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    Embriette Hyde

    TitleAssistant Project Scientist
    SchoolUniversity of California, San Diego
    DepartmentPediatrics
    Address9500 Gilman Drive #0763
    CA La Jolla 92093
    vCardDownload vCard

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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Hemmings SMJ, Malan-Muller S, van den Heuvel LL, Demmitt BA, Stanislawski MA, Smith DG, Bohr AD, Stamper CE, Hyde E, Morton JT, Marotz CA, Siebler PH, Braspenning M, Van Criekinge W, Hoisington AJ, Brenner LA, Postolache TT, McQueen MB, Krauter KS, Knight R, Seedat S, Lowry CA. The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study. Psychosom Med. 2017 Jul 11. PMID: 28700459.
        View in: PubMed
      2. Melnik AV, da Silva RR, Hyde E, Aksenov AA, Vargas F, Bouslimani A, Protsyuk I, Jarmusch AK, Tripathi A, Alexandrov T, Knight R, Dorrestein PC. Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples. Anal Chem. 2017 Jul 18; 89(14):7549-7559. PMID: 28628333.
        View in: PubMed
      3. Carlson JM, Leonard AB, Hyde E, Petrosino JF, Primm TP. Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic. Infect Drug Resist. 2017; 10:143-154. PMID: 28533691.
        View in: PubMed
      4. Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R. Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort". mSystems. 2017 Mar-Apr; 2(2). PMID: 28428981.
        View in: PubMed
      5. Knight R, Callewaert C, Marotz C, Hyde E, Debelius JW, McDonald D, Sogin ML. The Microbiome and Human Biology. Annu Rev Genomics Hum Genet. 2017 Aug 31; 18:65-86. PMID: 28375652.
        View in: PubMed
      6. Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech Xu Z, Kightley EP, Thompson LR, Hyde E, Gonzalez A, Knight R. Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns. mSystems. 2017 Mar-Apr; 2(2). PMID: 28289731.
        View in: PubMed
      7. Amir A, McDonald D, Navas-Molina JA, Debelius J, Morton JT, Hyde E, Robbins-Pianka A, Knight R. Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping. mSystems. 2017 Mar-Apr; 2(2). PMID: 28289733.
        View in: PubMed
      8. Weiss S, Xu ZZ, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, Vázquez-Baeza Y, Birmingham A, Hyde E, Knight R. Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome. 2017 Mar 03; 5(1):27. PMID: 28253908.
        View in: PubMed
      9. Morton JT, Sanders J, Quinn RA, McDonald D, Gonzalez A, Vázquez-Baeza Y, Navas-Molina JA, Song SJ, Metcalf JL, Hyde E, Lladser M, Dorrestein PC, Knight R. Balance Trees Reveal Microbial Niche Differentiation. mSystems. 2017 Jan-Feb; 2(1). PMID: 28144630.
        View in: PubMed
      10. Gonzalez A, Hyde E, Sangwan N, Gilbert JA, Viirre E, Knight R. Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort. mSystems. 2016 Sep-Oct; 1(5). PMID: 27822557.
        View in: PubMed
      11. Vázquez-Baeza Y, Hyde E, Suchodolski JS, Knight R. Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks. Nat Microbiol. 2016 Oct 03; 1:16177. PMID: 27694806.
        View in: PubMed
      12. Hyde E, Navas-Molina JA, Song SJ, Kueneman JG, Ackermann G, Cardona C, Humphrey G, Boyer D, Weaver T, Mendelson JR, McKenzie VJ, Gilbert JA, Knight R. The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat. mSystems. 2016 Jul-Aug; 1(4). PMID: 27822543.
        View in: PubMed
      13. Quinn RA, Navas-Molina JA, Hyde E, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R. From Sample to Multi-Omics Conclusions in under 48 Hours. mSystems. 2016 Mar-Apr; 1(2). PMID: 27822524.
        View in: PubMed
      14. Walters W, Hyde E, Berg-Lyons D, Ackermann G, Humphrey G, Parada A, Gilbert JA, Jansson JK, Caporaso JG, Fuhrman JA, Apprill A, Knight R. Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys. mSystems. 2016 Jan-Feb; 1(1). PMID: 27822518.
