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    Jeffrey Omens

    TitleAdjunct Professor
    SchoolUniversity of California, San Diego
    DepartmentMedicine
    Address9500 Gilman Drive #0613-J
    CA La Jolla 92093
    Phone858-534-8102
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      Collapse Research 
      Collapse Research Activities and Funding
      The Cardiac Atlas Project
      NIH/NHLBI R01HL121754Jan 1, 2014 - Dec 31, 2017
      Role: Principal Investigator
      Cardiomyocyte mechanotransduction through the integrin complex
      NIH/NHLBI R01HL103566Jul 15, 2010 - Apr 30, 2015
      Role: Principal Investigator
      MECHANICAL REGULATION OF DILATED CARDIOMYOPATHY
      NIH/NHLBI R01HL064321Feb 1, 2001 - Jan 31, 2006
      Role: Principal Investigator
      STRESS AND STRAIN AS STIMULI FOR MYOCARDIAL GROWTH
      NIH/NHLBI R01HL054686Aug 1, 1996 - Jun 30, 2001
      Role: Principal Investigator
      STRESS AND STRAIN AS STIMULI FOR MYOCARDIAL GROWTH
      NIH/NHLBI R29HL054686Aug 1, 1996 - Jun 30, 2000
      Role: Principal Investigator
      NATIONAL BIOMEDICAL COMPUTATION RESOURCE
      NIH P41RR008605Apr 15, 1994 - Apr 30, 2014
      Role: Co-Investigator
      VENTRICULAR TRANSMURAL DEFORMATION IN VOLUME OVERLOAD
      NIH/NHLBI F32HL008153Mar 27, 1990
      Role: Principal Investigator
      Transmural Deformation
      NIH/NHLBI R01HL032583Jul 1, 1984 - Jun 30, 2010
      Role: Principal Investigator

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Dewan S, Krishnamurthy A, Kole D, Conca G, Kerckhoffs R, Puchalski MD, Omens J, Sun H, Nigam V, McCulloch AD. Model of Human Fetal Growth in Hypoplastic Left Heart Syndrome: Reduced Ventricular Growth Due to Decreased Ventricular Filling and Altered Shape. Front Pediatr. 2017; 5:25. PMID: 28275592.
        View in: PubMed
      2. Bradford WH, Omens J, Sheikh F. Vinculin at the heart of aging. Ann Transl Med. 2017 Feb; 5(3):62. PMID: 28251141.
        View in: PubMed
      3. Villongco CT, Krummen DE, Omens J, McCulloch AD. Non-invasive, model-based measures of ventricular electrical dyssynchrony for predicting CRT outcomes. Europace. 2016 Dec; 18(suppl 4):iv104-iv112. PMID: 28011837.
        View in: PubMed
      4. Carruth ED, McCulloch AD, Omens J. Transmural gradients of myocardial structure and mechanics: Implications for fiber stress and strain in pressure overload. Prog Biophys Mol Biol. 2016 Nov 11. PMID: 27845176.
        View in: PubMed
      5. McClymont D, Teh I, Carruth E, Omens J, McCulloch A, Whittington HJ, Kohl P, Grau V, Schneider JE. Evaluation of non-Gaussian diffusion in cardiac MRI. Magn Reson Med. 2016 Sep 26. PMID: 27670633.
        View in: PubMed
      6. Farrar G, Suinesiaputra A, Gilbert K, Perry JC, Hegde S, Marsden A, Young AA, Omens J, McCulloch AD. Atlas-Based Ventricular Shape Analysis for Understanding Congenital Heart Disease. Prog Pediatr Cardiol. 2016 Dec; 43:61-69. PMID: 28082823.
        View in: PubMed
      7. Gilbert K, Farrar G, Cowan B, Suinesiaputra A, Occleshaw C, Pontre B, Perry J, Hegde S, Omens J, McCulloch A, Young A. Improving assessment of congenital heart disease through rapid patient specific modeling. Conf Proc IEEE Eng Med Biol Soc. 2016 Aug; 2016:1228-1231. PMID: 28268546.
