haddad D, Hallast P, Harvey WT, Hickey G, Hillis DA, Hoyt SJ, Jeong H, Kamali K, Kosakovsky Pond SL, LaPolice TM, Lee C, Lewis AP, Loh YE, Masterson P, McCoy RC, Medvedev P, Miga KH, Munson KM, Pak E, Paten B, Pinto BJ, Potapova T, Rhie A, Rocha JL, Ryabov F, Ryder OA, Sacco S, Shafin K, Shepelev VA, Slon V, Solar SJ, Storer JM, Sudmant PH, Sweeten A, Tassia MG, Thibaud-Nissen F, Ventura M, Wilson MA, Young AC, Zeng H, Zhang X, Szpiech ZA, Huber CD, Gerton JL, Yi SV, Schatz MC, Alexandrov IA, Koren S, O'Neill RJ, Eichler E, Phillippy AM. PMID: 38077089; PMCID: PMC10705393.
      View in: PubMed   Mentions:
    3. Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes). J Hered. 2023 08 23; 114(5):539-548. Kliver S, Houck ML, Perelman PL, Totikov A, Tomarovsky A, Dudchenko O, Omer AD, Colaric Z, Weisz D, Aiden EL, Chan S, Hastie A, Komissarov A, Ryder OA, Graphodatsky A, Johnson WE, Maldonado JE, Pukazhenthi BS, Marinari PE, Wildt DE, Koepfli KP. PMID: 37249392; PMCID: PMC10848218.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    4. Maximizing the potential for living cell banks to contribute to global conservation priorities. Zoo Biol. 2023 Nov-Dec; 42(6):697-708. Mooney A, Ryder OA, Houck ML, Staerk J, Conde DA, Buckley YM. PMID: 37283210.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    5. Evolutionary constraint and innovation across hundreds of placental mammals. Science. 2023 04 28; 380(6643):eabn3943. Christmas MJ, Kaplow IM, Genereux DP, Dong MX, Hughes GM, Li X, Sullivan PF, Hindle AG, Andrews G, Armstrong JC, Bianchi M, Breit AM, Diekhans M, Fanter C, Foley NM, Goodman DB, Goodman L, Keough KC, Kirilenko B, Kowalczyk A, Lawless C, Lind AL, Meadows JRS, Moreira LR, Redlich RW, Ryan L, Swofford R, Valenzuela A, Wagner F, Wallerman O, Brown AR, Damas J, Fan K, Gatesy J, Grimshaw J, Johnson J, Kozyrev SV, Lawler AJ, Marinescu VD, Morrill KM, Osmanski A, Paulat NS, Phan BN, Reilly SK, Schäffer DE, Steiner C, Supple MA, Wilder AP, Wirthlin ME, Xue JR, Zoonomia Consortium§, Birren BW, Gazal S, Hubley RM, Koepfli KP, Marques-Bonet T, Meyer WK, Nweeia M, Sabeti PC, Shapiro B, Smit AFA, Springer MS, Teeling EC, Weng Z, Hiller M, Levesque DL, Lewin HA, Murphy WJ, Navarro A, Paten B, Pollard KS, Ray DA, Ruf I, Ryder OA, Pfenning AR, Lindblad-Toh K, Karlsson EK. PMID: 37104599; PMCID: PMC10250106.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    6. Three-dimensional genome rewiring in loci with human accelerated regions. Science. 2023 04 28; 380(6643):eabm1696. Keough KC, Whalen S, Inoue F, Przytycki PF, Fair T, Deng C, Steyert M, Ryu H, Lindblad-Toh K, Karlsson E, Zoonomia Consortium§, Nowakowski T, Ahituv N, Pollen A, Pollard KS. PMID: 37104607.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    7. The functional and evolutionary impacts of human-specific deletions in conserved elements. Science. 2023 04 28; 380(6643):eabn2253. Xue JR, Mackay-Smith A, Mouri K, Garcia MF, Dong MX, Akers JF, Noble M, Li X, Zoonomia Consortium†, Lindblad-Toh K, Karlsson EK, Noonan JP, Capellini TD, Brennand KJ, Tewhey R, Sabeti PC, Reilly SK. PMID: 37104592; PMCID: PMC10202372.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    8. ​Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs. Science. 2023 04 28; 380(6643):eabn5887. Moon KL, Huson HJ, Morrill K, Wang MS, Li X, Srikanth K, Zoonomia Consortium, Lindblad-Toh K, Svenson GJ, Karlsson EK, Shapiro B. PMID: 37104591; PMCID: PMC10184777.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    9. Integrating gene annotation with orthology inference at scale. Science. 2023 04 28; 380(6643):eabn3107. Kirilenko BM, Munegowda C, Osipova E, Jebb D, Sharma V, Blumer M, Morales AE, Ahmed AW, Kontopoulos DG, Hilgers L, Lindblad-Toh K, Karlsson EK, Zoonomia Consortium‡, Hiller M. PMID: 37104600; PMCID: PMC10193443.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    10. A genomic timescale for placental mammal evolution. Science. 2023 04 28; 380(6643):eabl8189. Foley NM, Mason VC, Harris AJ, Bredemeyer KR, Damas J, Lewin HA, Eizirik E, Gatesy J, Karlsson EK, Lindblad-Toh K, Zoonomia Consortium‡, Springer MS, Murphy WJ. PMID: 37104581; PMCID: PMC10233747.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    11. Relating enhancer genetic variation across mammals to complex phenotypes using machine learning. Science. 2023 04 28; 380(6643):eabm7993. Kaplow IM, Lawler AJ, Schäffer DE, Srinivasan C, Sestili HH, Wirthlin ME, Phan BN, Prasad K, Brown AR, Zhang X, Foley K, Genereux DP, Zoonomia Consortium**, Karlsson EK, Lindblad-Toh K, Meyer WK, Pfenning AR. PMID: 37104615; PMCID: PMC10322212.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    12. Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science. 2023 04 28; 380(6643):eabn2937. Sullivan PF, Meadows JRS, Gazal S, Phan BN, Li X, Genereux DP, Dong MX, Bianchi M, Andrews G, Sakthikumar S, Nordin J, Roy A, Christmas MJ, Marinescu VD, Wang C, Wallerman O, Xue J, Yao S, Sun Q, Szatkiewicz J, Wen J, Huckins LM, Lawler A, Keough KC, Zheng Z, Zeng J, Wray NR, Li Y, Johnson J, Chen J, Zoonomia Consortium§, Paten B, Reilly SK, Hughes GM, Weng Z, Pollard KS, Pfenning AR, Forsberg-Nilsson K, Karlsson EK, Lindblad-Toh K. PMID: 37104612; PMCID: PMC10259825.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansAnimals
    13. Mammalian evolution of human cis-regulatory elements and transcription factor binding sites. Science. 2023 04 28; 380(6643):eabn7930. Andrews G, Fan K, Pratt HE, Phalke N, Zoonomia Consortium§, Karlsson EK, Lindblad-Toh K, Gazal S, Moore JE, Weng Z. PMID: 37104580.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    14. The contribution of historical processes to contemporary extinction risk in placental mammals. Science. 2023 04 28; 380(6643):eabn5856. Wilder AP, Supple MA, Subramanian A, Mudide A, Swofford R, Serres-Armero A, Steiner C, Koepfli KP, Genereux DP, Karlsson EK, Lindblad-Toh K, Marques-Bonet T, Munoz Fuentes V, Foley K, Meyer WK, Zoonomia Consortium‡, Ryder OA, Shapiro B. PMID: 37104572; PMCID: PMC10184782.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    15. Insights into mammalian TE diversity through the curation of 248 genome assemblies. Science. 2023 04 28; 380(6643):eabn1430. Osmanski AB, Paulat NS, Korstian J, Grimshaw JR, Halsey M, Sullivan KAM, Moreno-Santillán DD, Crookshanks C, Roberts J, Garcia C, Johnson MG, Densmore LD, Stevens RD, Zoonomia Consortium†, Rosen J, Storer JM, Hubley R, Smit AFA, Dávalos LM, Karlsson EK, Lindblad-Toh K, Ray DA. PMID: 37104570.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    16. Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris). G3 (Bethesda). 2022 Dec 01; 12(12). Armstrong EE, Campana MG, Solari KA, Morgan SR, Ryder OA, Naude VN, Samelius G, Sharma K, Hadly EA, Petrov DA. PMID: 36250809; PMCID: PMC9713438.
      View in: PubMed   Mentions: 2     Fields:    
    17. Towards a Genetic Linkage Map of the California Condor, an Endangered New World Vulture Species. Animals (Basel). 2022 Nov 24; 12(23). Romanov MN, Da Y, Chemnick LG, Thomas SM, Dandekar SS, Papp JC, Ryder OA. PMID: 36496789.
      View in: PubMed   Mentions:
    18. Evolution of the ancestral mammalian karyotype and syntenic regions. Proc Natl Acad Sci U S A. 2022 10 04; 119(40):e2209139119. Damas J, Corbo M, Kim J, Turner-Maier J, Farré M, Larkin DM, Ryder OA, Steiner C, Houck ML, Hall S, Shiue L, Thomas S, Swale T, Daly M, Korlach J, Uliano-Silva M, Mazzoni CJ, Birren BW, Genereux DP, Johnson J, Lindblad-Toh K, Karlsson EK, Nweeia MT, Johnson RN, Zoonomia Consortium, Lewin HA. PMID: 36161960; PMCID: PMC9550189.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    19. A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population. Genome Biol Evol. 2022 08 03; 14(8). Wilder AP, Dudchenko O, Curry C, Korody M, Turbek SP, Daly M, Misuraca A, Wang G, Khan R, Weisz D, Fronczek J, Aiden EL, Houck ML, Shier DM, Ryder OA, Steiner CC. PMID: 35894178; PMCID: PMC9348616.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    20. Author Correction: Comparative and demographic analysis of orang-utan genomes. Nature. 2022 Aug; 608(7924):E36. Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AFA, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, RoyChoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK. PMID: 35962045; PMCID: PMC9402433.
      View in: PubMed   Mentions: 1     Fields:    
    21. Reference genomes for conservation. Science. 2022 07 22; 377(6604):364-366. Paez S, Kraus RHS, Shapiro B, Gilbert MTP, Jarvis ED, Vertebrate Genomes Project Conservation Group, Al-Ajli FO, Ceballos G, Crawford AJ, Fedrigo O, Johnson RN, Johnson WE, Marques-Bonet T, Morin PA, Mueller RC, Ryder OA, Teeling EC, Venkatesh B. PMID: 35862547.
