Jose Pruneda-paz

Title(s)	Associate Professor, Cell and Developmental Biology
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Research

Research Activities and Funding

Genetic Analysis of Circadian Rhythms in Arabidopsis
NIH R01GM056006Sep 1, 1996 - Oct 31, 2017
Role: Co-Principal Investigator

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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Enhancer activation via TCP and HD-ZIP and repression by Dof transcription factors mediate giant cell-specific expression. Plant Cell. 2023 05 29; 35(6):2349-2368. Hong L, Rusnak B, Ko CS, Xu S, He X, Qiu D, Kang SE, Pruneda-Paz JL, Roeder AHK. PMID: 36814410; PMCID: PMC10226562.

View in: PubMed Mentions: 1 Fields:
Bot Botany Cel Cell Biology
Translation:Animals Cells
ORA47 is a transcriptional regulator of a general stress response hub. Plant J. 2022 04; 110(2):562-571. Zeng L, Chen H, Wang Y, Hicks D, Ke H, Pruneda-Paz J, Dehesh K. PMID: 35092704.

View in: PubMed Mentions: 1 Fields:
Bot Botany Cel Cell Biology Mol Molecular Biology
Translation:Animals Cells
Two bHLH transcription factors, bHLH48 and bHLH60, associate with phytochrome interacting factor 7 to regulate hypocotyl elongation in Arabidopsis. Cell Rep. 2021 05 04; 35(5):109054. Yang C, Huang S, Zeng Y, Liu C, Ma Q, Pruneda-Paz J, Kay SA, Li L. PMID: 33951433.

View in: PubMed Mentions: 13 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Animals
Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock. Dev Cell. 2019 06 17; 49(6):840-851.e8. Nohales MA, Liu W, Duffy T, Nozue K, Sawa M, Pruneda-Paz JL, Maloof JN, Jacobsen SE, Kay SA. PMID: 31105011; PMCID: PMC6597437.

View in: PubMed Mentions: 27 Fields:
Cel Cell Biology Emb Embryology
Translation:Animals Cells
High-Throughput Yeast One-Hybrid Screens Using a Cell Surface gLUC Reporter. Curr Protoc Plant Biol. 2019 03; 4(1):e20086. Li Z, Bonaldi K, Kang SE, Pruneda-Paz JL. PMID: 30742367; PMCID: PMC6392058.

View in: PubMed Mentions: 3 Fields:
Bot Botany Gen Genetics
Translation:Animals
Interaction and Regulation Between Lipid Mediator Phosphatidic Acid and Circadian Clock Regulators. Plant Cell. 2019 02; 31(2):399-416. Kim SC, Nusinow DA, Sorkin ML, Pruneda-Paz J, Wang X. PMID: 30674693; PMCID: PMC6447011.

View in: PubMed Mentions: 20 Fields:
Bot Botany Cel Cell Biology
Translation:Animals Cells
Functional dissection of the ARGONAUTE7 promoter. Plant Direct. 2019 Jan; 3(1):e00102. Hoyer JS, Pruneda-Paz JL, Breton G, Hassert MA, Holcomb EE, Fowler H, Bauer KM, Mreen J, Kay SA, Carrington JC. PMID: 31245750; PMCID: PMC6508778.

View in: PubMed Mentions: 3
ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in Arabidopsis. Proc Natl Acad Sci U S A. 2018 05 08; 115(19):E4503-E4511. Perrella G, Davidson MLH, O'Donnell L, Nastase AM, Herzyk P, Breton G, Pruneda-Paz JL, Kay SA, Chory J, Kaiserli E. PMID: 29686058; PMCID: PMC5948964.

View in: PubMed Mentions: 17 Fields:
Sci Science
Translation:Animals Cells
A Localized Pseudomonas syringae Infection Triggers Systemic Clock Responses in Arabidopsis. Curr Biol. 2018 02 19; 28(4):630-639.e4. Li Z, Bonaldi K, Uribe F, Pruneda-Paz JL. PMID: 29398214; PMCID: PMC5820129.

View in: PubMed Mentions: 17 Fields:
Bio Biology
Translation:Animals Cells
Construction of Arabidopsis Transcription Factor ORFeome Collections and Identification of Protein-DNA Interactions by High-Throughput Yeast One-Hybrid Screens. Methods Mol Biol. 2018; 1794:151-182. Kang SE, Breton G, Pruneda-Paz JL. PMID: 29855956.