        View in: PubMed
      8. Wassenaar JW, Gaetani R, Garcia JJ, Braden RL, Luo CG, Huang D, DeMaria AN, Omens J, Christman KL. Evidence for Mechanisms Underlying the Functional Benefits of a Myocardial Matrix Hydrogel for Post-MI Treatment. J Am Coll Cardiol. 2016 Mar 8; 67(9):1074-86. PMID: 26940929.
        View in: PubMed
      9. Krummen DE, Hayase J, Vampola SP, Ho G, Schricker AA, Lalani GG, Baykaner T, Coe TM, Clopton P, Rappel WJ, Omens J, Narayan SM. Modifying Ventricular Fibrillation by Targeted Rotor Substrate Ablation: Proof-of-Concept from Experimental Studies to Clinical VF. J Cardiovasc Electrophysiol. 2015 Oct; 26(10):1117-26. PMID: 26179310.
        View in: PubMed
      10. Vincent KP, Gonzales MJ, Gillette AK, Villongco CT, Pezzuto S, Omens J, Holst MJ, McCulloch AD. High-order finite element methods for cardiac monodomain simulations. Front Physiol. 2015; 6:217. PMID: 26300783.
        View in: PubMed
      11. Gilbert K, Farrar G, Cowan BR, Suinesiaputra A, Occleshaw C, Pontre B, Perry J, Hegde S, Marsden A, Omens J, McCulloch A, Young AA. Creating shape templates for patient specific biventricular modeling in congenital heart disease. Conf Proc IEEE Eng Med Biol Soc. 2015 Aug; 2015:679-82. PMID: 26736353.
        View in: PubMed
      12. Krishnamurthy A, Villongco C, Beck A, Omens J, McCulloch A. Left Ventricular Diastolic and Systolic Material Property Estimation from Image Data: LV Mechanics Challenge. Stat Atlases Comput Models Heart. 2015 Jan; 8896:63-73. PMID: 25729778.
        View in: PubMed
      13. Edwards AG, Grandi E, Hake JE, Patel S, Li P, Miyamoto S, Omens J, Heller Brown J, Bers DM, McCulloch AD. Nonequilibrium reactivation of na+ current drives early afterdepolarizations in mouse ventricle. Circ Arrhythm Electrophysiol. 2014 Dec; 7(6):1205-13. PMID: 25236710.
        View in: PubMed
      14. Villongco CT, Krummen DE, Stark P, Omens J, McCulloch AD. Patient-specific modeling of ventricular activation pattern using surface ECG-derived vectorcardiogram in bundle branch block. Prog Biophys Mol Biol. 2014 Aug; 115(2-3):305-13. PMID: 25110279.
        View in: PubMed
      15. Tangney JR, Campbell SG, McCulloch AD, Omens J. Timing and magnitude of systolic stretch affect myofilament activation and mechanical work. Am J Physiol Heart Circ Physiol. 2014 Aug 1; 307(3):H353-60. PMID: 24878774.
        View in: PubMed
      16. Pfeiffer ER, Tangney JR, Omens J, McCulloch AD. Biomechanics of cardiac electromechanical coupling and mechanoelectric feedback. J Biomech Eng. 2014 Feb 1; 136(2). PMID: 24337452.
        View in: PubMed
      17. Lyon RC, Mezzano V, Wright AT, Pfeiffer E, Chuang J, Banares K, Castaneda A, Ouyang K, Cui L, Contu R, Gu Y, Evans SM, Omens J, Peterson KL, McCulloch AD, Sheikh F. Connexin defects underlie arrhythmogenic right ventricular cardiomyopathy in a novel mouse model. Hum Mol Genet. 2014 Mar 1; 23(5):1134-50. PMID: 24108106.
        View in: PubMed
      18. Krishnamurthy A, Villongco CT, Chuang J, Frank LR, Nigam V, Belezzuoli E, Stark P, Krummen DE, Narayan S, Omens J, McCulloch AD, Kerckhoffs RC. Patient-Specific Models of Cardiac Biomechanics. J Comput Phys. 2013 Jul 1; 244:4-21. PMID: 23729839.
        View in: PubMed
      19. Howard EJ, Kerckhoffs RC, Vincent KP, Krishnamurthy A, Villongco CT, Mulligan LJ, McCulloch AD, Omens J. Myofiber prestretch magnitude determines regional systolic function during ectopic activation in the tachycardia-induced failing canine heart. Am J Physiol Heart Circ Physiol. 2013 Jul 15; 305(2):H192-202. PMID: 23666676.
