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    Jonathan Li

    TitleResident Physician
    SchoolUniversity of California, San Diego
    DepartmentSurgery
    Address200 W. Arbor Drive #8220
    CA San Diego 92103
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Kanakasabapathy MK, Pandya HJ, Draz MS, Chug MK, Sadasivam M, Kumar S, Etemad B, Yogesh V, Safavieh M, Asghar W, Li J, Tsibris AM, Kuritzkes DR, Shafiee H. Rapid, label-free CD4 testing using a smartphone compatible device. Lab Chip. 2017 Aug 22; 17(17):2910-2919. PMID: 28702612.
        View in: PubMed
      2. Henrich TJ, Hobbs KS, Hanhauser E, Scully E, Hogan LE, Robles YP, Leadabrand KS, Marty FM, Palmer CD, Jost S, Körner C, Li J, Gandhi RT, Hamdan A, Abramson J, LaCasce AS, Kuritzkes DR. Human Immunodeficiency Virus Type 1 Persistence Following Systemic Chemotherapy for Malignancy. J Infect Dis. 2017 Jul 15; 216(2):254-262. PMID: 28838149.
        View in: PubMed
      3. Jumare J, Sunshine S, Ahmed H, El-Kamary SS, Magder L, Hungerford L, Burdo T, Eyzaguirre LM, Umlauf A, Cherner M, Abimiku A, Charurat M, Li J, Blattner WA, Royal W. Peripheral blood lymphocyte HIV DNA levels correlate with HIV associated neurocognitive disorders in Nigeria. J Neurovirol. 2017 Jun; 23(3):474-482. PMID: 28243867.
        View in: PubMed
      4. Wen Y, Li J. Post-treatment HIV controllers or spontaneous controllers in disguise? AIDS. 2017 Feb 20; 31(4):587-589. PMID: 28118234.
        View in: PubMed
      5. Treasure GC, Aga E, Bosch RJ, Mellors JW, Kuritzkes DR, Para M, Gandhi RT, Li J. Brief Report: Relationship Among Viral Load Outcomes in HIV Treatment Interruption Trials. J Acquir Immune Defic Syndr. 2016 Jul 01; 72(3):310-3. PMID: 26910502; PMCID: PMC4911279 [Available on 07/01/17].
        View in: PubMed, PubMed Central
      6. Sunshine S, Kirchner R, Amr SS, Mansur L, Shakhbatyan R, Kim M, Bosque A, Siliciano RF, Planelles V, Hofmann O, Ho Sui S, Li J. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol. 2016 May; 90(9):4511-9. PMID: 26912621; PMCID: PMC4836361 [Available on 10/14/16].
        View in: PubMed, PubMed Central
      7. Li J, Etemad B, Ahmed H, Aga E, Bosch RJ, Mellors JW, Kuritzkes DR, Lederman MM, Para M, Gandhi RT. The size of the expressed HIV reservoir predicts timing of viral rebound after treatment interruption. AIDS. 2016 Jan 28; 30(3):343-53. PMID: 26588174; PMCID: PMC4840470 [Available on 01/28/17].
        View in: PubMed, PubMed Central
      8. Kearney MF, Wiegand A, Shao W, Coffin JM, Mellors JW, Lederman M, Gandhi RT, Keele BF, Li J. Origin of Rebound Plasma HIV Includes Cells with Identical Proviruses That Are Transcriptionally Active before Stopping of Antiretroviral Therapy. J Virol. 2015 Nov 18; 90(3):1369-76. PMID: 26581989; PMCID: PMC4719635.
        View in: PubMed, PubMed Central
      9. Ndhlovu ZM, Stampouloglou E, Cesa K, Mavrothalassitis O, Alvino DM, Li J, Wilton S, Karel D, Piechocka-Trocha A, Chen H, Pereyra F, Walker BD. The Breadth of Expandable Memory CD8+ T Cells Inversely Correlates with Residual Viral Loads in HIV Elite Controllers. J Virol. 2015 Nov; 89(21):10735-47. PMID: 26269189; PMCID: PMC4621138.
