Charles Elkan

Title(s)	Adjunct Professor, Computer Science and Engineering
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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Optimal Thresholding of Classifiers to Maximize F1 Measure. Mach Learn Knowl Discov Databases. 2014; 8725:225-239. Lipton ZC, Elkan C, Naryanaswamy B. PMID: 26023687; PMCID: PMC4442797.

View in: PubMed Mentions: 64
Differential privacy based on importance weighting. Mach Learn. 2013 Oct; 93(1):163-183. Ji Z, Elkan C. PMID: 24482559; PMCID: PMC3904646.

View in: PubMed Mentions: 5
Inhibition in multiclass classification. Neural Comput. 2012 Sep; 24(9):2473-507. Huerta R, Vembu S, Amigó JM, Nowotny T, Elkan C. PMID: 22594829; PMCID: PMC3717401.

View in: PubMed Mentions: 8 Fields:
Med Medical Informatics
Translation:Humans Animals Cells
Predicting accurate probabilities with a ranking loss. Proc Int Conf Mach Learn. 2012; 2012:703-710. Menon AK, Jiang XJ, Vembu S, Elkan C, Ohno-Machado L. PMID: 25285328; PMCID: PMC4180410.

View in: PubMed Mentions: 9
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics. 2011 Oct 03; 12 Suppl 8:S3. Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. PMID: 22151929; PMCID: PMC3269938.

View in: PubMed Mentions: 77 Fields:
Com Computational Biology
Translation:Humans Animals
Identifying relevant data for a biological database: handcrafted rules versus machine learning. IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun; 8(3):851-7. Sehgal AK, Das S, Noto K, Saier MH, Elkan C. PMID: 21393656; PMCID: PMC3980937.

View in: PubMed Mentions: 2 Fields:
Com Computational Biology
Translation:Humans
Learning gene regulatory networks from only positive and unlabeled data. BMC Bioinformatics. 2010 May 05; 11:228. Cerulo L, Elkan C, Ceccarelli M. PMID: 20444264; PMCID: PMC2887423.

View in: PubMed Mentions: 27 Fields:
Com Computational Biology
The Transporter Classification Database: recent advances. Nucleic Acids Res. 2009 Jan; 37(Database issue):D274-8. Saier MH, Yen MR, Noto K, Tamang DG, Elkan C. PMID: 19022853; PMCID: PMC2686586.

View in: PubMed Mentions: 221 Fields:
Bio Biochemistry
A common ancestor for a subunit in the mitochondrial proton-translocating NADH:ubiquinone oxidoreductase (complex I) and short-chain dehydrogenases/reductases. Cell Mol Life Sci. 1999 Mar; 55(3):450-5. Baker ME, Grundy WN, Elkan CP. PMID: 10228558.

View in: PubMed Mentions: 2 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Humans Animals Cells
Spinach CSP41, an mRNA-binding protein and ribonuclease, is homologous to nucleotide-sugar epimerases and hydroxysteroid dehydrogenases. Biochem Biophys Res Commun. 1998 Jul 20; 248(2):250-4. Baker ME, Grundy WN, Elkan CP. PMID: 9675122.

View in: PubMed Mentions: 10 Fields:
Bio Biochemistry Bio Biophysics
Translation:Animals Cells
Meta-MEME: motif-based hidden Markov models of protein families. Comput Appl Biosci. 1997 Aug; 13(4):397-406. Grundy WN, Bailey TL, Elkan CP, Baker ME. PMID: 9283754.

View in: PubMed Mentions: 58 Fields:
Bio Biology Bio Biomedical Engineering
Translation:Cells
An artificial intelligence approach to motif discovery in protein sequences: application to steriod dehydrogenases. J Steroid Biochem Mol Biol. 1997 May; 62(1):29-44. Bailey TL, Baker ME, Elkan CP. PMID: 9366496.

View in: PubMed Mentions: 21 Fields:
Bio Biochemistry Mol Molecular Biology
Translation:Humans Animals Cells
Hidden Markov model analysis of motifs in steroid dehydrogenases and their homologs. Biochem Biophys Res Commun. 1997 Feb 24; 231(3):760-6. Grundy WN, Bailey TL, Elkan CP, Baker ME. PMID: 9070888.

View in: PubMed Mentions: 5 Fields:
Bio Biochemistry Bio Biophysics
Translation:Humans Animals Cells
ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool. Comput Appl Biosci. 1996 Aug; 12(4):303-10. Grundy WN, Bailey TL, Elkan CP. PMID: 8902357.

View in: PubMed Mentions: 23 Fields:
Bio Biology Bio Biomedical Engineering
Translation:Cells