      View in: PubMed   Mentions: 19     Fields:    
    22. Phylogenomics of the world's otters. Curr Biol. 2022 08 22; 32(16):3650-3658.e4. de Ferran V, Figueiró HV, de Jesus Trindade F, Smith O, Sinding MS, Trinca CS, Lazzari GZ, Veron G, Vianna JA, Barbanera F, Kliver S, Serdyukova N, Bulyonkova T, Ryder OA, Gilbert MTP, Koepfli KP, Eizirik E. PMID: 35779528.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    23. Corrigendum to: Facultative Parthenogenesis in California Condors. J Hered. 2022 May 16; 113(2):217. Ryder OA, Thomas S, Judson JM, Romanov MN, Dandekar S, Papp JC, Sidak-Loftis LC, Walker K, Stalis IH, Mace M, Steiner CC, Chemnick LG. PMID: 35575084; PMCID: PMC9113412.
      View in: PubMed   Mentions:    Fields:    
    24. Response to Bakker et al. Curr Biol. 2022 04 25; 32(8):R358-R359. Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JD. PMID: 35472421.
      View in: PubMed   Mentions:    Fields:    
    25. Darwinian genomics and diversity in the tree of life. Proc Natl Acad Sci U S A. 2022 01 25; 119(4). Stephan T, Burgess SM, Cheng H, Danko CG, Gill CA, Jarvis ED, Koepfli KP, Koltes JE, Lyons E, Ronald P, Ryder OA, Schriml LM, Soltis P, VandeWoude S, Zhou H, Ostrander EA, Karlsson EK. PMID: 35042807; PMCID: PMC8795533.
      View in: PubMed   Mentions: 7     Fields:    
    26. The Earth BioGenome Project 2020: Starting the clock. Proc Natl Acad Sci U S A. 2022 01 25; 119(4). Lewin HA, Richards S, Lieberman Aiden E, Allende ML, Archibald JM, Bálint M, Barker KB, Baumgartner B, Belov K, Bertorelle G, Blaxter ML, Cai J, Caperello ND, Carlson K, Castilla-Rubio JC, Chaw SM, Chen L, Childers AK, Coddington JA, Conde DA, Corominas M, Crandall KA, Crawford AJ, DiPalma F, Durbin R, Ebenezer TE, Edwards SV, Fedrigo O, Flicek P, Formenti G, Gibbs RA, Gilbert MTP, Goldstein MM, Graves JM, Greely HT, Grigoriev IV, Hackett KJ, Hall N, Haussler D, Helgen KM, Hogg CJ, Isobe S, Jakobsen KS, Janke A, Jarvis ED, Johnson WE, Jones SJM, Karlsson EK, Kersey PJ, Kim JH, Kress WJ, Kuraku S, Lawniczak MKN, Leebens-Mack JH, Li X, Lindblad-Toh K, Liu X, Lopez JV, Marques-Bonet T, Mazard S, Mazet JAK, Mazet JAK, Mazzoni CJ, Myers EW, O'Neill RJ, Paez S, Park H, Robinson GE, Roquet C, Ryder OA, Sabir JSM, Shaffer HB, Shank TM, Sherkow JS, Soltis PS, Tang B, Tedersoo L, Uliano-Silva M, Wang K, Wei X, Wetzer R, Wilson JL, Xu X, Yang H, Yoder AD, Zhang G. PMID: 35042800; PMCID: PMC8795548.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansAnimalsCells
    27. Why sequence all eukaryotes? Proc Natl Acad Sci U S A. 2022 01 25; 119(4). Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, Durbin R, Edwards SV, Graves JAM, Hackett KJ, Hall N, Jarvis ED, Johnson RN, Karlsson EK, Kress WJ, Kuraku S, Lawniczak MKN, Lindblad-Toh K, Lopez JV, Moran NA, Robinson GE, Ryder OA, Shapiro B, Soltis PS, Warnow T, Zhang G, Lewin HA. PMID: 35042801; PMCID: PMC8795522.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    28. Facultative Parthenogenesis in California Condors. J Hered. 2021 12 17; 112(7):569-574. Ryder OA, Thomas S, Judson JM, Romanov MN, Dandekar S, Papp JC, Sidak-Loftis LC, Walker K, Stalis IH, Mace M, Steiner CC, Chemnick LG. PMID: 34718632; PMCID: PMC8683835.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    29. Whole-genome sequences shed light on the demographic history and contemporary genetic erosion of free-ranging jaguar (Panthera onca) populations. J Genet Genomics. 2022 01; 49(1):77-80. Lorenzana GP, Figueiró HV, Kaelin CB, Barsh GS, Johnson J, Karlsson E, Morato RG, Sana DA, Cullen L, May JA, Moraes EA, Kantek DLZ, Silveira L, Murphy WJ, Ryder OA, Eizirik E. PMID: 34767971.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    30. Ancient and modern genomes unravel the evolutionary history of the rhinoceros family. Cell. 2021 09 16; 184(19):4874-4885.e16. Liu S, Westbury MV, Dussex N, Mitchell KJ, Sinding MS, Heintzman PD, Duchêne DA, Kapp JD, von Seth J, Heiniger H, Sánchez-Barreiro F, Margaryan A, André-Olsen R, De Cahsan B, Meng G, Yang C, Chen L, van der Valk T, Moodley Y, Rookmaaker K, Bruford MW, Ryder O, Steiner C, Bruins-van Sonsbeek LGR, Vartanyan S, Guo C, Cooper A, Kosintsev P, Kirillova I, Lister AM, Marques-Bonet T, Gopalakrishnan S, Dunn RR, Lorenzen ED, Shapiro B, Zhang G, Antoine PO, Dalén L, Gilbert MTP. PMID: 34433011.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    31. An Annotated Draft Genome for the Andean Bear, Tremarctos ornatus. J Hered. 2021 07 15; 112(4):377-384. Saremi NF, Oppenheimer J, Vollmers C, O'Connell B, Milne SA, Byrne A, Yu L, Ryder OA, Green RE, Shapiro B. PMID: 33882130; PMCID: PMC8280923.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    32. Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum). Mol Ecol. 2021 12; 30(23):6355-6369. Sánchez-Barreiro F, Gopalakrishnan S, Ramos-Madrigal J, Westbury MV, de Manuel M, Margaryan A, Ciucani MM, Vieira FG, Patramanis Y, Kalthoff DC, Timmons Z, Sicheritz-Pontén T, Dalén L, Ryder OA, Zhang G, Marquès-Bonet T, Moodley Y, Gilbert MTP. PMID: 34176179; PMCID: PMC9291831.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    33. Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection. Mol Biol Evol. 2021 05 19; 38(6):2366-2379. Armstrong EE, Khan A, Taylor RW, Gouy A, Greenbaum G, Thiéry A, Kang JT, Redondo SA, Prost S, Barsh G, Kaelin C, Phalke S, Chugani A, Gilbert M, Miquelle D, Zachariah A, Borthakur U, Reddy A, Louis E, Ryder OA, Jhala YV, Petrov D, Excoffier L, Hadly E, Ramakrishnan U. PMID: 33592092; PMCID: PMC8136513.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    34. Genome-wide diversity in the California condor tracks its prehistoric abundance and decline. Curr Biol. 2021 07 12; 31(13):2939-2946.e5. Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JD. PMID: 33989525.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    35. How to Make a Rodent Giant: Genomic Basis and Tradeoffs of Gigantism in the Capybara, the World's Largest Rodent. Mol Biol Evol. 2021 05 04; 38(5):1715-1730. Herrera-Álvarez S, Karlsson E, Ryder OA, Lindblad-Toh K, Crawford AJ. PMID: 33169792; PMCID: PMC8097284.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    36. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 2021 04; 592(7856):737-746. Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hannigan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sovic I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli KP, Shapiro B, Johnson WE, Di Palma F, Marques-Bonet T, Teeling EC, Warnow T, Graves JM, Ryder OA, Haussler D, O'Brien SJ, Korlach J, Lewin HA, Howe K, Myers EW, Durbin R, Phillippy AM, Jarvis ED. PMID: 33911273; PMCID: PMC8081667.
      View in: PubMed   Mentions: 494     Fields:    Translation:AnimalsCells
    37. Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations. Nat Commun. 2021 04 26; 12(1):2393. von Seth J, Dussex N, Díez-Del-Molino D, van der Valk T, Kutschera VE, Kierczak M, Steiner CC, Liu S, Gilbert MTP, Sinding MS, Prost S, Guschanski K, Nathan SKSS, Brace S, Chan YL, Wheat CW, Skoglund P, Ryder OA, Goossens B, Götherström A, Dalén L. PMID: 33896938; PMCID: PMC8071806.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    38. Author Correction: Dense sampling of bird diversity increases power of comparative genomics. Nature. 2021 Apr; 592(7856):E24. Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Andreu-Sánchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Ribeiro ÂM, Eckhart L, Fjeldså J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jønsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, González-Solís J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalén L, Urrutia AO, Székely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Milá B, Ketterson ED, Fidler AE, Friis G, Parody-Merino ÁM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li Q, Yang H, Wang J, Lei F, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang G. PMID: 33833441; PMCID: PMC8081657.