        View in: PubMed
      20. Tangney JR, Chuang JS, Janssen MS, Krishnamurthy A, Liao P, Hoshijima M, Wu X, Meininger GA, Muthuchamy M, Zemljic-Harpf A, Ross RS, Frank LR, McCulloch AD, Omens J. Novel role for vinculin in ventricular myocyte mechanics and dysfunction. Biophys J. 2013 Apr 2; 104(7):1623-33. PMID: 23561539.
        View in: PubMed
      21. Kerckhoffs RC, Omens J, McCulloch AD. Mechanical discoordination increases continuously after the onset of left bundle branch block despite constant electrical dyssynchrony in a computational model of cardiac electromechanics and growth. Europace. 2012 Nov; 14 Suppl 5:v65-v72. PMID: 23104917.
        View in: PubMed
      22. Raskin A, Lange S, Banares K, Lyon RC, Zieseniss A, Lee LK, Yamazaki KG, Granzier HL, Gregorio CC, McCulloch AD, Omens J, Sheikh F. A novel mechanism involving four-and-a-half LIM domain protein-1 and extracellular signal-regulated kinase-2 regulates titin phosphorylation and mechanics. J Biol Chem. 2012 Aug 24; 287(35):29273-84. PMID: 22778266.
        View in: PubMed
      23. Sheikh F, Ouyang K, Campbell SG, Lyon RC, Chuang J, Fitzsimons D, Tangney J, Hidalgo CG, Chung CS, Cheng H, Dalton ND, Gu Y, Kasahara H, Ghassemian M, Omens J, Peterson KL, Granzier HL, Moss RL, McCulloch AD, Chen J. Mouse and computational models link Mlc2v dephosphorylation to altered myosin kinetics in early cardiac disease. J Clin Invest. 2012 Apr 2; 122(4):1209-21. PMID: 22426213.
        View in: PubMed
      24. Meng P, Irturk A, Kastner R, McCulloch A, Omens J, Wright A. GPU acceleration of optical mapping algorithm for cardiac electrophysiology. Conf Proc IEEE Eng Med Biol Soc. 2012; 2012:1558-61. PMID: 23366201.
        View in: PubMed
      25. Kerckhoffs RC, Omens J, McCulloch AD. A single strain-based growth law predicts concentric and eccentric cardiac growth during pressure and volume overload. Mech Res Commun. 2012 Jun 1; 42:40-50. PMID: 22639476.
        View in: PubMed
      26. Hunt DL, Campbell PH, Zambon AC, Vranizan K, Evans SM, Kuo HC, Yamaguchi KD, Omens J, McCulloch AD. Early postmyocardial infarction survival in Murphy Roths Large mice is mediated by attenuated apoptosis and inflammation but depends on genetic background. Exp Physiol. 2012 Jan; 97(1):102-14. PMID: 21967898.
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      27. Howard EJ, Covell JW, Mulligan LJ, McCulloch AD, Omens J, Kerckhoffs RC. Improvement in pump function with endocardial biventricular pacing increases with activation time at the left ventricular pacing site in failing canine hearts. Am J Physiol Heart Circ Physiol. 2011 Oct; 301(4):H1447-55. PMID: 21784986.
        View in: PubMed
      28. Aguado-Sierra J, Krishnamurthy A, Villongco C, Chuang J, Howard E, Gonzales MJ, Omens J, Krummen DE, Narayan S, Kerckhoffs RC, McCulloch AD. Patient-specific modeling of dyssynchronous heart failure: a case study. Prog Biophys Mol Biol. 2011 Oct; 107(1):147-55. PMID: 21763714.
        View in: PubMed
      29. Rane AA, Chuang JS, Shah A, Hu DP, Dalton ND, Gu Y, Peterson KL, Omens J, Christman KL. Increased infarct wall thickness by a bio-inert material is insufficient to prevent negative left ventricular remodeling after myocardial infarction. PLoS One. 2011; 6(6):e21571. PMID: 21731777.
        View in: PubMed
      30. Chuang JS, Zemljic-Harpf A, Ross RS, Frank LR, McCulloch AD, Omens J. Determination of three-dimensional ventricular strain distributions in gene-targeted mice using tagged MRI. Magn Reson Med. 2010 Nov; 64(5):1281-8. PMID: 20981782.