        View in: PubMed
      15. Gunawardana M, Hyde E, Lahmeyer S, Dorsey BL, La Val TP, Mullen M, Yoo J, Knight R, Baum MM. Euphorbia plant latex is inhabited by diverse microbial communities. Am J Bot. 2015 Dec; 102(12):1966-77. PMID: 26656131.
        View in: PubMed
      16. Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde E, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, Bibat A, Nicholas C, Gebert MJ, Petrosino JF, Reed SC, Gilbert JA, Lynne AM, Bucheli SR, Carter DO, Knight R. Microbial community assembly and metabolic function during mammalian corpse decomposition. Science. 2016 Jan 08; 351(6269):158-62. PMID: 26657285.
        View in: PubMed
      17. Carlson JM, Hyde E, Petrosino JF, Manage AB, Primm TP. The host effects of Gambusia affinis with an antibiotic-disrupted microbiome. Comp Biochem Physiol C Toxicol Pharmacol. 2015 Dec; 178:163-8. PMID: 26475244.
        View in: PubMed
      18. McDonald D, Xu Z, Hyde E, Knight R. Ribosomal RNA, the lens into life. RNA. 2015 Apr; 21(4):692-4. PMID: 25780194; PMCID: PMC4371336.
      19. Weiss S, Amir A, Hyde E, Metcalf JL, Song SJ, Knight R. Tracking down the sources of experimental contamination in microbiome studies. Genome Biol. 2014 Dec 17; 15(12):564. PMID: 25608874; PMCID: PMC4311479.
      20. Hyde E, Haarmann DP, Petrosino JF, Lynne AM, Bucheli SR. Initial insights into bacterial succession during human decomposition. Int J Legal Med. 2015 May; 129(3):661-71. PMID: 25431049.
        View in: PubMed
      21. Hyde E, Luk B, Cron S, Kusic L, McCue T, Bauch T, Kaplan H, Tribble G, Petrosino JF, Bryan NS. Characterization of the rat oral microbiome and the effects of dietary nitrate. Free Radic Biol Med. 2014 Dec; 77:249-57. PMID: 25305639.
        View in: PubMed
      22. Hyde E, Andrade F, Vaksman Z, Parthasarathy K, Jiang H, Parthasarathy DK, Torregrossa AC, Tribble G, Kaplan HB, Petrosino JF, Bryan NS. Metagenomic analysis of nitrate-reducing bacteria in the oral cavity: implications for nitric oxide homeostasis. PLoS One. 2014; 9(3):e88645. PMID: 24670812; PMCID: PMC3966736.
      23. Hyde E, Petrosino JF, Piedra PA, Camargo CA, Espinola JA, Mansbach JM. Nasopharyngeal Proteobacteria are associated with viral etiology and acute wheezing in children with severe bronchiolitis. J Allergy Clin Immunol. 2014 Apr; 133(4):1220-2. PMID: 24365140; PMCID: PMC3972371.
      24. Hsiao EY, McBride SW, Hsien S, Sharon G, Hyde E, McCue T, Codelli JA, Chow J, Reisman SE, Petrosino JF, Patterson PH, Mazmanian SK. Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders. Cell. 2013 Dec 19; 155(7):1451-63. PMID: 24315484; PMCID: PMC3897394.
      25. Hyde E, Haarmann DP, Lynne AM, Bucheli SR, Petrosino JF. The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition. PLoS One. 2013; 8(10):e77733. PMID: 24204941; PMCID: PMC3813760.
      26. Noval Rivas M, Burton OT, Wise P, Zhang YQ, Hobson SA, Garcia Lloret M, Chehoud C, Kuczynski J, DeSantis T, Warrington J, Hyde E, Petrosino JF, Gerber GK, Bry L, Oettgen HC, Mazmanian SK, Chatila TA. A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis. J Allergy Clin Immunol. 2013 Jan; 131(1):201-12. PMID: 23201093; PMCID: PMC3860814.
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