      View in: PubMed   Mentions: 1     Fields:    
    39. Characterization of 29 polymorphic microsatellite markers developed by genomic screening of Sumatran rhinoceros (Dicerorhinus sumatrensis). BMC Res Notes. 2021 Mar 26; 14(1):119. Brandt JR, Saidah SH, Zhao K, Ishida Y, Apriyana I, Ryder OA, Ramono W, Sudoyo H, Suryadi H, Van Coeverden de Groot PJ, Roca AL. PMID: 33771210; PMCID: PMC7995689.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    40. Rewinding Extinction in the Northern White Rhinoceros: Genetically Diverse Induced Pluripotent Stem Cell Bank for Genetic Rescue. Stem Cells Dev. 2021 02; 30(4):177-189. Korody ML, Ford SM, Nguyen TD, Pivaroff CG, Valiente-Alandi I, Peterson SE, Ryder OA, Loring JF. PMID: 33406994; PMCID: PMC7891310.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    41. Platypus and echidna genomes reveal mammalian biology and evolution. Nature. 2021 04; 592(7856):756-762. Zhou Y, Shearwin-Whyatt L, Li J, Song Z, Hayakawa T, Stevens D, Fenelon JC, Peel E, Cheng Y, Pajpach F, Bradley N, Suzuki H, Nikaido M, Damas J, Daish T, Perry T, Zhu Z, Geng Y, Rhie A, Sims Y, Wood J, Haase B, Mountcastle J, Fedrigo O, Li Q, Yang H, Wang J, Johnston SD, Phillippy AM, Howe K, Jarvis ED, Ryder OA, Kaessmann H, Donnelly P, Korlach J, Lewin HA, Graves J, Belov K, Renfree MB, Grutzner F, Zhou Q, Zhang G. PMID: 33408411; PMCID: PMC8081666.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    42. Diverse phylogenomic datasets uncover a concordant scenario of laurasiatherian interordinal relationships. Mol Phylogenet Evol. 2021 04; 157:107065. Lv X, Hu J, Hu Y, Li Y, Xu D, Ryder OA, Irwin DM, Yu L. PMID: 33387649.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    43. Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics. Genes (Basel). 2020 12 10; 11(12). Beklemisheva VR, Perelman PL, Lemskaya NA, Proskuryakova AA, Serdyukova NA, Burkanov VN, Gorshunov MB, Ryder O, Thompson M, Lento G, O'Brien SJ, Graphodatsky AS. PMID: 33321928; PMCID: PMC7763226.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    44. Reference genome and demographic history of the most endangered marine mammal, the vaquita. Mol Ecol Resour. 2021 May; 21(4):1008-1020. Morin PA, Archer FI, Avila CD, Balacco JR, Bukhman YV, Chow W, Fedrigo O, Formenti G, Fronczek JA, Fungtammasan A, Gulland FMD, Haase B, Peter Heide-Jorgensen M, Houck ML, Howe K, Misuraca AC, Mountcastle J, Musser W, Paez S, Pelan S, Phillippy A, Rhie A, Robinson J, Rojas-Bracho L, Rowles TK, Ryder OA, Smith CR, Stevenson S, Taylor BL, Teilmann J, Torrance J, Wells RS, Westgate AJ, Jarvis ED. PMID: 33089966; PMCID: PMC8247363.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    45. Dense sampling of bird diversity increases power of comparative genomics. Nature. 2020 11; 587(7833):252-257. Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Andreu-Sánchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Ribeiro ÂM, Eckhart L, Fjeldså J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jønsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, González-Solís J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalén L, Urrutia AO, Székely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Milá B, Ketterson ED, Fidler AE, Friis G, Parody-Merino ÁM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li Q, Yang H, Wang J, Lei F, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang G. PMID: 33177665; PMCID: PMC7759463.
      View in: PubMed   Mentions: 121     Fields:    Translation:HumansAnimals
    46. Interspecific Gene Flow and the Evolution of Specialization in Black and White Rhinoceros. Mol Biol Evol. 2020 11 01; 37(11):3105-3117. Moodley Y, Westbury MV, Russo IM, Gopalakrishnan S, Rakotoarivelo A, Olsen RA, Prost S, Tunstall T, Ryder OA, Dalén L, Bruford MW. PMID: 32585004.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    47. Publisher Correction: The tuatara genome reveals ancient features of amniote evolution. Nature. 2020 Sep; 585(7823):E3. Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, Martin FJ, Flicek P, Petersen B, Kang L, Michalak P, Buckley TR, Wilson M, Cheng Y, Miller H, Schott RK, Jordan MD, Newcomb RD, Arroyo JI, Valenzuela N, Hore TA, Renart J, Peona V, Peart CR, Warmuth VM, Zeng L, Kortschak RD, Raison JM, Zapata VV, Wu Z, Santesmasses D, Mariotti M, Guigó R, Rupp SM, Twort VG, Dussex N, Taylor H, Abe H, Bond DM, Paterson JM, Mulcahy DG, Gonzalez VL, Barbieri CG, DeMeo DP, Pabinger S, Van Stijn T, Clarke S, Ryder O, Edwards SV, Salzberg SL, Anderson L, Nelson N, Stone C, Ngatiwai Trust Board. PMID: 32811988; PMCID: PMC7962574.
      View in: PubMed   Mentions:    Fields:    
    48. Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proc Natl Acad Sci U S A. 2020 09 08; 117(36):22311-22322. Damas J, Hughes GM, Keough KC, Painter CA, Persky NS, Corbo M, Hiller M, Koepfli KP, Pfenning AR, Zhao H, Genereux DP, Swofford R, Pollard KS, Ryder OA, Nweeia MT, Lindblad-Toh K, Teeling EC, Karlsson EK, Lewin HA. PMID: 32826334; PMCID: PMC7486773.
      View in: PubMed   Mentions: 341     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    49. Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros. Curr Biol. 2020 10 05; 30(19):3871-3879.e7. Lord E, Dussex N, Kierczak M, Díez-Del-Molino D, Ryder OA, Stanton DWG, Gilbert MTP, Sánchez-Barreiro F, Zhang G, Sinding MS, Lorenzen ED, Willerslev E, Protopopov A, Shidlovskiy F, Fedorov S, Bocherens H, Nathan SKSS, Goossens B, van der Plicht J, Chan YL, Prost S, Potapova O, Kirillova I, Lister AM, Heintzman PD, Kapp JD, Shapiro B, Vartanyan S, Götherström A, Dalén L. PMID: 32795436.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    50. The tuatara genome reveals ancient features of amniote evolution. Nature. 2020 08; 584(7821):403-409. Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, Martin FJ, Flicek P, Petersen B, Kang L, Michalak P, Buckley TR, Wilson M, Cheng Y, Miller H, Schott RK, Jordan MD, Newcomb RD, Arroyo JI, Valenzuela N, Hore TA, Renart J, Peona V, Peart CR, Warmuth VM, Zeng L, Kortschak RD, Raison JM, Zapata VV, Wu Z, Santesmasses D, Mariotti M, Guigó R, Rupp SM, Twort VG, Dussex N, Taylor H, Abe H, Bond DM, Paterson JM, Mulcahy DG, Gonzalez VL, Barbieri CG, DeMeo DP, Pabinger S, Van Stijn T, Clarke S, Ryder O, Edwards SV, Salzberg SL, Anderson L, Nelson N, Stone C, Ngatiwai Trust Board. PMID: 32760000; PMCID: PMC7116210.
      View in: PubMed   Mentions: 48     Fields:    Translation:Animals
    51. Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels. Genome Biol Evol. 2020 06 01; 12(6):842-859. Vegesna R, Tomaszkiewicz M, Ryder OA, Campos-Sánchez R, Medvedev P, DeGiorgio M, Makova KD. PMID: 32374870; PMCID: PMC7313670.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    52. A draft genome assembly of spotted hyena, Crocuta crocuta. Sci Data. 2020 04 28; 7(1):126. Yang C, Li F, Xiong Z, Koepfli KP, Ryder O, Perelman P, Li Q, Zhang G. PMID: 32345970; PMCID: PMC7189233.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    53. Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates. bioRxiv. 2020 Apr 18. Damas J, Hughes GM, Keough KC, Painter CA, Persky NS, Corbo M, Hiller M, Koepfli KP, Pfenning AR, Zhao H, Genereux DP, Swofford R, Pollard KS, Ryder OA, Nweeia MT, Lindblad-Toh K, Teeling EC, Karlsson EK, Lewin HA. PMID: 32511356; PMCID: PMC7263403.
      View in: PubMed   Mentions:
    54. Assessing possible hybridization among managed Nubian ibex in North America. Zoo Biol. 2020 Mar; 39(2):121-128. Putnam AS, Nguyen TN, Mott A, Korody ML, Ryder OA. PMID: 31833594.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    55. Contemporary Demographic Reconstruction Methods Are Robust to Genome Assembly Quality: A Case Study in Tasmanian Devils. Mol Biol Evol. 2019 12 01; 36(12):2906-2921. Patton AH, Margres MJ, Stahlke AR, Hendricks S, Lewallen K, Hamede RK, Ruiz-Aravena M, Ryder O, McCallum HI, Jones ME, Hohenlohe PA, Storfer A. PMID: 31424552; PMCID: PMC6878949.
      View in: PubMed   Mentions: 28     Fields:    Translation:Animals
    56. An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi). Gigascience. 2019 08 01; 8(8). Farré M, Li Q, Darolti I, Zhou Y, Damas J, Proskuryakova AA, Kulemzina AI, Chemnick LG, Kim J, Ryder OA, Ma J, Graphodatsky AS, Zhang G, Larkin DM, Lewin HA. PMID: 31367745; PMCID: PMC6669057.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    57. Precision nomenclature for the new genomics. Gigascience. 2019 08 01; 8(8). Lewin HA, Graves JAM, Ryder OA, Graphodatsky AS, O'Brien SJ. PMID: 31437278; PMCID: PMC6705538.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    58. Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nat Ecol Evol. 2019 08; 3(8):1241-1252. Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR, Ciofi C, Kwok PY, Pollard KS, Bruneau BG. PMID: 31358948; PMCID: PMC6668926.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    59. Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits. Science. 2019 06 21; 364(6446). Chen L, Qiu Q, Jiang Y, Wang K, Lin Z, Li Z, Bibi F, Yang Y, Wang J, Nie W, Su W, Liu G, Li Q, Fu W, Pan X, Liu C, Yang J, Zhang C, Yin Y, Wang Y, Zhao Y, Zhang C, Wang Z, Qin Y, Liu W, Wang B, Ren Y, Zhang R, Zeng Y, da Fonseca RR, Wei B, Li R, Wan W, Zhao R, Zhu W, Wang Y, Duan S, Gao Y, Zhang YE, Chen C, Hvilsom C, Epps CW, Chemnick LG, Dong Y, Mirarab S, Siegismund HR, Ryder OA, Gilbert MTP, Lewin HA, Zhang G, Heller R, Wang W. PMID: 31221828.
      View in: PubMed   Mentions: 136     Fields:    Translation:Animals
    60. Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations. G3 (Bethesda). 2019 06 05; 9(6):1785-1793. Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Pinto PV, Ferrand N, Maldonado JE, Ferrie GM, Chemnick L, Ryder OA, Johnson WE, Comizzoli P, O'Brien SJ, Pukazhenthi BS. PMID: 31000506; PMCID: PMC6553546.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    61. Data gaps and opportunities for comparative and conservation biology. Proc Natl Acad Sci U S A. 2019 05 07; 116(19):9658-9664. Conde DA, Staerk J, Colchero F, da Silva R, Schöley J, Baden HM, Jouvet L, Fa JE, Syed H, Jongejans E, Meiri S, Gaillard JM, Chamberlain S, Wilcken J, Jones OR, Dahlgren JP, Steiner UK, Bland LM, Gomez-Mestre I, Lebreton JD, González Vargas J, Flesness N, Canudas-Romo V, Salguero-Gómez R, Byers O, Berg TB, Scheuerlein A, Devillard S, Schigel DS, Ryder OA, Possingham HP, Baudisch A, Vaupel JW. PMID: 31004061; PMCID: PMC6511006.
