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    Kathleen Fisch

    TitleInterim Director
    SchoolUniversity of California, San Diego
    Address9500 Gilman Drive #0681
    CA La Jolla 92093
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      Collapse Biography 
      Collapse Education and Training
      University of California, BerkeleyB.A.
      University of California, DavisPh.D.

      Collapse ORNG Applications 
      Collapse Featured Publications
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      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Carter H, Marty R, Hofree M, Gross A, Jensen J, Fisch K, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg JF, Lippman SM, Yeo G, Gutkind S, Ideker T. Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. Cancer Discov. 2017 Feb 10. PMID: 28188128.
        View in: PubMed
      2. Cowell AN, Loy DE, Sundararaman SA, Valdivia H, Fisch K, Lescano AG, Baldeviano GC, Durand S, Gerbasi V, Sutherland CJ, Nolder D, Vinetz JM, Hahn BH, Winzeler EA. Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples. MBio. 2017 Feb 07; 8(1). PMID: 28174312.
        View in: PubMed
      3. Akagi R, Akatsu Y, Fisch K, Alvarez-Garcia O, Teramura T, Muramatsu Y, Saito M, Sasho T, Su AI, Lotz MK. Dysregulated circadian rhythm pathway in human osteoarthritis: NR1D1 and BMAL1 suppression alters TGF-ß signaling in chondrocytes. Osteoarthritis Cartilage. 2016 Nov 21. PMID: 27884645.
        View in: PubMed
      4. Chen S, Miyazaki M, Chandra V, Fisch K, Chang AN, Murre C. Id3 Orchestrates Germinal Center B Cell Development. Mol Cell Biol. 2016 Oct 15; 36(20):2543-52. PMID: 27457619.
        View in: PubMed
      5. Alvarez-Garcia O, Fisch K, Wineinger NE, Akagi R, Saito M, Sasho T, Su AI, Lotz MK. Increased DNA Methylation and Reduced Expression of Transcription Factors in Human Osteoarthritis Cartilage. Arthritis Rheumatol. 2016 Aug; 68(8):1876-86. PMID: 26881698; NIHMSID: NIHMS761062 [Available on 08/01/17].
        View in: PubMed
      6. Alvarez-Garcia O, Olmer M, Akagi R, Akasaki Y, Fisch K, Shen T, Su AI, Lotz MK. Suppression of REDD1 in osteoarthritis cartilage, a novel mechanism for dysregulated mTOR signaling and defective autophagy. Osteoarthritis Cartilage. 2016 Sep; 24(9):1639-47. PMID: 27118398; NIHMSID: NIHMS791169 [Available on 09/01/17].
        View in: PubMed
      7. Banno A, Garcia DA, van Baarsel ED, Metz PJ, Fisch K, Widjaja CE, Kim SH, Lopez J, Chang AN, Geurink PP, Florea BI, Overkleeft HS, Ovaa H, Bui JD, Yang J, Chang JT. Downregulation of 26S proteasome catalytic activity promotes epithelial-mesenchymal transition. Oncotarget. 2016 Apr 19; 7(16):21527-41. PMID: 26930717.
        View in: PubMed
      8. Meißner T, Fisch K, Gioia L, Su AI. OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing. BMC Med Genomics. 2015 May 21; 8:24. PMID: 25989980; PMCID: PMC4494802.
      9. Fisch K, Meißner T, Gioia L, Ducom JC, Carland TM, Loguercio S, Su AI. Omics Pipe: a community-based framework for reproducible multi-omics data analysis. Bioinformatics. 2015 Jun 1; 31(11):1724-8. PMID: 25637560; PMCID: PMC4443682.
      10. Fisch, K., Kozfkay, C., Ivy, J., Ryder, O., R. Waples. Fish hatchery genetic management techniques: Integrating Theory with Implementation. North American Journal of Aquaculture: HaMAR Special Section. 2015; 3(77):343-357.
      11. LaCava, M., Fisch, K., Nagel, M., Lindberg, J., May, B., Finger, A. Spawning behavior of cultured delta smelt (Hypomesus transpacificus) in a conservation hatchery. North American Journal of Aquaculture. 2015; 3(77):255-266.
      12. Wei N, Shi Y, Truong LN, Fisch K, Xu T, Gardiner E, Fu G, Hsu YS, Kishi S, Su AI, Wu X, Yang XL. Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage. Mol Cell. 2014 Oct 23; 56(2):323-32. PMID: 25284223; NIHMSID: NIHMS626748.
        View in: PubMed
      13. Fisch, K., Mahardja, B., Burton, R., May, B. Hybridization between delta smelt and two other species within the family Osmeridae in the San Francisco Bay-Delta. Conservation Genetics. 2014; (15):489-494.
      14. Lindberg, J., Tigan, G., Ellison, L., Rettinghouse, T., Nagel, M., Fisch, K. Aquaculture methods for a genetically managed population of endangered delta smelt. North American Journal of Aquaculture. 2013; 2(75):186-196.
      15. Fisch K, Ivy JA, Burton RS, May B. Evaluating the performance of captive breeding techniques for conservation hatcheries: a case study of the delta smelt captive breeding program. J Hered. 2013 Jan-Feb; 104(1):92-104. PMID: 23125405.
        View in: PubMed
      16. Fisch, K., Henderson, J., Burton, R., May, B. Population genetics and conservation implications for the endangered delta smelt in the San Francisco Bay-Delta. Conservation Genetics. 2011; 6(12):1421-1434.
      17. Israel, J., Fisch, K., Turner, T., Waples, R. Conservation of native Bay-Delta fishes: past experience and future considerations for artificial propagation of Chinook salmon, delta smelt, and green sturgeon. San Francisco Estuary & Watershed Science. 2011; 1(9):1-20.
      18. Fisch K, Petersen JL, Baerwald MR, Pedroia JK, May B. Characterization of 24 microsatellite loci in delta smelt, Hypomesus transpacificus, and their cross-species amplification in two other smelt species of the Osmeridae family. Mol Ecol Resour. 2009 Jan; 9(1):405-8. PMID: 21564663.
        View in: PubMed