View in: PubMed Mentions: 3 Fields:
Mol Molecular Biology
Translation:Animals
Novel cell surface luciferase reporter for high-throughput yeast one-hybrid screens. Nucleic Acids Res. 2017 Oct 13; 45(18):e157. Bonaldi K, Li Z, Kang SE, Breton G, Pruneda-Paz JL. PMID: 28985361; PMCID: PMC5737895.

View in: PubMed Mentions: 11 Fields:
Bio Biochemistry
Translation:Animals Cells
Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis. Nat Genet. 2017 Oct; 49(10):1546-1552. Xiao J, Jin R, Yu X, Shen M, Wagner JD, Pai A, Song C, Zhuang M, Klasfeld S, He C, Santos AM, Helliwell C, Pruneda-Paz JL, Kay SA, Lin X, Cui S, Garcia MF, Clarenz O, Goodrich J, Zhang X, Austin RS, Bonasio R, Wagner D. PMID: 28825728.

View in: PubMed Mentions: 110 Fields:
Gen Genetics
Translation:Animals Cells
TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet. 2017 Jun; 13(6):e1006856. Kubota A, Ito S, Shim JS, Johnson RS, Song YH, Breton G, Goralogia GS, Kwon MS, Laboy Cintrón D, Koyama T, Ohme-Takagi M, Pruneda-Paz JL, Kay SA, MacCoss MJ, Imaizumi T. PMID: 28628608; PMCID: PMC5495492.

View in: PubMed Mentions: 51 Fields:
Gen Genetics
Translation:Animals Cells
Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors. Curr Biol. 2017 Feb 06; 27(3):437-444. Shani E, Salehin M, Zhang Y, Sanchez SE, Doherty C, Wang R, Mangado CC, Song L, Tal I, Pisanty O, Ecker JR, Kay SA, Pruneda-Paz J, Estelle M. PMID: 28111153; PMCID: PMC5296222.

View in: PubMed Mentions: 58 Fields:
Bio Biology
Translation:Animals
Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis. Proc Natl Acad Sci U S A. 2015 Aug 25; 112(34):E4802-10. Nagel DH, Doherty CJ, Pruneda-Paz JL, Schmitz RJ, Ecker JR, Kay SA. PMID: 26261339; PMCID: PMC4553765.

View in: PubMed Mentions: 118 Fields:
Sci Science
Translation:Animals Cells
Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc Natl Acad Sci U S A. 2015 Jul 28; 112(30):9166-73. Zheng XY, Zhou M, Yoo H, Pruneda-Paz JL, Spivey NW, Kay SA, Dong X. PMID: 26139525; PMCID: PMC4522758.

View in: PubMed Mentions: 75 Fields:
Sci Science
Translation:Animals Cells
An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature. 2015 Jan 29; 517(7536):571-5. Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Wang C, Corwin J, Tsoukalas A, Zhang L, Ware D, Pauly M, Kliebenstein DJ, Dehesh K, Tagkopoulos I, Breton G, Pruneda-Paz JL, Ahnert SE, Kay SA, Hazen SP, Brady SM. PMID: 25533953; PMCID: PMC4333722.

View in: PubMed Mentions: 279 Fields:
Sci Science
Translation:Animals Cells
HsfB2b-mediated repression of PRR7 directs abiotic stress responses of the circadian clock. Proc Natl Acad Sci U S A. 2014 Nov 11; 111(45):16172-7. Kolmos E, Chow BY, Pruneda-Paz JL, Kay SA. PMID: 25352668; PMCID: PMC4234549.

View in: PubMed Mentions: 38 Fields:
Sci Science
Translation:Animals
Control of plant stem cell function by conserved interacting transcriptional regulators. Nature. 2015 Jan 15; 517(7534):377-80. Zhou Y, Liu X, Engstrom EM, Nimchuk ZL, Pruneda-Paz JL, Tarr PT, Yan A, Kay SA, Meyerowitz EM. PMID: 25363783; PMCID: PMC4297503.