      View in: PubMed   Mentions: 31     Fields:    Translation:Animals
    62. Editorial. J Hered. 2019 03 05; 110(2):257-259. Ryder OA. PMID: 31222255.
      View in: PubMed   Mentions:    Fields:    
    63. Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. Genome Res. 2019 04; 29(4):576-589. Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman PL, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, Ryder OA, Graphodatsky AS, Ma J, Lewin HA, Larkin DM. PMID: 30760546; PMCID: PMC6442394.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    64. A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert. Gigascience. 2019 02 01; 8(2). Farré M, Li Q, Zhou Y, Damas J, Chemnick LG, Kim J, Ryder OA, Ma J, Zhang G, Larkin DM, Lewin HA. PMID: 30649288; PMCID: PMC6351727.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    65. Contrasting evolutionary history, anthropogenic declines and genetic contact in the northern and southern white rhinoceros (Ceratotherium simum). Proc Biol Sci. 2018 11 07; 285(1890). Moodley Y, Russo IM, Robovský J, Dalton DL, Kotzé A, Smith S, Stejskal J, Ryder OA, Hermes R, Walzer C, Bruford MW. PMID: 30404873; PMCID: PMC6235034.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    66. A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii's Last Remaining Crow Species. Genes (Basel). 2018 Aug 01; 9(8). Sutton JT, Helmkampf M, Steiner CC, Bellinger MR, Korlach J, Hall R, Baybayan P, Muehling J, Gu J, Kingan S, Masuda BM, Ryder OA. PMID: 30071683; PMCID: PMC6115840.
      View in: PubMed   Mentions: 6     Fields:    
    67. Genetic Structure and Diversity Among Historic and Modern Populations of the Sumatran Rhinoceros (Dicerorhinus sumatrensis). J Hered. 2018 06 27; 109(5):553-565. Brandt JR, van Coeverden de Groot PJ, Witt KE, Engelbrektsson PK, Helgen KM, Malhi RS, Ryder OA, Roca AL. PMID: 29684146.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    68. The Case of X and Y Localization of Nucleolus Organizer Regions (NORs) in Tragulus javanicus (Cetartiodactyla, Mammalia). Genes (Basel). 2018 Jun 20; 9(6). Proskuryakova AA, Kulemzina AI, Perelman PL, Serdukova NA, Ryder OA, Graphodatsky AS. PMID: 29925822; PMCID: PMC6027365.
      View in: PubMed   Mentions: 2     Fields:    
    69. Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells. Genome Res. 2018 06; 28(6):780-788. Tunstall T, Kock R, Vahala J, Diekhans M, Fiddes I, Armstrong J, Paten B, Ryder OA, Steiner CC. PMID: 29798851; PMCID: PMC5991516.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    70. A comprehensive genomic history of extinct and living elephants. Proc Natl Acad Sci U S A. 2018 03 13; 115(11):E2566-E2574. Palkopoulou E, Lipson M, Mallick S, Nielsen S, Rohland N, Baleka S, Karpinski E, Ivancevic AM, To TH, Kortschak RD, Raison JM, Qu Z, Chin TJ, Alt KW, Claesson S, Dalén L, MacPhee RDE, Meller H, Roca AL, Ryder OA, Heiman D, Young S, Breen M, Williams C, Aken BL, Ruffier M, Karlsson E, Johnson J, Di Palma F, Alfoldi J, Adelson DL, Mailund T, Munch K, Lindblad-Toh K, Hofreiter M, Poinar H, Reich D. PMID: 29483247; PMCID: PMC5856550.
      View in: PubMed   Mentions: 56     Fields:    Translation:Animals
    71. Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Nat Ecol Evol. 2018 04; 2(4):659-668. Zepeda Mendoza ML, Xiong Z, Escalera-Zamudio M, Runge AK, Thézé J, Streicker D, Frank HK, Loza-Rubio E, Liu S, Ryder OA, Samaniego Castruita JA, Katzourakis A, Pacheco G, Taboada B, Löber U, Pybus OG, Li Y, Rojas-Anaya E, Bohmann K, Carmona Baez A, Arias CF, Liu S, Greenwood AD, Bertelsen MF, White NE, Bunce M, Zhang G, Sicheritz-Pontén T, Gilbert MPT. PMID: 29459707; PMCID: PMC5868727.
      View in: PubMed   Mentions: 60     Fields:    Translation:Animals
    72. Viable Cell Culture Banking for Biodiversity Characterization and Conservation. Annu Rev Anim Biosci. 2018 02 15; 6:83-98. Ryder OA, Onuma M. PMID: 29447472.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    73. Draft genome of the milu (Elaphurus davidianus). Gigascience. 2018 02 01; 7(2). Zhang C, Chen L, Zhou Y, Wang K, Chemnick LG, Ryder OA, Wang W, Zhang G, Qiu Q. PMID: 29267854; PMCID: PMC5824821.
      View in: PubMed   Mentions: 12     Fields:    Translation:Animals
    74. X Chromosome Evolution in Cetartiodactyla. Genes (Basel). 2017 Aug 31; 8(9). Proskuryakova AA, Kulemzina AI, Perelman PL, Makunin AI, Larkin DM, Farré M, Kukekova AV, Lynn Johnson J, Lemskaya NA, Beklemisheva VR, Roelke-Parker ME, Bellizzi J, Ryder OA, O'Brien SJ, Graphodatsky AS. PMID: 28858207; PMCID: PMC5615350.
      View in: PubMed   Mentions: 13     Fields:    
    75. Large numbers of vertebrates began rapid population decline in the late 19th century. Proc Natl Acad Sci U S A. 2016 12 06; 113(49):14079-14084. Li H, Xiang-Yu J, Dai G, Gu Z, Ming C, Yang Z, Ryder OA, Li WH, Fu YX, Zhang YP. PMID: 27872315; PMCID: PMC5150392.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    76. Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation. Nat Genet. 2016 08; 48(8):947-52. Yu L, Wang GD, Ruan J, Chen YB, Yang CP, Cao X, Wu H, Liu YH, Du ZL, Wang XP, Yang J, Cheng SC, Zhong L, Wang L, Wang X, Hu JY, Fang L, Bai B, Wang KL, Yuan N, Wu SF, Li BG, Zhang JG, Yang YQ, Zhang CL, Long YC, Li HS, Yang JY, Irwin DM, Ryder OA, Li Y, Wu CI, Zhang YP. PMID: 27399969.
      View in: PubMed   Mentions: 58     Fields:    Translation:AnimalsCells
    77. Applying SNP-Derived Molecular Coancestry Estimates to Captive Breeding Programs. J Hered. 2016 Sep; 107(5):403-12. Ivy JA, Putnam AS, Navarro AY, Gurr J, Ryder OA. PMID: 27208150.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    78. Rewinding the process of mammalian extinction. Zoo Biol. 2016 Jul; 35(4):280-92. Saragusty J, Diecke S, Drukker M, Durrant B, Friedrich Ben-Nun I, Galli C, Göritz F, Hayashi K, Hermes R, Holtze S, Johnson S, Lazzari G, Loi P, Loring JF, Okita K, Renfree MB, Seet S, Voracek T, Stejskal J, Ryder OA, Hildebrandt TB. PMID: 27142508.
      View in: PubMed   Mentions: 31     Fields:    Translation:Animals
    79. The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons). Int J Genomics. 2016; 2016:5613862. Nuijten RJ, Bosse M, Crooijmans RP, Madsen O, Schaftenaar W, Ryder OA, Groenen MA, Megens HJ. PMID: 27069913; PMCID: PMC4812450.
      View in: PubMed   Mentions: 3  
    80. A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y. Genome Res. 2016 Apr; 26(4):530-40. Tomaszkiewicz M, Rangavittal S, Cechova M, Campos Sanchez R, Fescemyer HW, Harris R, Ye D, O'Brien PC, Chikhi R, Ryder OA, Ferguson-Smith MA, Medvedev P, Makova KD. PMID: 26934921; PMCID: PMC4817776.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansAnimalsCells
    81. Derivation of induced pluripotent stem cells from orangutan skin fibroblasts. BMC Res Notes. 2015 Oct 16; 8:577. Ramaswamy K, Yik WY, Wang XM, Oliphant EN, Lu W, Shibata D, Ryder OA, Hacia JG. PMID: 26475477; PMCID: PMC4609060.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    82. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Curr Biol. 2015 Oct 05; 25(19):2577-83. Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, Gamba C, Lorente-Galdos B, Polani S, Steiner C, Neuditschko M, Jagannathan V, Feh C, Greenblatt CL, Ludwig A, Abramson NI, Zimmermann W, Schafberg R, Tikhonov A, Sicheritz-Ponten T, Willerslev E, Marques-Bonet T, Ryder OA, McCue M, Rieder S, Leeb T, Slatkin M, Orlando L. PMID: 26412128; PMCID: PMC5104162.
      View in: PubMed   Mentions: 71     Fields:    Translation:Animals
    83. A Road Map for 21st Century Genetic Restoration: Gene Pool Enrichment of the Black-Footed Ferret. J Hered. 2015 Sep-Oct; 106(5):581-92. Wisely SM, Ryder OA, Santymire RM, Engelhardt JF, Novak BJ. PMID: 26304983; PMCID: PMC4567841.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    84. Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations. Genome Res. 2015 Jul; 25(7):970-81. Bosse M, Megens HJ, Madsen O, Crooijmans RP, Ryder OA, Austerlitz F, Groenen MA, de Cara MA. PMID: 26063737; PMCID: PMC4484394.
      View in: PubMed   Mentions: 38     Fields:    Translation:Animals
    85. Chromosomal variation and perinatal mortality in San Diego zoo Soemmerring's gazelles. Zoo Biol. 2015 Jul-Aug; 34(4):374-84. Steiner CC, Charter SJ, Goddard N, Davis H, Brandt M, Houck ML, Ryder OA. PMID: 26011774.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    86. Generation of Induced Pluripotent Stem Cells from Mammalian Endangered Species. Methods Mol Biol. 2015; 1330:101-9. Ben-Nun IF, Montague SC, Houck ML, Ryder O, Loring JF. PMID: 26621593.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    87. Inference of gorilla demographic and selective history from whole-genome sequence data. Mol Biol Evol. 2015 Mar; 32(3):600-12. McManus KF, Kelley JL, Song S, Veeramah KR, Woerner AE, Stevison LS, Ryder OA, Ape Genome Project G, Kidd JM, Wall JD, Bustamante CD, Hammer MF. PMID: 25534031; PMCID: PMC4327160.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimals
    88. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science. 2014 Dec 12; 346(6215):1320-31. Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G. PMID: 25504713; PMCID: PMC4405904.
      View in: PubMed   Mentions: 630     Fields:    Translation:AnimalsCells
    89. Comparative genomics reveals insights into avian genome evolution and adaptation. Science. 2014 Dec 12; 346(6215):1311-20. Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J, Avian Genome Consortium, Jarvis ED, Gilbert MT, Wang J. PMID: 25504712; PMCID: PMC4390078.
      View in: PubMed   Mentions: 461     Fields:    Translation:AnimalsCells
    90. The birds of Genome10K. Gigascience. 2014; 3(1):32. OBrien SJ, Haussler D, Ryder O. PMID: 25685332; PMCID: PMC4326320.
      View in: PubMed   Mentions: 7     Fields:    
    91. Evolutionary and functional novelty of pancreatic ribonuclease: a study of Musteloidea (order Carnivora). Sci Rep. 2014 May 27; 4:5070. Liu J, Wang XP, Cho S, Lim BK, Irwin DM, Ryder OA, Zhang YP, Yu L. PMID: 24861105; PMCID: PMC5381406.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    92. Molecular phylogeny and chromosomal evolution of Alcelaphini (Antilopinae). J Hered. 2014 May-Jun; 105(3):324-33. Steiner CC, Charter SJ, Houck ML, Ryder OA. PMID: 24516191.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    93. Great ape genetic diversity and population history. Nature. 2013 Jul 25; 499(7459):471-5. Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T. PMID: 23823723; PMCID: PMC3822165.
      View in: PubMed   Mentions: 365     Fields:    Translation:HumansAnimals
    94. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature. 2013 Jul 04; 499(7456):74-8. Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E. PMID: 23803765.
      View in: PubMed   Mentions: 286     Fields:    Translation:Animals
    95. Characterization of Prdm9 in equids and sterility in mules. PLoS One. 2013; 8(4):e61746. Steiner CC, Ryder OA. PMID: 23613924; PMCID: PMC3632555.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    96. Diverse captive non-human primates with phytanic acid-deficient diets rich in plant products have substantial phytanic acid levels in their red blood cells. Lipids Health Dis. 2013 Feb 04; 12:10. Moser AB, Hey J, Dranchak PK, Karaman MW, Zhao J, Cox LA, Ryder OA, Hacia JG. PMID: 23379307; PMCID: PMC3571895.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    97. Conservation genomics of threatened animal species. Annu Rev Anim Biosci. 2013 Jan; 1:261-81. Steiner CC, Putnam AS, Hoeck PE, Ryder OA. PMID: 25387020.
      View in: PubMed   Mentions: 48     Fields:    Translation:Animals
    98. Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix. PLoS One. 2012; 7(11):e49521. Springer MS, Meredith RW, Gatesy J, Emerling CA, Park J, Rabosky DL, Stadler T, Steiner C, Ryder OA, Janecka JE, Fisher CA, Murphy WJ. PMID: 23166696; PMCID: PMC3500307.
      View in: PubMed   Mentions: 111     Fields:    Translation:Animals
    99. Incorporating indels as phylogenetic characters: impact for interfamilial relationships within Arctoidea (Mammalia: Carnivora). Mol Phylogenet Evol. 2013 Mar; 66(3):748-56. Luan PT, Ryder OA, Davis H, Zhang YP, Yu L. PMID: 23147269.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    100. IOD in rhinos--epidemiology group report: report from the Epidemiology Working Group of the International Workshop on Iron Overload Disorder in Browsing Rhinoceros (February 2011). J Zoo Wildl Med. 2012 Sep; 43(3 Suppl):S114-6. Dennis P, Ellis S, Mellen J, Lee P, Olea-Popelka F, Petric A, Ryder O. PMID: 23156714.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    101. Molecular phylogeny of extant equids and effects of ancestral polymorphism in resolving species-level phylogenies. Mol Phylogenet Evol. 2012 Nov; 65(2):573-81. Steiner CC, Mitelberg A, Tursi R, Ryder OA. PMID: 22846684.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    102. Tissue sampling methods and standards for vertebrate genomics. Gigascience. 2012 Jul 12; 1(1):8. Wong PB, Wiley EO, Johnson WE, Ryder OA, O'Brien SJ, Haussler D, Koepfli KP, Houck ML, Perelman P, Mastromonaco G, Bentley AC, Venkatesh B, Zhang YP, Murphy RW, G10KCOS. PMID: 23587255; PMCID: PMC3626508.
      View in: PubMed   Mentions: 19     Fields:    
    103. Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers. Mob DNA. 2012 Apr 30; 3:8. Walker JA, Konkel MK, Ullmer B, Monceaux CP, Ryder OA, Hubley R, Smit AF, Batzer MA. PMID: 22541534; PMCID: PMC3357318.
      View in: PubMed   Mentions: 8  
    104. The fishes of Genome 10K. Mar Genomics. 2012 Sep; 7:3-6. Bernardi G, Wiley EO, Mansour H, Miller MR, Orti G, Haussler D, O'Brien SJ, Ryder OA, Venkatesh B. PMID: 22897955.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    105. Insights into hominid evolution from the gorilla genome sequence. Nature. 2012 Mar 07; 483(7388):169-75. Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, Xue Y, Yngvadottir B, Alkan C, Andersen LN, Ayub Q, Ball EV, Beal K, Bradley BJ, Chen Y, Clee CM, Fitzgerald S, Graves TA, Gu Y, Heath P, Heger A, Karakoc E, Kolb-Kokocinski A, Laird GK, Lunter G, Meader S, Mort M, Mullikin JC, Munch K, O'Connor TD, Phillips AD, Prado-Martinez J, Rogers AS, Sajjadian S, Schmidt D, Shaw K, Simpson JT, Stenson PD, Turner DJ, Vigilant L, Vilella AJ, Whitener W, Zhu B, Cooper DN, de Jong P, Dermitzakis ET, Eichler EE, Flicek P, Goldman N, Mundy NI, Ning Z, Odom DT, Ponting CP, Quail MA, Ryder OA, Searle SM, Warren WC, Wilson RK, Schierup MH, Rogers J, Tyler-Smith C, Durbin R. PMID: 22398555; PMCID: PMC3303130.
      View in: PubMed   Mentions: 289     Fields:    Translation:HumansAnimalsCells
    106. A high density SNP array for the domestic horse and extant Perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies. PLoS Genet. 2012 Jan; 8(1):e1002451. McCue ME, Bannasch DL, Petersen JL, Gurr J, Bailey E, Binns MM, Distl O, Guérin G, Hasegawa T, Hill EW, Leeb T, Lindgren G, Penedo MC, Røed KH, Ryder OA, Swinburne JE, Tozaki T, Valberg SJ, Vaudin M, Lindblad-Toh K, Wade CM, Mickelson JR. PMID: 22253606; PMCID: PMC3257288.
      View in: PubMed   Mentions: 96     Fields:    Translation:Animals
    107. Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science. 2011 Oct 28; 334(6055):521-4. Meredith RW, Janecka JE, Gatesy J, Ryder OA, Fisher CA, Teeling EC, Goodbla A, Eizirik E, Simão TL, Stadler T, Rabosky DL, Honeycutt RL, Flynn JJ, Ingram CM, Steiner C, Williams TL, Robinson TJ, Burk-Herrick A, Westerman M, Ayoub NA, Springer MS, Murphy WJ. PMID: 21940861.
      View in: PubMed   Mentions: 496     Fields:    Translation:Animals
    108. Induced pluripotent stem cells from highly endangered species. Nat Methods. 2011 Sep 04; 8(10):829-31. Ben-Nun IF, Montague SC, Houck ML, Tran HT, Garitaonandia I, Leonardo TR, Wang YC, Charter SJ, Laurent LC, Ryder OA, Loring JF. PMID: 21892153.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    109. Copy number variation analysis in the great apes reveals species-specific patterns of structural variation. Genome Res. 2011 Oct; 21(10):1626-39. Gazave E, Darré F, Morcillo-Suarez C, Petit-Marty N, Carreño A, Marigorta UM, Ryder OA, Blancher A, Rocchi M, Bosch E, Baker C, Marquès-Bonet T, Eichler EE, Navarro A. PMID: 21824994; PMCID: PMC3202280.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimalsCells
    110. A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses. Genome Biol Evol. 2011; 3:1096-106. Goto H, Ryder OA, Fisher AR, Schultz B, Kosakovsky Pond SL, Nekrutenko A, Makova KD. PMID: 21803766; PMCID: PMC3194890.
      View in: PubMed   Mentions: 23     Fields:    Translation:Animals
    111. Human and great ape red blood cells differ in plasmalogen levels and composition. Lipids Health Dis. 2011 Jun 17; 10:101. Moser AB, Steinberg SJ, Watkins PA, Moser HW, Ramaswamy K, Siegmund KD, Lee DR, Ely JJ, Ryder OA, Hacia JG. PMID: 21679470; PMCID: PMC3129581.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    112. Comparative biology of mammalian telomeres: hypotheses on ancestral states and the roles of telomeres in longevity determination. Aging Cell. 2011 Oct; 10(5):761-8. Gomes NM, Ryder OA, Houck ML, Charter SJ, Walker W, Forsyth NR, Austad SN, Venditti C, Pagel M, Shay JW, Wright WE. PMID: 21518243; PMCID: PMC3387546.
      View in: PubMed   Mentions: 192     Fields:    Translation:HumansAnimalsCells
    113. On the phylogeny of Mustelidae subfamilies: analysis of seventeen nuclear non-coding loci and mitochondrial complete genomes. BMC Evol Biol. 2011 Apr 10; 11:92. Yu L, Peng D, Liu J, Luan P, Liang L, Lee H, Lee M, Ryder OA, Zhang Y. PMID: 21477367; PMCID: PMC3088541.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    114. Chromosome painting in Tragulidae facilitates the reconstruction of Ruminantia ancestral karyotype. Chromosome Res. 2011 May; 19(4):531-9. Kulemzina AI, Yang F, Trifonov VA, Ryder OA, Ferguson-Smith MA, Graphodatsky AS. PMID: 21445689.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    115. Comparative and demographic analysis of orang-utan genomes. Nature. 2011 Jan 27; 469(7331):529-33. Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK. PMID: 21270892; PMCID: PMC3060778.
