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    Bo Li

    TitleProfessor
    SchoolUniversity of California, San Diego
    DepartmentMathematics
    Address9500 Gilman Drive #0112
    CA La Jolla 92093
    Phone858-534-6932
    vCardDownload vCard

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      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Ricci CG, Li B, Cheng LT, Dzubiella J, McCammon JA. "Martinizing" the Variational Implicit Solvent Method (VISM): Solvation Free Energy for Coarse-Grained Proteins. J Phys Chem B. 2017 Jul 13; 121(27):6538-6548. PMID: 28613904.
        View in: PubMed
      2. Camley BA, Zhao Y, Li B, Levine H, Rappel WJ. Crawling and turning in a minimal reaction-diffusion cell motility model: Coupling cell shape and biochemistry. Phys Rev E. 2017 Jan; 95(1-1):012401. PMID: 28208438.
        View in: PubMed
      3. Huber GA, Miao Y, Zhou S, Li B, McCammon JA. Hybrid finite element and Brownian dynamics method for charged particles. J Chem Phys. 2016 Apr 28; 144(16):164107. PMID: 27131531.
        View in: PubMed
      4. Sun H, Wen J, Zhao Y, Li B, McCammon JA. A self-consistent phase-field approach to implicit solvation of charged molecules with Poisson-Boltzmann electrostatics. J Chem Phys. 2015 Dec 28; 143(24):243110. PMID: 26723595.
        View in: PubMed
      5. Sun H, Zhou S, Moore DK, Cheng LT, Li B. Numerical Treatment of Stokes Solvent Flow and Solute-Solvent Interfacial Dynamics for Nonpolar Molecules. J Sci Comput. 2016 May; 67(2):705-723. PMID: 27365866.
        View in: PubMed
      6. Zhou S, Cheng LT, Sun H, Che J, Dzubiella J, Li B, McCammon JA. LS-VISM: A software package for analysis of biomolecular solvation. J Comput Chem. 2015 May 30; 36(14):1047-59. PMID: 25766844.
        View in: PubMed
      7. Wang N, Zhou S, Kekenes-Huskey PM, Li B, McCammon JA. Poisson-Boltzmann versus Size-Modified Poisson-Boltzmann Electrostatics Applied to Lipid Bilayers. J Phys Chem B. 2014 Dec 26; 118(51):14827-32. PMID: 25426875.
        View in: PubMed
      8. Camley BA, Zhang Y, Zhao Y, Li B, Ben-Jacob E, Levine H, Rappel WJ. Polarity mechanisms such as contact inhibition of locomotion regulate persistent rotational motion of mammalian cells on micropatterns. Proc Natl Acad Sci U S A. 2014 Oct 14; 111(41):14770-5. PMID: 25258412; PMCID: PMC4205601 [Available on 04/14/15].
      9. Zhou S, Cheng LT, Dzubiella J, Li B, McCammon JA. Variational Implicit Solvation with Poisson-Boltzmann Theory. J Chem Theory Comput. 2014 Apr 8; 10(4):1454-1467. PMID: 24803864.
        View in: PubMed
      10. Camley BA, Zhao Y, Li B, Levine H, Rappel WJ. Periodic migration in a physical model of cells on micropatterns. Phys Rev Lett. 2013 Oct 11; 111(15):158102. PMID: 24160631; NIHMSID: NIHMS528940.
        View in: PubMed
      11. Zhou S, Rogers KE, de Oliveira CA, Baron R, Cheng LT, Dzubiella J, Li B, McCammon JA. Variational Implicit-Solvent Modeling of Host-Guest Binding: A Case Study on Cucurbit[7]uril| J Chem Theory Comput. 2013 Sep 10; 9(9):4195-4204. PMID: 24039554.
        View in: PubMed
      12. Zhao Y, Kwan YY, Che J, Li B, McCammon JA. Phase-field approach to implicit solvation of biomolecules with Coulomb-field approximation. J Chem Phys. 2013 Jul 14; 139(2):024111. PMID: 23862933; PMCID: PMC3724799.