        View in: PubMed
      31. Kerckhoffs RC, Omens J, McCulloch AD, Mulligan LJ. Ventricular dilation and electrical dyssynchrony synergistically increase regional mechanical nonuniformity but not mechanical dyssynchrony: a computational model. Circ Heart Fail. 2010 Jul; 3(4):528-36. PMID: 20466849.
        View in: PubMed
      32. Jacot JG, Kita-Matsuo H, Wei KA, Chen HS, Omens J, Mercola M, McCulloch AD. Cardiac myocyte force development during differentiation and maturation. Ann N Y Acad Sci. 2010 Feb; 1188:121-7. PMID: 20201894.
        View in: PubMed
      33. Raskin AM, Hoshijima M, Swanson E, McCulloch AD, Omens J. Hypertrophic gene expression induced by chronic stretch of excised mouse heart muscle. Mol Cell Biomech. 2009 Sep; 6(3):145-59. PMID: 19670825.
        View in: PubMed
      34. Campbell SG, Howard E, Aguado-Sierra J, Coppola BA, Omens J, Mulligan LJ, McCulloch AD, Kerckhoffs RC. Effect of transmurally heterogeneous myocyte excitation-contraction coupling on canine left ventricular electromechanics. Exp Physiol. 2009 May; 94(5):541-52. PMID: 19251984.
        View in: PubMed
      35. Ashikaga H, van der Spoel TI, Coppola BA, Omens J. Transmural myocardial mechanics during isovolumic contraction. JACC Cardiovasc Imaging. 2009 Feb; 2(2):202-11. PMID: 19356557.
        View in: PubMed
      36. Sheikh F, Raskin A, Chu PH, Lange S, Domenighetti AA, Zheng M, Liang X, Zhang T, Yajima T, Gu Y, Dalton ND, Mahata SK, Dorn GW, Brown JH, Heller-Brown J, Peterson KL, Omens J, McCulloch AD, Chen J. An FHL1-containing complex within the cardiomyocyte sarcomere mediates hypertrophic biomechanical stress responses in mice. J Clin Invest. 2008 Dec; 118(12):3870-80. PMID: 19033658.
        View in: PubMed
      37. Coppola BA, Omens J. Role of tissue structure on ventricular wall mechanics. Mol Cell Biomech. 2008 Sep; 5(3):183-96. PMID: 18751527.
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      38. Kerckhoffs RC, McCulloch AD, Omens J, Mulligan LJ. Effects of biventricular pacing and scar size in a computational model of the failing heart with left bundle branch block. Med Image Anal. 2009 Apr; 13(2):362-9. PMID: 18675578.
        View in: PubMed
      39. Kerckhoffs RC, Narayan SM, Omens J, Mulligan LJ, McCulloch AD. Computational modeling for bedside application. Heart Fail Clin. 2008 Jul; 4(3):371-8. PMID: 18598988.
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      40. Jacot JG, McCulloch AD, Omens J. Substrate stiffness affects the functional maturation of neonatal rat ventricular myocytes. Biophys J. 2008 Oct; 95(7):3479-87. PMID: 18586852.
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      41. Ashikaga H, Coppola BA, Yamazaki KG, Villarreal FJ, Omens J, Covell JW. Changes in regional myocardial volume during the cardiac cycle: implications for transmural blood flow and cardiac structure. Am J Physiol Heart Circ Physiol. 2008 Aug; 295(2):H610-8. PMID: 18515651.
        View in: PubMed
      42. Campbell PH, Hunt DL, Jones Y, Harwood F, Amiel D, Omens J, McCulloch AD. Effects of biglycan deficiency on myocardial infarct structure and mechanics. Mol Cell Biomech. 2008 Mar; 5(1):27-35. PMID: 18524244.
        View in: PubMed
      43. Feala JD, Omens J, Paternostro G, McCulloch AD. Discovering regulators of the Drosophila cardiac hypoxia response using automated phenotyping technology. Ann N Y Acad Sci. 2008 Mar; 1123:169-77. PMID: 18375589.