      View in: PubMed   Mentions: 245     Fields:    Translation:HumansAnimalsCells
    116. Phylogenetic utility of nuclear introns in interfamilial relationships of Caniformia (order Carnivora). Syst Biol. 2011 Mar; 60(2):175-87. Yu L, Luan PT, Jin W, Ryder OA, Chemnick LG, Davis HA, Zhang YP. PMID: 21252386.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    117. Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Res. 2011 Jan; 21(1):137-45. Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M. PMID: 21081712; PMCID: PMC3012921.
      View in: PubMed   Mentions: 46     Fields:    Translation:AnimalsCells
    118. Species identification and chromosome variation of captive two-toed sloths. Zoo Biol. 2011 Nov-Dec; 30(6):623-35. Steiner CC, Houck ML, Ryder OA. PMID: 22147591.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    119. Identification of differences in human and great ape phytanic acid metabolism that could influence gene expression profiles and physiological functions. BMC Physiol. 2010 Oct 08; 10:19. Watkins PA, Moser AB, Toomer CB, Steinberg SJ, Moser HW, Karaman MW, Ramaswamy K, Siegmund KD, Lee DR, Ely JJ, Ryder OA, Hacia JG. PMID: 20932325; PMCID: PMC2964658.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    120. Detection of two distinct forms of apoC-I in great apes. Comp Biochem Physiol Part D Genomics Proteomics. 2010 Mar; 5(1):73-9. Puppione DL, Ryan CM, Bassilian S, Souda P, Xiao X, Ryder OA, Whitelegge JP. PMID: 20209111; PMCID: PMC2830554.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    121. Molecular cytogenetics of the california condor: evolutionary and conservation implications. Cytogenet Genome Res. 2009; 127(1):26-32. Modi WS, Romanov M, Green ED, Ryder O. PMID: 20051671; PMCID: PMC2842169.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    122. The sequence and de novo assembly of the giant panda genome. Nature. 2010 Jan 21; 463(7279):311-7. Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, Li H, Jian M, Li J, Zhang Z, Nielsen R, Li D, Gu W, Yang Z, Xuan Z, Ryder OA, Leung FC, Zhou Y, Cao J, Sun X, Fu Y, Fang X, Guo X, Wang B, Hou R, Shen F, Mu B, Ni P, Lin R, Qian W, Wang G, Yu C, Nie W, Wang J, Wu Z, Liang H, Min J, Wu Q, Cheng S, Ruan J, Wang M, Shi Z, Wen M, Liu B, Ren X, Zheng H, Dong D, Cook K, Shan G, Zhang H, Kosiol C, Xie X, Lu Z, Zheng H, Li Y, Steiner CC, Lam TT, Lin S, Zhang Q, Li G, Tian J, Gong T, Liu H, Zhang D, Fang L, Ye C, Zhang J, Hu W, Xu A, Ren Y, Zhang G, Bruford MW, Li Q, Ma L, Guo Y, An N, Hu Y, Zheng Y, Shi Y, Li Z, Liu Q, Chen Y, Zhao J, Qu N, Zhao S, Tian F, Wang X, Wang H, Xu L, Liu X, Vinar T, Wang Y, Lam TW, Yiu SM, Liu S, Zhang H, Li D, Huang Y, Wang X, Yang G, Jiang Z, Wang J, Qin N, Li L, Li J, Bolund L, Kristiansen K, Wong GK, Olson M, Zhang X, Li S, Yang H, Wang J, Wang J. PMID: 20010809; PMCID: PMC3951497.
      View in: PubMed   Mentions: 553     Fields:    Translation:HumansAnimalsCells
    123. Phylogeny of horse chromosome 5q in the genus Equus and centromere repositioning. Cytogenet Genome Res. 2009; 126(1-2):165-72. Piras FM, Nergadze SG, Poletto V, Cerutti F, Ryder OA, Leeb T, Raimondi E, Giulotto E. PMID: 20016166.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    124. Mass spectral analyses of the two major apolipoproteins of great ape high density lipoproteins. Comp Biochem Physiol Part D Genomics Proteomics. 2009 12; 4(4):305-309. Puppione DL, Della Donna L, Laganowsky AD, Bassilian S, Souda P, Ryder OA, Whitelegge JP. PMID: 21298813; PMCID: PMC2776726.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    125. Genome sequence, comparative analysis, and population genetics of the domestic horse. Science. 2009 Nov 06; 326(5954):865-7. Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, Imsland F, Lear TL, Adelson DL, Bailey E, Bellone RR, Blöcker H, Distl O, Edgar RC, Garber M, Leeb T, Mauceli E, MacLeod JN, Penedo MC, Raison JM, Sharpe T, Vogel J, Andersson L, Antczak DF, Biagi T, Binns MM, Chowdhary BP, Coleman SJ, Della Valle G, Fryc S, Guérin G, Hasegawa T, Hill EW, Jurka J, Kiialainen A, Lindgren G, Liu J, Magnani E, Mickelson JR, Murray J, Nergadze SG, Onofrio R, Pedroni S, Piras MF, Raudsepp T, Rocchi M, Røed KH, Ryder OA, Searle S, Skow L, Swinburne JE, Syvänen AC, Tozaki T, Valberg SJ, Vaudin M, White JR, Zody MC, Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team, Lander ES, Lindblad-Toh K. PMID: 19892987; PMCID: PMC3785132.
      View in: PubMed   Mentions: 327     Fields:    Translation:HumansAnimalsCells
    126. Molecular decay of the tooth gene Enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals. PLoS Genet. 2009 Sep; 5(9):e1000634. Meredith RW, Gatesy J, Murphy WJ, Ryder OA, Springer MS. PMID: 19730686; PMCID: PMC2728479.
      View in: PubMed   Mentions: 60     Fields:    Translation:AnimalsCells
    127. Forests of the night: refugia of genetic diversity in wild tigers. PLoS Genet. 2009 Aug; 5(8):e1000603. Ryder OA. PMID: 19680440; PMCID: PMC2716535.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    128. The value of avian genomics to the conservation of wildlife. BMC Genomics. 2009 Jul 14; 10 Suppl 2:S10. Romanov MN, Tuttle EM, Houck ML, Modi WS, Chemnick LG, Korody ML, Mork EM, Otten CA, Renner T, Jones KC, Dandekar S, Papp JC, Da Y, NISC Comparative Sequencing Program, Green ED, Magrini V, Hickenbotham MT, Glasscock J, McGrath S, Mardis ER, Ryder OA. PMID: 19607652; PMCID: PMC2966331.
      View in: PubMed   Mentions: 33     Fields:    Translation:AnimalsCells
    129. Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene. 2009 Dec 15; 448(2):242-9. Li J, Han K, Xing J, Kim HS, Rogers J, Ryder OA, Disotell T, Yue B, Batzer MA. PMID: 19497354; PMCID: PMC2783879.
      View in: PubMed   Mentions: 53     Fields:    Translation:AnimalsCells
    130. Isolation and characterization of 23 polymorphic microsatellite loci for a West Indian iguana (Cyclura pinguis) from the British Virgin Islands. Mol Ecol Resour. 2009 Sep; 9(5):1412-4. Lau J, Alberts AC, Chemnick LG, Gerber GP, Jones KC, Mitchell AA, Ryder OA. PMID: 21564923.
      View in: PubMed   Mentions: 5     Fields:    
    131. A chromosomal inversion unique to the northern white-cheeked gibbon. PLoS One. 2009; 4(3):e4999. Carbone L, Mootnick AR, Nadler T, Moisson P, Ryder O, Roos C, de Jong PJ. PMID: 19319194; PMCID: PMC2656618.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    132. Cryobanking of viable biomaterials: implementation of new strategies for conservation purposes. Mol Ecol. 2009 Mar; 18(6):1030-3. Lermen D, Blömeke B, Browne R, Clarke A, Dyce PW, Fixemer T, Fuhr GR, Holt WV, Jewgenow K, Lloyd RE, Lötters S, Paulus M, Reid GM, Rapoport DH, Rawson D, Ringleb J, Ryder OA, Spörl G, Schmitt T, Veith M, Müller P. PMID: 19207252.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    133. Sequencing primate genomes: what have we learned? Annu Rev Genomics Hum Genet. 2009; 10:355-86. Marques-Bonet T, Ryder OA, Eichler EE. PMID: 19630567; PMCID: PMC6662594.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimals
    134. Horse domestication and conservation genetics of Przewalski's horse inferred from sex chromosomal and autosomal sequences. Mol Biol Evol. 2009 Jan; 26(1):199-208. Lau AN, Peng L, Goto H, Chemnick L, Ryder OA, Makova KD. PMID: 18931383.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    135. New insights into the evolution of intronic sequences of the beta-fibrinogen gene and their application in reconstructing mustelid phylogeny. Zoolog Sci. 2008 Jun; 25(6):662-72. Yu L, Liu J, Luan PT, Lee H, Lee M, Min MS, Ryder OA, Chemnick L, Davis H, Zhang YP. PMID: 18624576.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    136. Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation. BMC Evol Biol. 2007 Oct 24; 7:198. Yu L, Li YW, Ryder OA, Zhang YP. PMID: 17956639; PMCID: PMC2151078.
