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Revised taxonomy of eastern North Pacific killer whales (Orcinus orca): Bigg's and resident ecotypes deserve species status. R Soc Open Sci. 2024 Mar; 11(3):231368.
Morin PA, McCarthy ML, Fung CW, Durban JW, Parsons KM, Perrin WF, Taylor BL, Jefferson TA, Archer FI. PMID: 38545612; PMCID: PMC10966402.
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Guidelines and quantitative standards for improved cetacean taxonomy using full mitochondrial genomes. J Hered. 2023 11 15; 114(6):612-624.
Morin PA, Martien KK, Lang AR, Hancock-Hanser BL, Pease VL, Robertson KM, Sattler M, Slikas E, Rosel PE, Baker CS, Taylor BL, Archer FI. PMID: 37647537.
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1 Fields:
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Animals
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Diversity of mitochondrial DNA in 3 species of great whales before and after modern whaling. J Hered. 2023 Nov 15; 114(6):587-597.
Sremba AL, Martin AR, Wilson P, Cypriano-Souza AL, Buss DL, Hart T, Engel MH, Bonatto SL, Rosenbaum H, Collins T, Olavarría C, Archer FI, Steel D, Jackson JA, Baker CS. PMID: 37578073.
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1 Fields:
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Animals
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The genomic footprint of whaling and isolation in fin whale populations. Nat Commun. 2023 09 12; 14(1):5465.
Nigenda-Morales SF, Lin M, Nuñez-Valencia PG, Kyriazis CC, Beichman AC, Robinson JA, Ragsdale AP, Urbán R J, Archer FI, Viloria-Gómora L, Pérez-Álvarez MJ, Poulin E, Lohmueller KE, Moreno-Estrada A, Wayne RK. PMID: 37699896; PMCID: PMC10497599.
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1 Fields:
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HumansAnimals
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Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters. Nat Commun. 2023 07 18; 14(1):4020.
Louis M, Korlevic P, Nykänen M, Archer F, Berrow S, Brownlow A, Lorenzen ED, O'Brien J, Post K, Racimo F, Rogan E, Rosel PE, Sinding MS, van der Es H, Wales N, Fontaine MC, Gaggiotti OE, Foote AD. PMID: 37463880; PMCID: PMC10354069.
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Animals
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Possible niche compression and individual specialization in Pacific Arctic beluga (Delphinapterus leucas) from the 19th to 20th century. Ecol Evol. 2023 Jul; 13(7):e10230.
Fraleigh DC, Archer FI, Williard AS, Hückstädt LA, Fleming AH. PMID: 37408623; PMCID: PMC10318618.
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Historical Mitogenomic Diversity and Population Structuring of Southern Hemisphere Fin Whales. Genes (Basel). 2023 05 03; 14(5).
Buss DL, Atmore LM, Zicos MH, Goodall-Copestake WP, Brace S, Archer FI, Baker CS, Barnes I, Carroll EL, Hart T, Kitchener AC, Sabin R, Sremba AL, Weir CR, Jackson JA. PMID: 37239398; PMCID: PMC10218396.
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1 Fields:
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Animals
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Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition. Biol Rev Camb Philos Soc. 2022 08; 97(4):1511-1538.
Hoban S, Archer FI, Bertola LD, Bragg JG, Breed MF, Bruford MW, Coleman MA, Ekblom R, Funk WC, Grueber CE, Hand BK, Jaffé R, Jensen E, Johnson JS, Kershaw F, Liggins L, MacDonald AJ, Mergeay J, Miller JM, Muller-Karger F, O'Brien D, Paz-Vinas I, Potter KM, Razgour O, Vernesi C, Hunter ME. PMID: 35415952; PMCID: PMC9545166.
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17 Fields:
Translation:
Humans
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Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins. Sci Adv. 2021 Oct 29; 7(44):eabg1245.
Louis M, Galimberti M, Archer F, Berrow S, Brownlow A, Fallon R, Nykänen M, O'Brien J, Roberston KM, Rosel PE, Simon-Bouhet B, Wegmann D, Fontaine MC, Foote AD, Gaggiotti OE. PMID: 34705499; PMCID: PMC8550227.