        View in: PubMed, PubMed Central
      10. Li J, Smith DM, Mellors JW. The need for treatment interruption studies and biomarker identification in the search for an HIV cure. AIDS. 2015 Jul 31; 29(12):1429-32. PMID: 25870989; PMCID: PMC4529360.
        View in: PubMed, PubMed Central
      11. Konstantopoulos C, Ribaudo H, Ragland K, Bangsberg DR, Li J. Antiretroviral regimen and suboptimal medication adherence are associated with low-level human immunodeficiency virus viremia. Open Forum Infect Dis. 2015 Jan; 2(1):ofu119. PMID: 25884007; PMCID: PMC4396432.
        View in: PubMed, PubMed Central
      12. Li J, Heisey A, Ahmed H, Wang H, Zheng L, Carrington M, Wrin T, Schooley RT, Lederman MM, Kuritzkes DR. Relationship of HIV reservoir characteristics with immune status and viral rebound kinetics in an HIV therapeutic vaccine study. AIDS. 2014 Nov 28; 28(18):2649-57. PMID: 25254301; PMCID: PMC4267919.
        View in: PubMed, PubMed Central
      13. Henrich TJ, Hanhauser E, Marty FM, Sirignano MN, Keating S, Lee TH, Robles YP, Davis BT, Li J, Heisey A, Hill AL, Busch MP, Armand P, Soiffer RJ, Altfeld M, Kuritzkes DR. Antiretroviral-free HIV-1 remission and viral rebound after allogeneic stem cell transplantation: report of 2 cases. Ann Intern Med. 2014 Sep 02; 161(5):319-27. PMID: 25047577; PMCID: PMC4236912.
        View in: PubMed, PubMed Central
      14. Buzon MJ, Martin-Gayo E, Pereyra F, Ouyang Z, Sun H, Li J, Piovoso M, Shaw A, Dalmau J, Zangger N, Martinez-Picado J, Zurakowski R, Yu XG, Telenti A, Walker BD, Rosenberg ES, Lichterfeld M. Long-term antiretroviral treatment initiated at primary HIV-1 infection affects the size, composition, and decay kinetics of the reservoir of HIV-1-infected CD4 T cells. J Virol. 2014 Sep 01; 88(17):10056-65. PMID: 24965451; PMCID: PMC4136362.
        View in: PubMed, PubMed Central
      15. Al-Hajjar SH, Frayha HH, Al-Hazmi M, Batawi R, McIntosh K, Sax PE, Al-Thawadi S, Al-Jumaah S, Busch MP, Hanhauser E, Kuritzkes DR, Li J, Henrich TJ. Prevention of HIV-1 transmission with postexposure prophylaxis after inadvertent infected blood transfusion. AIDS. 2014 Jun 19; 28(10):1539-41. PMID: 24896805; PMCID: PMC4226216.
        View in: PubMed, PubMed Central
      16. Li J, Gandhi RT. The sooner, the better: more evidence that early antiretroviral therapy lowers viral reservoirs in HIV-infected infants. J Infect Dis. 2014 Nov 15; 210(10):1519-22. PMID: 24850791.
        View in: PubMed
      17. Swenson LC, Min JE, Woods CK, Cai E, Li J, Montaner JS, Harrigan PR, Gonzalez-Serna A. HIV drug resistance detected during low-level viraemia is associated with subsequent virologic failure. AIDS. 2014 May 15; 28(8):1125-34. PMID: 24451160; PMCID: PMC4278403.
        View in: PubMed, PubMed Central
      18. Ryscavage P, Kelly S, Li J, Harrigan PR, Taiwo B. Significance and clinical management of persistent low-level viremia and very-low-level viremia in HIV-1-infected patients. Antimicrob Agents Chemother. 2014 Jul; 58(7):3585-98. PMID: 24733471; PMCID: PMC4068602.