      View in: PubMed   Mentions: 34     Fields:    Translation:Animals
    137. Gallus GBrowse: a unified genomic database for the chicken. Nucleic Acids Res. 2008 Jan; 36(Database issue):D719-23. Schmidt CJ, Romanov M, Ryder O, Magrini V, Hickenbotham M, Glasscock J, McGrath S, Mardis E, Stein LD. PMID: 17933775; PMCID: PMC2238981.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    138. Primate TNF promoters reveal markers of phylogeny and evolution of innate immunity. PLoS One. 2007 Jul 18; 2(7):e621. Baena A, Mootnick AR, Falvo JV, Tsytskova AV, Ligeiro F, Diop OM, Brieva C, Gagneux P, O'Brien SJ, Ryder OA, Goldfeld AE. PMID: 17637837; PMCID: PMC1905939.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    139. Construction of a California condor BAC library and first-generation chicken-condor comparative physical map as an endangered species conservation genomics resource. Genomics. 2006 Dec; 88(6):711-718. Romanov MN, Koriabine M, Nefedov M, de Jong PJ, Ryder OA. PMID: 16884891.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    140. Sonic Hedgehog, a key development gene, experienced intensified molecular evolution in primates. Hum Mol Genet. 2006 Jul 01; 15(13):2031-7. Dorus S, Anderson JR, Vallender EJ, Gilbert SL, Zhang L, Chemnick LG, Ryder OA, Li W, Lahn BT. PMID: 16687440.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    141. A mobile element based phylogeny of Old World monkeys. Mol Phylogenet Evol. 2005 Dec; 37(3):872-80. Xing J, Wang H, Han K, Ray DA, Huang CH, Chemnick LG, Stewart CB, Disotell TR, Ryder OA, Batzer MA. PMID: 15936216.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    142. Karyotypic evolution of a novel cervid satellite DNA family isolated by microdissection from the Indian muntjac Y-chromosome. Chromosoma. 2005 May; 114(1):28-38. Li YC, Cheng YM, Hsieh LJ, Ryder OA, Yang F, Liao SJ, Hsiao KM, Tsai FJ, Tsai CH, Lin CC. PMID: 15827746.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    143. Alu insertion loci and platyrrhine primate phylogeny. Mol Phylogenet Evol. 2005 Apr; 35(1):117-26. Ray DA, Xing J, Hedges DJ, Hall MA, Laborde ME, Anders BA, White BR, Stoilova N, Fowlkes JD, Landry KE, Chemnick LG, Ryder OA, Batzer MA. PMID: 15737586.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
    144. Conservation genomics: applying whole genome studies to species conservation efforts. Cytogenet Genome Res. 2005; 108(1-3):6-15. Ryder OA. PMID: 15545710.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    145. Phylogenetic relationships within mammalian order Carnivora indicated by sequences of two nuclear DNA genes. Mol Phylogenet Evol. 2004 Dec; 33(3):694-705. Yu L, Li QW, Ryder OA, Zhang YP. PMID: 15522797.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    146. Evolution of the tandem repeats in thymidylate synthase enhancer region (TSER) in primates. Gene. 2004 Aug 18; 338(1):47-54. Zhang YW, Luo HR, Ryder OA, Zhang YP. PMID: 15302405.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    147. Phylogeny of the bears (Ursidae) based on nuclear and mitochondrial genes. Mol Phylogenet Evol. 2004 Aug; 32(2):480-94. Yu L, Li QW, Ryder OA, Zhang YP. PMID: 15223031.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    148. A prevalent POLG CAG microsatellite length allele in humans and African great apes. Mamm Genome. 2004 Jun; 15(6):492-502. Rovio AT, Abel J, Ahola AL, Andres AM, Bertranpetit J, Blancher A, Bontrop RE, Chemnick LG, Cooke HJ, Cummins JM, Davis HA, Elliott DJ, Fritsche E, Hargreave TB, Hoffman SM, Jequier AM, Kao SH, Kim HS, Marchington DR, Mehmet D, Otting N, Poulton J, Ryder OA, Schuppe HC, Takenaka O, Wei YH, Wichmann L, Jacobs HT. PMID: 15181541.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    149. A population genetic comparison of argali sheep (Ovis ammon) in Mongolia using the ND5 gene of mitochondrial DNA; implications for conservation. Mol Ecol. 2004 May; 13(5):1333-9. Tserenbataa T, Ramey RR, Ryder OA, Quinn TW, Reading RP. PMID: 15078469.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    150. The genetic architecture of selection at the human dopamine receptor D4 (DRD4) gene locus. Am J Hum Genet. 2004 May; 74(5):931-44. Wang E, Ding YC, Flodman P, Kidd JR, Kidd KK, Grady DL, Ryder OA, Spence MA, Swanson JM, Moyzis RK. PMID: 15077199; PMCID: PMC1181986.
      View in: PubMed   Mentions: 113     Fields:    Translation:HumansCells
    151. Nucleotide diversity in gorillas. Genetics. 2004 Mar; 166(3):1375-83. Yu N, Jensen-Seaman MI, Chemnick L, Ryder O, Li WH. PMID: 15082556; PMCID: PMC1470796.
      View in: PubMed   Mentions: 36     Fields:    Translation:AnimalsCells
    152. Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules. Chromosome Res. 2004; 12(1):65-76. Yang F, Fu B, O'Brien PC, Nie W, Ryder OA, Ferguson-Smith MA. PMID: 14984103.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsCells
    153. Intra- and interspecific variation of the CCR5 gene in higher primates. Mol Biol Evol. 2003 Oct; 20(10):1722-9. Zhang YW, Ryder OA, Zhang YP. PMID: 12949140.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    154. Low nucleotide diversity in chimpanzees and bonobos. Genetics. 2003 Aug; 164(4):1511-8. Yu N, Jensen-Seaman MI, Chemnick L, Kidd JR, Deinard AS, Ryder O, Kidd KK, Li WH. PMID: 12930756; PMCID: PMC1462640.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansAnimalsCells
    155. Comparative analysis of gene-expression patterns in human and African great ape cultured fibroblasts. Genome Res. 2003 Jul; 13(7):1619-30. Karaman MW, Houck ML, Chemnick LG, Nagpal S, Chawannakul D, Sudano D, Pike BL, Ho VV, Ryder OA, Hacia JG. PMID: 12840040; PMCID: PMC403735.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansAnimalsCells
    156. Homologous fission event(s) implicated for chromosomal polymorphisms among five species in the genus Equus. Cytogenet Genome Res. 2003; 102(1-4):217-21. Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E. PMID: 14970706.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    157. FISH analysis comparing genome organization in the domestic horse (Equus caballus) to that of the Mongolian wild horse (E. przewalskii). Cytogenet Genome Res. 2003; 102(1-4):222-5. Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E. PMID: 14970707.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    158. Karyotypic relationships of horses and zebras: results of cross-species chromosome painting. Cytogenet Genome Res. 2003; 102(1-4):235-43. Yang F, Fu B, O'Brien PC, Robinson TJ, Ryder OA, Ferguson-Smith MA. PMID: 14970709.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    159. Genetic variation in Przewalski's horses, with special focus on the last wild caught mare, 231 Orlitza III. Cytogenet Genome Res. 2003; 102(1-4):226-34. Bowling AT, Zimmermann W, Ryder O, Penado C, Peto S, Chemnick L, Yasinetskaya N, Zharkikh T. PMID: 14970708.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    160. Cloning advances and challenges for conservation. Trends Biotechnol. 2002 Jun; 20(6):231-2; discussion 233. Ryder OA. PMID: 12007484.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    161. Cytogenetic analysis of California condor (Gymnogyps californianus) chromosomes: comparison with chicken (Gallus gallus) macrochromosomes. Cytogenet Genome Res. 2002; 98(1):54-60. Raudsepp T, Houck ML, O'Brien PC, Ferguson-Smith MA, Ryder OA, Chowdhary BP. PMID: 12584441.
      View in: PubMed   Mentions: 24     Fields:    Translation:Animals
    162. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science. 2001 Dec 14; 294(5550):2348-51. Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E, Ryder OA, Stanhope MJ, de Jong WW, Springer MS. PMID: 11743200.
      View in: PubMed   Mentions: 350     Fields:    Translation:AnimalsCells
    163. Genetic divergence of orangutan subspecies (Pongo pygmaeus). J Mol Evol. 2001 Jun; 52(6):516-26. Zhang Y, Ryder OA, Zhang Y. PMID: 11443355.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    164. Identification of monozygotic twin chimpanzees by microsatellite analysis. Am J Primatol. 2000 Oct; 52(2):101-6. Zhang Y, Lawrance SK, Ryder OA, Zhang Y, Isaza R. PMID: 11051445.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    165. DNA banks for endangered animal species. Science. 2000 Apr 14; 288(5464):275-7. Ryder OA, McLaren A, Brenner S, Zhang YP, Benirschke K. PMID: 10777408.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    166. Molecular basis of albinism in the rhesus monkey. Mutat Res. 2000 Apr 03; 449(1-2):1-6. Ding B, Ryder OA, Wang X, Bai SC, Zhou SQ, Zhang Y. PMID: 10751629.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    167. Distribution of the ERE-1 family in Perissodactyla. Mamm Genome. 1999 Sep; 10(9):930-3. Sakagami M, Hiromura K, Chemnick LG, Ryder OA. PMID: 10441748.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    168. Sequence evolution of the CCR5 chemokine receptor gene in primates. Mol Biol Evol. 1999 Sep; 16(9):1145-54. Zhang YW, Ryder OA, Zhang YP. PMID: 10486970.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    169. Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays. Nat Genet. 1999 Jun; 22(2):164-7. Hacia JG, Fan JB, Ryder O, Jin L, Edgemon K, Ghandour G, Mayer RA, Sun B, Hsie L, Robbins CM, Brody LC, Wang D, Lander ES, Lipshutz R, Fodor SP, Collins FS. PMID: 10369258.
      View in: PubMed   Mentions: 85     Fields:    Translation:HumansAnimals
    170. Mitochondrial sequences show diverse evolutionary histories of African hominoids. Proc Natl Acad Sci U S A. 1999 Apr 27; 96(9):5077-82. Gagneux P, Wills C, Gerloff U, Tautz D, Morin PA, Boesch C, Fruth B, Hohmann G, Ryder OA, Woodruff DS. PMID: 10220421; PMCID: PMC21819.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansAnimals
    171. Primate evolution--in and out of Africa. Curr Biol. 1999 Feb 25; 9(4):R119-22. Zhang YP, Ryder OA. PMID: 10215416.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    172. Centric fusion differences among Oryx dammah, O. gazella, and O. leucoryx (Artiodactyla, Bovidae) Cytogenet Cell Genet. 1999; 86(1):74-80. Kumamoto AT, Charter SJ, Kingswood SC, Ryder OA, Gallagher DS. PMID: 10516440.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    173. [The relationship among human, gorilla, chimpanzee and orangutan]. Yi Chuan Xue Bao. 1999; 26(6):604-9. Ding B, Zhang YP, Ryder OA. PMID: 10876659.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    174. Mitochondrial control region and 12S rRNA variation in Przewalski's horse (Equus przewalskii). Anim Genet. 1998 Dec; 29(6):456-9. Oakenfull EA, Ryder OA. PMID: 9883508.
