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    Ibrahim Ozyurt

    TitleProject Scientist
    SchoolUniversity of California, San Diego
    DepartmentCenter for Research in Biological Systems
    Address9500 Gilman Drive #0608
    CA La Jolla 92093
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Sansone SA, Gonzalez-Beltran A, Rocca-Serra P, Alter G, Grethe JS, Xu H, Fore IM, Lyle J, Gururaj AE, Chen X, Kim HE, Zong N, Li Y, Liu R, Ozyurt I, Ohno-Machado L. DATS, the data tag suite to enable discoverability of datasets. Sci Data. 2017 Jun 06; 4:170059. PMID: 28585923.
        View in: PubMed
      2. Ozyurt I, Grethe JS, Martone ME, Bandrowski AE. Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature. PLoS One. 2016; 11(1):e0146300. PMID: 26730820.
        View in: PubMed
      3. Shin DD, Ozyurt I, Brown GG, Fennema-Notestine C, Liu TT. The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) data repository. Neuroimage. 2016 Jan 01; 124(Pt B):1202-7. PMID: 26032887; PMCID: PMC4651708 [Available on 01/01/17].
      4. Shin DD, Ozyurt I, Liu TT. The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) database and analysis pipeline for arterial spin labeling MRI data. Front Neuroinform. 2013; 7:21. PMID: 24151465; PMCID: PMC3798866.
      5. Ozyurt I. Automatic identification and classification of noun argument structures in biomedical literature. IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec; 9(6):1639-48. PMID: 22868678.
        View in: PubMed
      6. Ozyurt I, Keator DB, Wei D, Fennema-Notestine C, Pease KR, Bockholt J, Grethe JS. Federated web-accessible clinical data management within an extensible neuroimaging database. Neuroinformatics. 2010 Dec; 8(4):231-49. PMID: 20567938; PMCID: PMC2974931.
      7. Brown GG, Mathalon DH, Stern H, Ford J, Mueller B, Greve DN, McCarthy G, Voyvodic J, Glover G, Diaz M, Yetter E, Ozyurt I, Jorgensen KW, Wible CG, Turner JA, Thompson WK, Potkin SG. Multisite reliability of cognitive BOLD data. Neuroimage. 2011 Feb 01; 54(3):2163-75. PMID: 20932915; PMCID: PMC3009557.
      8. Keator DB, Wei D, Gadde S, Bockholt J, Grethe JS, Marcus D, Aucoin N, Ozyurt I. Derived Data Storage and Exchange Workflow for Large-Scale Neuroimaging Analyses on the BIRN Grid. Front Neuroinform. 2009; 3:30. PMID: 19826494; PMCID: PMC2759340.
      9. Ozyurt I, Brown GG. Knowledge discovery via machine learning for neurodegenerative disease researchers. Methods Mol Biol. 2009; 569:173-96. PMID: 19623491.
        View in: PubMed
      10. Bischoff-Grethe A, Ozyurt I, Busa E, Quinn BT, Fennema-Notestine C, Clark CP, Morris S, Bondi MW, Jernigan TL, Dale AM, Brown GG, Fischl B. A technique for the deidentification of structural brain MR images. Hum Brain Mapp. 2007 Sep; 28(9):892-903. PMID: 17295313; PMCID: PMC2408762.
      11. Fennema-Notestine C, Ozyurt I, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, Brown GG. Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location. Hum Brain Mapp. 2006 Feb; 27(2):99-113. PMID: 15986433; PMCID: PMC2408865.