        View in: PubMed
      44. Coppola BA, Covell JW, McCulloch AD, Omens J. Asynchrony of ventricular activation affects magnitude and timing of fiber stretch in late-activated regions of the canine heart. Am J Physiol Heart Circ Physiol. 2007 Jul; 293(1):H754-61. PMID: 17449547.
        View in: PubMed
      45. Costandi PN, McCulloch AD, Omens J, Frank LR. High-resolution longitudinal MRI of the transition to heart failure. Magn Reson Med. 2007 Apr; 57(4):714-20. PMID: 17390366.
        View in: PubMed
      46. Means CK, Xiao CY, Li Z, Zhang T, Omens J, Ishii I, Chun J, Brown JH. Sphingosine 1-phosphate S1P2 and S1P3 receptor-mediated Akt activation protects against in vivo myocardial ischemia-reperfusion injury. Am J Physiol Heart Circ Physiol. 2007 Jun; 292(6):H2944-51. PMID: 17293497.
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      47. Ashikaga H, Coppola BA, Hopenfeld B, Leifer ES, McVeigh ER, Omens J. Transmural dispersion of myofiber mechanics: implications for electrical heterogeneity in vivo. J Am Coll Cardiol. 2007 Feb 27; 49(8):909-16. PMID: 17320750.
        View in: PubMed
      48. Kerckhoffs RC, Neal ML, Gu Q, Bassingthwaighte JB, Omens J, McCulloch AD. Coupling of a 3D finite element model of cardiac ventricular mechanics to lumped systems models of the systemic and pulmonic circulation. Ann Biomed Eng. 2007 Jan; 35(1):1-18. PMID: 17111210.
        View in: PubMed
      49. Costandi PN, Frank LR, McCulloch AD, Omens J. Role of diastolic properties in the transition to failure in a mouse model of the cardiac dilatation. Am J Physiol Heart Circ Physiol. 2006 Dec; 291(6):H2971-9. PMID: 16861693.
        View in: PubMed
      50. McCulloch AD, Omens J. Myocyte shearing, myocardial sheets, and microtubules. Circ Res. 2006 Jan 6; 98(1):1-3. PMID: 16397149.
        View in: PubMed
      51. Lorenzen-Schmidt I, Schmid-Schönbein GW, Giles WR, McCulloch AD, Chien S, Omens J. Chronotropic response of cultured neonatal rat ventricular myocytes to short-term fluid shear. Cell Biochem Biophys. 2006; 46(2):113-22. PMID: 17012753.
        View in: PubMed
      52. Lorenzen-Schmidt I, Stuyvers BD, ter Keurs HE, Date MO, Hoshijima M, Chien KR, McCulloch AD, Omens J. Young MLP deficient mice show diastolic dysfunction before the onset of dilated cardiomyopathy. J Mol Cell Cardiol. 2005 Aug; 39(2):241-50. PMID: 15978612.
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      53. Lorenzen-Schmidt I, McCulloch AD, Omens J. Deficiency of actinin-associated LIM protein alters regional right ventricular function and hypertrophic remodeling. Ann Biomed Eng. 2005 Jul; 33(7):888-96. PMID: 16060528.
        View in: PubMed
      54. Weis SM, Zimmerman SD, Shah M, Covell JW, Omens J, Ross J, Dalton N, Jones Y, Reed CC, Iozzo RV, McCulloch AD. A role for decorin in the remodeling of myocardial infarction. Matrix Biol. 2005 Jun; 24(4):313-24. PMID: 15949932.
        View in: PubMed
      55. Gurantz D, Yndestad A, Halvorsen B, Lunde OV, Omens J, Ueland T, Aukrust P, Moore CD, Kjekshus J, Greenberg BH. Etanercept or intravenous immunoglobulin attenuates expression of genes involved in post-myocardial infarction remodeling. Cardiovasc Res. 2005 Jul 1; 67(1):106-15. PMID: 15949474.
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      56. Ashikaga H, Covell JW, Omens J. Diastolic dysfunction in volume-overload hypertrophy is associated with abnormal shearing of myolaminar sheets. Am J Physiol Heart Circ Physiol. 2005 Jun; 288(6):H2603-10. PMID: 15708954.
        View in: PubMed
      57. Ashikaga H, Omens J, Covell JW. Time-dependent remodeling of transmural architecture underlying abnormal ventricular geometry in chronic volume overload heart failure. Am J Physiol Heart Circ Physiol. 2004 Nov; 287(5):H1994-2002. PMID: 15242833.