      View in: PubMed   Mentions: 12     Fields:    Translation:Animals
    175. Chimp research. Science. 1998 Oct 02; 282(5386):47. Ryder OA. PMID: 9786795.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    176. Centric fusion polymorphisms in waterbuck (Kobus ellipsiprymnus). J Hered. 1998 Jan-Feb; 89(1):96-100. Kingswood SC, Kumamoto AT, Charter SJ, Aman RA, Ryder OA. PMID: 9487681.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    177. Sequence variation and genetic diversity in the giant panda. Sci China C Life Sci. 1997 Apr; 40(2):210-6. Zhang Y, Ryder OA, Fan Z, Zhang H, He T, He G, Zhang A, Fei L, Zhong S, Chen H, Zhang C, Yang M, Zhu F, Peng Z, Pu T, Chen Y, Yao M, Guo W. PMID: 18726318.
      View in: PubMed   Mentions: 4     Fields:    
    178. [Mitochondrial DNA sequence evolution and conservation relevance of snub-nosed langurs]. Yi Chuan Xue Bao. 1997 Apr; 24(2):116-21. Zhang Y, Ryder OA. PMID: 9254966.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    179. Y-chromosome variation in great apes. Nature. 1997 Jan 09; 385(6612):125-6. Burrows W, Ryder OA. PMID: 8990113.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    180. Mitochondrial DNA diversity in gorillas. Mol Phylogenet Evol. 1996 Aug; 6(1):39-48. Garner KJ, Ryder OA. PMID: 8812304.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    181. Evolution of the cryptic FMR1 CGG repeat. Nat Genet. 1995 Nov; 11(3):301-8. Eichler EE, Kunst CB, Lugenbeel KA, Ryder OA, Davison D, Warren ST, Nelson DL. PMID: 7581454.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    182. Different rates of mitochondrial DNA sequence evolution in Kirk's dik-dik (Madoqua kirkii) populations. Mol Phylogenet Evol. 1995 Sep; 4(3):291-7. Zhang Y, Ryder OA. PMID: 8845965.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    183. Cytogenetic analysis shows extensive genomic rearrangements between red howler (Alouatta seniculus, Linnaeus) subspecies. Am J Primatol. 1995; 35(3):171-183. Stanyon R, Tofanelli S, Morescalchi MA, Agoramoorthy G, Ryder OA, Wienberg J. PMID: 31924072.
      View in: PubMed   Mentions: 3     Fields:    
    184. Phylogenetic relationships of bears (the Ursidae) inferred from mitochondrial DNA sequences. Mol Phylogenet Evol. 1994 Dec; 3(4):351-9. Zhang YP, Ryder OA. PMID: 7697192.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    185. Diploid chromosome number and chromosomal variation in the white rhinoceros (Ceratotherium simum). J Hered. 1994 Jan-Feb; 85(1):30-4. Houck ML, Ryder OA, Váhala J, Kock RA, Oosterhuis JE. PMID: 8120356.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    186. Mitochondrial DNA sequence evolution in the Arctoidea. Proc Natl Acad Sci U S A. 1993 Oct 15; 90(20):9557-61. Zhang YP, Ryder OA. PMID: 8415740; PMCID: PMC47608.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    187. Sequence of the mitochondrial control region, tRNA(Thr), tRNA(Pro) and tRNA(Phe) genes from the black rhinoceros, Diceros bicornis. Nucleic Acids Res. 1993 Sep 11; 21(18):4392. Jama M, Zhang Y, Aman RA, Ryder OA. PMID: 8414998; PMCID: PMC310078.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    188. Chromosomal and mitochondrial DNA variation in orang utans. J Hered. 1993 Sep-Oct; 84(5):405-9. Ryder OA, Chemnick LG. PMID: 8409361.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    189. Genomic distribution of heterochromatic sequences in equids: implications to rapid chromosomal evolution. J Hered. 1991 Sep-Oct; 82(5):369-77. Wichman HA, Payne CT, Ryder OA, Hamilton MJ, Maltbie M, Baker RJ. PMID: 1658126.
      View in: PubMed   Mentions: 45     Fields:    Translation:AnimalsCells
    190. A chimpanzee-derived chromosome-specific alpha satellite DNA sequence conserved between chimpanzee and human. Chromosoma. 1991 Mar; 100(3):156-61. Baldini A, Miller DA, Miller OJ, Ryder OA, Mitchell AR. PMID: 2040204.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    191. Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequences. Proc Natl Acad Sci U S A. 1990 Aug; 87(16):6127-31. Miyamoto MM, Kraus F, Ryder OA. PMID: 2385588; PMCID: PMC54485.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    192. Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes. Chromosoma. 1990 Apr; 99(1):3-10. Meyne J, Baker RJ, Hobart HH, Hsu TC, Ryder OA, Ward OG, Wiley JE, Wurster-Hill DH, Yates TL, Moyzis RK. PMID: 2340757.
      View in: PubMed   Mentions: 196     Fields:    Translation:AnimalsCells
    193. Chromosomal and molecular evolution in Asiatic wild asses. Genetica. 1990; 83(1):67-72. Ryder OA, Chemnick LG. PMID: 2090563.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    194. The majority of vitamin A is transported as retinyl esters in the blood of most carnivores. Comp Biochem Physiol A Comp Physiol. 1990; 95(4):573-8. Schweigert FJ, Ryder OA, Rambeck WA, Zucker H. PMID: 1971545.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    195. Allozyme variation and differentiation in African and Indian rhinoceroses. J Hered. 1989 Sep-Oct; 80(5):377-82. Merenlender AM, Woodruff DS, Ryder OA, Kock R, Váhala J. PMID: 2794471.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    196. Letters. J Hered. 1988 Sep 01; 79(5):401-402. Bowling AT, Ryder OA. PMID: 31581759.
      View in: PubMed   Mentions:    Fields:    
    197. Identification of the gene coding for the Endo B murine cytokeratin and its methylated, stable inactive state in mouse nonepithelial cells. Genes Dev. 1988 May; 2(5):505-16. Oshima RG, Trevor K, Shevinsky LH, Ryder OA, Ceceña G. PMID: 2454868.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    198. Genetic studies of blood markers in Przewalski's horses. J Hered. 1987 Mar-Apr; 78(2):75-80. Bowling AT, Ryder OA. PMID: 3584938.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    199. Mitochondrial DNA evolution in the genus Equus. Mol Biol Evol. 1986 Nov; 3(6):535-46. George M, Ryder OA. PMID: 2832696.
      View in: PubMed   Mentions: 22     Fields:    Translation:Animals
    200. Immunological systematics of the extinct quagga (Equidae). Experientia. 1985 Sep 15; 41(9):1192-3. Lowenstein JM, Ryder OA. PMID: 4043335.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    201. Male mule foal qualifies as the offspring of a female mule and jack donkey. J Hered. 1985 Sep-Oct; 76(5):379-81. Ryder OA, Chemnick LG, Bowling AT, Benirschke K. PMID: 4056372.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    202. DNA sequences from the quagga, an extinct member of the horse family. Nature. 1984 Nov 15-21; 312(5991):282-4. Higuchi R, Bowman B, Freiberger M, Ryder OA, Wilson AC. PMID: 6504142.
      View in: PubMed   Mentions: 120     Fields:    Translation:AnimalsCells
    203. Molecular cytogenetics of the equidae. II. purification and cytological localization of a (G + C)-rich satellite DNA from Equus hemionus onager and cross-species hybridization to E. asinus chromosomes. Cytogenet Cell Genet. 1983; 35(2):124-30. Gadi IK, Ryder OA. PMID: 6851669.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    204. Characterization of a cloned repetitive DNA sequence concentrated on the human X chromosome. Proc Natl Acad Sci U S A. 1982 Nov; 79(21):6593-7. Yang TP, Hansen SK, Oishi KK, Ryder OA, Hamkalo BA. PMID: 6959140; PMCID: PMC347174.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansCells
    205. Satellite DNA relationships in man and the primates. Nucleic Acids Res. 1981 Jul 24; 9(14):3235-49. Mitchell AR, Gosden JR, Ryder OA. PMID: 6269076; PMCID: PMC327349.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    206. Molecular evidence for genetic exchanges among ribosomal genes on nonhomologous chromosomes in man and apes. Proc Natl Acad Sci U S A. 1980 Dec; 77(12):7323-7. Arnheim N, Krystal M, Schmickel R, Wilson G, Ryder O, Zimmer E. PMID: 6261251; PMCID: PMC350495.
      View in: PubMed   Mentions: 140     Fields:    Translation:HumansAnimalsCells
    207. Molecular cytogenetics of the Equidae. I. Purification and cytological localization of a (G + C)-rich satellite DNA from Equus przewalskii. Chromosoma. 1979 Apr 30; 72(2):115-29. Ryder OA, Hansen SK. PMID: 456203.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    208. Hemoglobin polymorphism in Equus przewalskii and E. caballus analyzed by isoelectric focusing. Comp Biochem Physiol B. 1979; 62(4):305-8. Ryder OA, Sparkes RS, Sparkes MC, Clegg JB. PMID: 318448.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    209. Detection of proviral DNA in horse cells infected with equine infectious anemia virus. J Virol. 1978 Jun; 26(3):577-83. Rice NR, Simek S, Ryder OA, Coggins L. PMID: 209211; PMCID: PMC525883.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    210. Common and species-specific esterases of Equidae--IV. Horse of przewalski, onager and Zebra hartmannae. Comp Biochem Physiol B. 1978; 61(3):357-64. Kaminski M, Metenier L, Sykiotis M, Ryder OA, Demontoy MC. PMID: 318381.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    211. Chromosomal polymorphism in Equus hemionus. Cytogenet Cell Genet. 1978; 21(4):177-83. Ryder OA. PMID: 149653.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    212. Chromosome banding studies of the Equidae. Cytogenet Cell Genet. 1978; 20(1-6):332-50. Ryder OA, Epel NC, Benirschke K. PMID: 648186.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    213. Electron microscopy of membrane-associated folded chromosomes of Escherichia coli. Chromosoma. 1976 Mar 31; 55(1):13-25. Kavenoff R, Ryder OA. PMID: 767075.
      View in: PubMed   Mentions: 32     Fields:    Translation:Cells
    214. Properties of membrane-associated folded chromosomes of E. coli related to initiation and termination of DNA replication. Cell. 1975 Apr; 4(4):337-45. Ryder OA, Smith DW. PMID: 1091362.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    215. Isolation of membrane-associated folded chromosomes from Escherichia coli: effect of protein synthesis inhibition. J Bacteriol. 1974 Dec; 120(3):1356-63. Ryder OA, Smith DW. PMID: 4612018; PMCID: PMC245922.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
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