      13. Li B, Zhao Y. Variational Implicit Solvation with Solute Molecular Mechanics: From Diffuse-Interface to Sharp-Interface Models. SIAM J Appl Math. 2013; 73(1):1-23. PMID: 24058213.
        View in: PubMed
      14. Makino H, Li B. Monitoring synaptic plasticity by imaging AMPA receptor content and dynamics on dendritic spines. Methods Mol Biol. 2013; 1018:269-75. PMID: 23681636.
        View in: PubMed
      15. Cheng LT, Li B, White M, Zhou S. Motion of a Cylindrical Dielectric Boundary. SIAM J Appl Math. 2013; 73(1):594-616. PMID: 23885130.
        View in: PubMed
      16. Wen J, Zhou S, Xu Z, Li B. Competitive adsorption and ordered packing of counterions near highly charged surfaces: From mean-field theory to Monte Carlo simulations. Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Apr; 85(4 Pt 1):041406. PMID: 22680474; NIHMSID: NIHMS490544.
        View in: PubMed
      17. Cheng HB, Cheng LT, Li B. Yukawa-Field Approximation of Electrostatic Free Energy and Dielectric Boundary Force. Nonlinearity. 2011 Nov; 24(11):3215. PMID: 23853423.
        View in: PubMed
      18. Zhou S, Wang Z, Li B. Mean-field description of ionic size effects with nonuniform ionic sizes: a numerical approach. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Aug; 84(2 Pt 1):021901. PMID: 21929014; NIHMSID: NIHMS484671.
        View in: PubMed
      19. Li B, Shopple J. An Interface-Fitted Finite Element Level Set Method with Application to Solidification and Solvation. Commun Comput Phys. 2011 Jul; 10(1):32-56. PMID: 24058382.
        View in: PubMed
      20. Li B, Piriz J, Mirrione M, Chung C, Proulx CD, Schulz D, Henn F, Malinow R. Synaptic potentiation onto habenula neurons in the learned helplessness model of depression. Nature. 2011 Feb 24; 470(7335):535-9. PMID: 21350486.
        View in: PubMed
      21. Li B, Cheng X, Zhang Z. Dielectric Boundary Force in Molecular Solvation with the Poisson-Boltzmann Free Energy: A Shape Derivative Approach. SIAM J Appl Math. 2011; 71(6):2093-2111. PMID: 24058212.
        View in: PubMed
      22. Cheng LT, Li B, Wang Z. Level-Set Minimization of Potential Controlled Hadwiger Valuations for Molecular Solvation. J Comput Phys. 2010 Nov 1; 229(22):8497-8510. PMID: 22323839.
        View in: PubMed
      23. Li B, Lu B, Wang Z, McCammon JA. Solutions to a reduced Poisson-Nernst-Planck system and determination of reaction rates. Physica A. 2010 Apr 1; 389(7):1329-1345. PMID: 20228879.
        View in: PubMed
      24. Cheng LT, Wang Z, Setny P, Dzubiella J, Li B, McCammon JA. Interfaces and hydrophobic interactions in receptor-ligand systems: A level-set variational implicit solvent approach. J Chem Phys. 2009 Oct 14; 131(14):144102. PMID: 19831428; PMCID: PMC2771049.
      25. Cheng LT, Xie Y, Dzubiella J, McCammon JA, Che J, Li B. Coupling the Level-Set Method with Molecular Mechanics for Variational Implicit Solvation of Nonpolar Molecules. J Chem Theory Comput. 2009 Feb 10; 5(2):257-266. PMID: 20150952.
        View in: PubMed
      26. Cheng LT, Dzubiella J, McCammon JA, Li B. Application of the level-set method to the implicit solvation of nonpolar molecules. J Chem Phys. 2007 Aug 28; 127(8):084503. PMID: 17764265.
        View in: PubMed