        View in: PubMed
      58. Villarreal F, Omens J, Dillmann W, Risteli J, Nguyen J, Covell J. Early degradation and serum appearance of type I collagen fragments after myocardial infarction. J Mol Cell Cardiol. 2004 Apr; 36(4):597-601. PMID: 15081319.
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      59. Ashikaga H, Omens J, Ingels NB, Covell JW. Transmural mechanics at left ventricular epicardial pacing site. Am J Physiol Heart Circ Physiol. 2004 Jun; 286(6):H2401-7. PMID: 14751858.
        View in: PubMed
      60. Ashikaga H, Criscione JC, Omens J, Covell JW, Ingels NB. Transmural left ventricular mechanics underlying torsional recoil during relaxation. Am J Physiol Heart Circ Physiol. 2004 Feb; 286(2):H640-7. PMID: 14551052.
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      61. Villarreal FJ, Griffin M, Omens J, Dillmann W, Nguyen J, Covell J. Early short-term treatment with doxycycline modulates postinfarction left ventricular remodeling. Circulation. 2003 Sep 23; 108(12):1487-92. PMID: 12952845.
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      62. Sung D, Mills RW, Schettler J, Narayan SM, Omens J, McCulloch AD. Ventricular filling slows epicardial conduction and increases action potential duration in an optical mapping study of the isolated rabbit heart. J Cardiovasc Electrophysiol. 2003 Jul; 14(7):739-49. PMID: 12930255.
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      63. Omens J, McCulloch AD, Criscione JC. Complex distributions of residual stress and strain in the mouse left ventricle: experimental and theoretical models. Biomech Model Mechanobiol. 2003 Apr; 1(4):267-77. PMID: 14586695.
        View in: PubMed
      64. Gopalan SM, Flaim C, Bhatia SN, Hoshijima M, Knoell R, Chien KR, Omens J, McCulloch AD. Anisotropic stretch-induced hypertrophy in neonatal ventricular myocytes micropatterned on deformable elastomers. Biotechnol Bioeng. 2003 Mar 5; 81(5):578-87. PMID: 12514807.
        View in: PubMed
      65. Knöll R, Hoshijima M, Hoffman HM, Person V, Lorenzen-Schmidt I, Bang ML, Hayashi T, Shiga N, Yasukawa H, Schaper W, McKenna W, Yokoyama M, Schork NJ, Omens J, McCulloch AD, Kimura A, Gregorio CC, Poller W, Schaper J, Schultheiss HP, Chien KR. The cardiac mechanical stretch sensor machinery involves a Z disc complex that is defective in a subset of human dilated cardiomyopathy. Cell. 2002 Dec 27; 111(7):943-55. PMID: 12507422.
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      66. Herrmann KL, McCulloch AD, Omens J. Glycated collagen cross-linking alters cardiac mechanics in volume-overload hypertrophy. Am J Physiol Heart Circ Physiol. 2003 Apr; 284(4):H1277-84. PMID: 12595292.
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      67. Omens J, Usyk TP, Li Z, McCulloch AD. Muscle LIM protein deficiency leads to alterations in passive ventricular mechanics. Am J Physiol Heart Circ Physiol. 2002 Feb; 282(2):H680-7. PMID: 11788418.
        View in: PubMed
      68. Omens J, Vaplon SM, Fazeli B, McCulloch AD. Left ventricular geometric remodeling and residual stress in the rat heart. J Biomech Eng. 1998 Dec; 120(6):715-9. PMID: 10412454.
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      69. Omens J. Stress and strain as regulators of myocardial growth. Prog Biophys Mol Biol. 1998; 69(2-3):559-72. PMID: 9785956.
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      70. Omens J, Miller TR, Covell JW. Relationship between passive tissue strain and collagen uncoiling during healing of infarcted myocardium. Cardiovasc Res. 1997 Feb; 33(2):351-8. PMID: 9074699.
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      71. Omens J, Farr DD, McCulloch AD, Waldman LK. Comparison of two techniques for measuring two-dimensional strain in rat left ventricles. Am J Physiol. 1996 Sep; 271(3 Pt 2):H1256-61. PMID: 8853366.
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