View in: PubMed Mentions: 93 Fields:
Sci Science
Translation:Animals Cells
Nitrate foraging by Arabidopsis roots is mediated by the transcription factor TCP20 through the systemic signaling pathway. Proc Natl Acad Sci U S A. 2014 Oct 21; 111(42):15267-72. Guan P, Wang R, Nacry P, Breton G, Kay SA, Pruneda-Paz JL, Davani A, Crawford NM. PMID: 25288754; PMCID: PMC4210337.

View in: PubMed Mentions: 82 Fields:
Sci Science
Translation:Animals Cells PHPublic Health
FBH1 affects warm temperature responses in the Arabidopsis circadian clock. Proc Natl Acad Sci U S A. 2014 Oct 07; 111(40):14595-600. Nagel DH, Pruneda-Paz JL, Kay SA. PMID: 25246594; PMCID: PMC4210019.

View in: PubMed Mentions: 20 Fields:
Sci Science
Translation:Animals Cells
A genome-scale resource for the functional characterization of Arabidopsis transcription factors. Cell Rep. 2014 Jul 24; 8(2):622-32. Pruneda-Paz JL, Breton G, Nagel DH, Kang SE, Bonaldi K, Doherty CJ, Ravelo S, Galli M, Ecker JR, Kay SA. PMID: 25043187; PMCID: PMC4125603.

View in: PubMed Mentions: 85 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Animals
Transcriptional regulation of LUX by CBF1 mediates cold input to the circadian clock in Arabidopsis. Curr Biol. 2014 Jul 07; 24(13):1518-24. Chow BY, Sanchez SE, Breton G, Pruneda-Paz JL, Krogan NT, Kay SA. PMID: 24954045; PMCID: PMC4090264.

View in: PubMed Mentions: 31 Fields:
Bio Biology
Translation:Animals
Linking photoreceptor excitation to changes in plant architecture. Genes Dev. 2012 Apr 15; 26(8):785-90. Li L, Ljung K, Breton G, Schmitz RJ, Pruneda-Paz J, Cowing-Zitron C, Cole BJ, Ivans LJ, Pedmale UV, Jung HS, Ecker JR, Kay SA, Chory J. PMID: 22508725; PMCID: PMC3337452.

View in: PubMed Mentions: 210 Fields:
Mol Molecular Biology
Translation:Animals
Enhanced Y1H assays for Arabidopsis. Nat Methods. 2011 Oct 30; 8(12):1053-5. Gaudinier A, Zhang L, Reece-Hoyes JS, Taylor-Teeples M, Pu L, Liu Z, Breton G, Pruneda-Paz JL, Kim D, Kay SA, Walhout AJ, Ware D, Brady SM. PMID: 22037706; PMCID: PMC3821074.

View in: PubMed Mentions: 54 Fields:
Cli Clinical Laboratory Techniques
Translation:Animals Cells
An expanding universe of circadian networks in higher plants. Trends Plant Sci. 2010 May; 15(5):259-65. Pruneda-Paz JL, Kay SA. PMID: 20382065; PMCID: PMC2866796.

View in: PubMed Mentions: 95 Fields:
Bot Botany
Translation:Humans Animals Cells
A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science. 2009 Mar 13; 323(5920):1481-5. Pruneda-Paz JL, Breton G, Para A, Kay SA. PMID: 19286557; PMCID: PMC4259050.

View in: PubMed Mentions: 241 Fields:
Sci Science
Translation:Animals Cells
LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc Natl Acad Sci U S A. 2005 Jul 19; 102(29):10387-92. Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA. PMID: 16006522; PMCID: PMC1177380.

View in: PubMed Mentions: 198 Fields:
Sci Science
Translation:Animals
Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiol. 2005 Jun; 138(2):990-7. Hazen SP, Borevitz JO, Harmon FG, Pruneda-Paz JL, Schultz TF, Yanovsky MJ, Liljegren SJ, Ecker JR, Kay SA. PMID: 15908595; PMCID: PMC1150413.

View in: PubMed Mentions: 48 Fields:
Phy Physiology
Translation:Animals Cells
Bone marrow plasmacytoid dendritic cells can differentiate into myeloid dendritic cells upon virus infection. Nat Immunol. 2004 Dec; 5(12):1227-34. Zuniga EI, McGavern DB, Pruneda-Paz JL, Teng C, Oldstone MB. PMID: 15531885; PMCID: PMC5340300.

View in: PubMed Mentions: 74 Fields:
All Allergy and Immunology
Translation:Animals Cells