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11 Fields:
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Charting a course for genetic diversity in the UN Decade of Ocean Science. Evol Appl. 2021 Jun; 14(6):1497-1518.
Thomson AI, Archer FI, Coleman MA, Gajardo G, Goodall-Copestake WP, Hoban S, Laikre L, Miller AD, O'Brien D, Pérez-Espona S, Segelbacher G, Serrão EA, Sjøtun K, Stanley MS. PMID: 34178100; PMCID: PMC8210796.
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7
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Reference genome and demographic history of the most endangered marine mammal, the vaquita. Mol Ecol Resour. 2021 May; 21(4):1008-1020.
Morin PA, Archer FI, Avila CD, Balacco JR, Bukhman YV, Chow W, Fedrigo O, Formenti G, Fronczek JA, Fungtammasan A, Gulland FMD, Haase B, Peter Heide-Jorgensen M, Houck ML, Howe K, Misuraca AC, Mountcastle J, Musser W, Paez S, Pelan S, Phillippy A, Rhie A, Robinson J, Rojas-Bracho L, Rowles TK, Ryder OA, Smith CR, Stevenson S, Taylor BL, Teilmann J, Torrance J, Wells RS, Westgate AJ, Jarvis ED. PMID: 33089966; PMCID: PMC8247363.
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21 Fields:
Translation:
AnimalsCells
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Acquisition of obligate mutualist symbionts during the larval stage is not beneficial for a coral host. Mol Ecol. 2019 01; 28(1):141-155.
Hartmann AC, Marhaver KL, Klueter A, Lovci MT, Closek CJ, Diaz E, Chamberland VF, Archer FI, Deheyn DD, Vermeij MJA, Medina M. PMID: 30506836.
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7 Fields:
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AnimalsCells
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Disentangling genetic structure for genetic monitoring of complex populations. Evol Appl. 2018 Aug; 11(7):1149-1161.
Milligan BG, Archer FI, Ferchaud AL, Hand BK, Kierepka EM, Waples RS. PMID: 30026803; PMCID: PMC6050185.
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4
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Differentiation measures for conservation genetics. Evol Appl. 2018 Aug; 11(7):1139-1148.
Jost L, Archer F, Flanagan S, Gaggiotti O, Hoban S, Latch E. PMID: 30026802; PMCID: PMC6050183.
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32
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Comparative growth rates of cultured marine dinoflagellates in the genus Symbiodinium and the effects of temperature and light. PLoS One. 2017; 12(11):e0187707.
Klueter A, Trapani J, Archer FI, McIlroy SE, Coffroth MA. PMID: 29186143; PMCID: PMC5706665.
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8 Fields:
Translation:
Animals
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Meta-mass shift chemical profiling of metabolomes from coral reefs. Proc Natl Acad Sci U S A. 2017 10 31; 114(44):11685-11690.
Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL. PMID: 29078340; PMCID: PMC5676912.
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23 Fields:
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AnimalsCells
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Genetic variation in blue whales in the eastern pacific: implication for taxonomy and use of common wintering grounds. Mol Ecol. 2017 Feb; 26(3):740-751.
Leduc RG, Archer FI, Lang AR, Martien KK, Hancock-Hanser B, Torres-Florez JP, Hucke-Gaete R, Rosenbaum HC, van Waerebeek K, Brownell RL, Taylor BL. PMID: 27891694.
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4 Fields:
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AnimalsCells
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skelesim: an extensible, general framework for population genetic simulation in R. Mol Ecol Resour. 2017 Jan; 17(1):101-109.
Parobek CM, Archer FI, DePrenger-Levin ME, Hoban SM, Liggins L, Strand AE. PMID: 27736016; PMCID: PMC5161633.
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2 Fields:
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apex: phylogenetics with multiple genes. Mol Ecol Resour. 2017 Jan; 17(1):19-26.
Jombart T, Archer F, Schliep K, Kamvar Z, Harris R, Paradis E, Goudet J, Lapp H. PMID: 27417145; PMCID: PMC5215480.
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12 Fields:
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stratag: An r package for manipulating, summarizing and analysing population genetic data. Mol Ecol Resour. 2017 Jan; 17(1):5-11.
Archer FI, Adams PE, Schneiders BB. PMID: 27327208.