        View in: PubMed, PubMed Central
      19. Li J, Chapman B, Charlebois P, Hofmann O, Weiner B, Porter AJ, Samuel R, Vardhanabhuti S, Zheng L, Eron J, Taiwo B, Zody MC, Henn MR, Kuritzkes DR, Hide W, Wilson CC, Berzins BI, Acosta EP, Bastow B, Kim PS, Read SW, Janik J, Meres DS, Lederman MM, Mong-Kryspin L, Shaw KE, Zimmerman LG, Leavitt R, De La Rosa G, Jennings A. Comparison of illumina and 454 deep sequencing in participants failing raltegravir-based antiretroviral therapy. PLoS One. 2014; 9(3):e90485. PMID: 24603872; PMCID: PMC3946168.
        View in: PubMed, PubMed Central
      20. Li J, Gallien S, Ribaudo H, Heisey A, Bangsberg DR, Kuritzkes DR. Incomplete adherence to antiretroviral therapy is associated with higher levels of residual HIV-1 viremia. AIDS. 2014 Jan 14; 28(2):181-6. PMID: 24361679; PMCID: PMC4193963.
        View in: PubMed, PubMed Central
      21. Buzon MJ, Sun H, Li C, Shaw A, Seiss K, Ouyang Z, Martin-Gayo E, Leng J, Henrich TJ, Li J, Pereyra F, Zurakowski R, Walker BD, Rosenberg ES, Yu XG, Lichterfeld M. HIV-1 persistence in CD4+ T cells with stem cell-like properties. Nat Med. 2014 Feb; 20(2):139-42. PMID: 24412925; PMCID: PMC3959167.
        View in: PubMed, PubMed Central
      22. Li J. HIV-1 drug-resistant minority variants: sweating the small stuff. J Infect Dis. 2014 Mar 01; 209(5):639-41. PMID: 24273184; PMCID: PMC3923546.
        View in: PubMed, PubMed Central
      23. Henrich TJ, Hu Z, Li J, Sciaranghella G, Busch MP, Keating SM, Gallien S, Lin NH, Giguel FF, Lavoie L, Ho VT, Armand P, Soiffer RJ, Sagar M, Lacasce AS, Kuritzkes DR. Long-term reduction in peripheral blood HIV type 1 reservoirs following reduced-intensity conditioning allogeneic stem cell transplantation. J Infect Dis. 2013 Jun 01; 207(11):1694-702. PMID: 23460751; PMCID: PMC3636784.
        View in: PubMed, PubMed Central
      24. Li J, Kuritzkes DR. Clinical implications of HIV-1 minority variants. Clin Infect Dis. 2013 Jun; 56(11):1667-74. PMID: 23446628; PMCID: PMC3641869.
        View in: PubMed, PubMed Central
      25. Li J, Paredes R, Ribaudo HJ, Kozal MJ, Svarovskaia ES, Johnson JA, Geretti AM, Metzner KJ, Jakobsen MR, Hullsiek KH, Ostergaard L, Miller MD, Kuritzkes DR. Impact of minority nonnucleoside reverse transcriptase inhibitor resistance mutations on resistance genotype after virologic failure. J Infect Dis. 2013 Mar 15; 207(6):893-7. PMID: 23264671; PMCID: PMC3571444.
        View in: PubMed, PubMed Central
      26. Henrich TJ, Gallien S, Li J, Pereyra F, Kuritzkes DR. Low-level detection and quantitation of cellular HIV-1 DNA and 2-LTR circles using droplet digital PCR. J Virol Methods. 2012 Dec; 186(1-2):68-72. PMID: 22974526; PMCID: PMC3517891.
        View in: PubMed, PubMed Central
      27. Li J, Christensen JA, Wang H, Spritzler J, Kuritzkes DR. Evaluation of HIV-1 ambiguous nucleotide frequency during antiretroviral treatment interruption. J Acquir Immune Defic Syndr. 2012 Sep 01; 61(1):19-22. PMID: 22732468; PMCID: PMC3427424.
        View in: PubMed, PubMed Central
      28. Li J, Gallien S, Do TD, Martin JN, Deeks S, Kuritzkes DR, Hatano H. Prevalence and significance of HIV-1 drug resistance mutations among patients on antiretroviral therapy with detectable low-level viremia. Antimicrob Agents Chemother. 2012 Nov; 56(11):5998-6000. PMID: 22890763; PMCID: PMC3486544.
        View in: PubMed, PubMed Central
      29. Li J, Brumme CJ, Lederman MM, Brumme ZL, Wang H, Spritzler J, Carrington M, Medvik K, Walker BD, Schooley RT, Kuritzkes DR. Characteristics and outcomes of initial virologic suppressors during analytic treatment interruption in a therapeutic HIV-1 gag vaccine trial. PLoS One. 2012; 7(3):e34134. PMID: 22479542; PMCID: PMC3316607.
        View in: PubMed, PubMed Central
      30. Li J, Paredes R, Ribaudo HJ, Svarovskaia ES, Kozal MJ, Hullsiek KH, Miller MD, Bangsberg DR, Kuritzkes DR. Relationship between minority nonnucleoside reverse transcriptase inhibitor resistance mutations, adherence, and the risk of virologic failure. AIDS. 2012 Jan 14; 26(2):185-92. PMID: 22179227; PMCID: PMC3437231.
        View in: PubMed, PubMed Central
      31. Li J, Paredes R, Ribaudo HJ, Svarovskaia ES, Metzner KJ, Kozal MJ, Hullsiek KH, Balduin M, Jakobsen MR, Geretti AM, Thiebaut R, Ostergaard L, Masquelier B, Johnson JA, Miller MD, Kuritzkes DR. Low-frequency HIV-1 drug resistance mutations and risk of NNRTI-based antiretroviral treatment failure: a systematic review and pooled analysis. JAMA. 2011 Apr 06; 305(13):1327-35. PMID: 21467286; PMCID: PMC3325645.
        View in: PubMed, PubMed Central
      32. Li J, Brumme ZL, Brumme CJ, Wang H, Spritzler J, Robertson MN, Lederman MM, Carrington M, Walker BD, Schooley RT, Kuritzkes DR. Factors associated with viral rebound in HIV-1-infected individuals enrolled in a therapeutic HIV-1 gag vaccine trial. J Infect Dis. 2011 Apr 01; 203(7):976-83. PMID: 21402549; PMCID: PMC3068025.
        View in: PubMed, PubMed Central
      33. Henrich TJ, Li J, Felsenstein D, Kotton CN, Plenge RM, Pereyra F, Marty FM, Lin NH, Grazioso P, Crochiere DM, Eggers D, Kuritzkes DR, Tsibris AM. Xenotropic murine leukemia virus-related virus prevalence in patients with chronic fatigue syndrome or chronic immunomodulatory conditions. J Infect Dis. 2010 Nov 15; 202(10):1478-81. PMID: 20936980; PMCID: PMC2957553.
        View in: PubMed, PubMed Central
      34. Tucker JD, Li J, Robbins GK, Davis BT, Lobo AM, Kunkel J, Papaliodis GN, Durand ML, Felsenstein D. Ocular syphilis among HIV-infected patients: a systematic analysis of the literature. Sex Transm Infect. 2011 Feb; 87(1):4-8. PMID: 20798396; PMCID: PMC3103105.
        View in: PubMed, PubMed Central
      35. Li J, Tucker JD, Lobo AM, Marra CM, Davis BT, Papaliodis GN, Felsenstein D, Durand ML, Yawetz S, Robbins GK. Ocular syphilis among HIV-infected individuals. Clin Infect Dis. 2010 Aug 15; 51(4):468-71. PMID: 20604717; PMCID: PMC2928476.
        View in: PubMed, PubMed Central
      36. Li J, Sax PE. HSV-1 encephalitis complicated by cerebral hemorrhage in an HIV-positive person. AIDS Read. 2009 Apr; 19(4):153-5. PMID: 19388182.
        View in: PubMed
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