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66 Fields:
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Geographic and temporal dynamics of a global radiation and diversification in the killer whale. Mol Ecol. 2015 Aug; 24(15):3964-79.
Morin PA, Parsons KM, Archer FI, Ávila-Arcos MC, Barrett-Lennard LG, Dalla Rosa L, Duchêne S, Durban JW, Ellis GM, Ferguson SH, Ford JK, Ford MJ, Garilao C, Gilbert MT, Kaschner K, Matkin CO, Petersen SD, Robertson KM, Visser IN, Wade PR, Ho SY, Foote AD. PMID: 26087773.
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19 Fields:
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AnimalsCells
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Taxonomic and environmental variation of metabolite profiles in marine dinoflagellates of the genus symbiodinium. Metabolites. 2015 Feb 16; 5(1):74-99.
Klueter A, Crandall JB, Archer FI, Teece MA, Coffroth MA. PMID: 25693143; PMCID: PMC4381291.
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15
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Nuclear and mitochondrial patterns of population structure in North Pacific false killer whales (Pseudorca crassidens). J Hered. 2014 Sep-Oct; 105(5):611-26.
Martien KK, Chivers SJ, Baird RW, Archer FI, Gorgone AM, Hancock-Hanser BL, Mattila D, McSweeney DJ, Oleson EM, Palmer C, Pease VL, Robertson KM, Schorr GS, Schultz MB, Webster DL, Taylor BL. PMID: 24831238.
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6 Fields:
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AnimalsCells
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Mitogenomic phylogenetics of fin whales (Balaenoptera physalus spp.): genetic evidence for revision of subspecies. PLoS One. 2013; 8(5):e63396.
Archer FI, Morin PA, Hancock-Hanser BL, Robertson KM, Leslie MS, Bérubé M, Panigada S, Taylor BL. PMID: 23691042; PMCID: PMC3656932.
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12 Fields:
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AnimalsCells
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Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics. Mol Ecol Resour. 2013 Mar; 13(2):254-68.
Hancock-Hanser BL, Frey A, Leslie MS, Dutton PH, Archer FI, Morin PA. PMID: 23351075.
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16 Fields:
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AnimalsCells
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Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. PLoS One. 2011; 6(11):e27138.
Duchêne S, Archer FI, Vilstrup J, Caballero S, Morin PA. PMID: 22073275; PMCID: PMC3206919.
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42 Fields:
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Animals
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Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA. Mol Ecol Resour. 2011 Mar; 11 Suppl 1:278-98.
Mesnick SL, Taylor BL, Archer FI, Martien KK, Treviño SE, Hancock-Hanser BL, Moreno Medina SC, Pease VL, Robertson KM, Straley JM, Baird RW, Calambokidis J, Schorr GS, Wade P, Burkanov V, Lunsford CR, Rendell L, Morin PA. PMID: 21429181.
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17 Fields:
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AnimalsCells
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Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res. 2010 Jul; 20(7):908-16.
Morin PA, Archer FI, Foote AD, Vilstrup J, Allen EE, Wade P, Durban J, Parsons K, Pitman R, Li L, Bouffard P, Abel Nielsen SC, Rasmussen M, Willerslev E, Gilbert MT, Harkins T. PMID: 20413674; PMCID: PMC2892092.
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105 Fields:
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AnimalsCells
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Applied conservation genetics and the need for quality control and reporting of genetic data used in fisheries and wildlife management. J Hered. 2010 Jan-Feb; 101(1):1-10.
Morin PA, Martien KK, Archer FI, Cipriano F, Steel D, Jackson J, Taylor BL. PMID: 19959596.
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9 Fields:
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Animals
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Can DVD simulations provide an effective alternative for paramedic clinical placement education? Emerg Med J. 2009 May; 26(5):377-81.
Williams B, Brown T, Archer F. PMID: 19386881.
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5 Fields:
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Humans
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Significant deviations from Hardy-Weinberg equilibrium caused by low levels of microsatellite genotyping errors. Mol Ecol Resour. 2009 Mar; 9(2):498-504.
Morin PA, Leduc RG, Archer FI, Martien KK, Huebinger R, Bickham JW, Taylor BL. PMID: 21564679.
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14 Fields: